Chy6G109940 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G109940
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4
Location	chrH06: 3114042 .. 3122237 (-)
RNA-Seq Expression	Chy6G109940
Synteny	Chy6G109940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCACTTCAAAACGACACTGTTATCGAACCCACACCATCCTCCTCTTCCACAACTCTCAGCCGCTACGAGAACCAAAAGCGCCGCGACTGGACCTCCTTCGGCCATTACATAACCAACCACACCCCACCCTTAGCCTTGGCTCGCTGCACCGGCGCCCACGTCGTCGAGTTCCTCCGCTACCTCGACCAATTTGGCAAGACCAAGATCCATTCCAATCTCTGCCCTTTCTTCGGCCACCCAAGCCCTTCTGGTCCATGCATCTGCCCGTTGCGCCAAGCCTGGGGCAGCCTTGACGCACTCGTGGGCCGCCTTCGGGCTGCTTACGAGGAGCACGGTGGGAATGCTGAGACCAACCCTTTTGGGGCTCGGTCTGTGCGTGTTTATTTGCGTGAGGTTCGAGATTTGCAGGCTAAGGCTAGAGGGGTTAGTTACACAAAGAAGAAGCGAAAGCGGCCGTTGGGACCGCCGCCGTCGCGCTCGGGTGCTAGCAGTTGTAGTGAAAGTACAATGAGTCAGTTGAAGTTATAAACTATATAACTAAATTAAAAACTTTTTCATTTACTATATGGTAAGAATGATATATATATATATATAATTACCTAAATGGTAATTATTATTTTTCATTCTCTCTCCACAAGAATGTCGTTTAGTGTATTTGAAATTATTAAATATAATTTAAGGGAGAAAATGTATTTTTAGTTAAGAAGTTTGAGAAGTACTAATTAATTTGATCTAAAAATGATATTGACATCGGACATAGTTTTTTTTTTTTAATATAATGTATTTCATATTACTCTCATAACATATTATTAAATTATTTATTTATTTATTTATTATTTACTTGTTTCATTGATCCCACGTAATTCTTAAGTAATATTTTGTAGAACTACTCTAAATTTTCTTGAGAGGGAAGGAATAAAAGTTAAAATTGGTCAAACCCACCAATGTATTTATGTTATTGAGTTTAAATTTTAAAGGAAATTTATCAGGTTTTATGAAAAGATAAAAGTAATCCTGAAAATTAGCAATCAATTAAAATGAAGAAGAATTTATGGGGCTCGTTGATTATGGAGTTTCTCAAATAATTTACATATAATATTTAAAGGGTTTTTTTTTTCTTTTTTCAGAAGATATATGTATAATTAGTTTGTATTTTAAATACTGTAAGAGAAGATTTTATGAAAAGTGGCTTATTTCATATTTCTAAAGTATTTGGGAACAAAATTGAAAAGGTTGGGAGAGGTTTGGGAACTTGAGTCAATTTTGTCGAATTTTGGTTGCACAAATATCAAGTGGTATCAACCACACACACAATCATGTCTTTGAATTATGTTGTACACAAGTGGAAATTTTCTGGTGTGTCTTACTAATTTGAGTTATGAATCTTGTGAAAAGGCCATTGAATTGAAACTTGAACATCATCAAATTTAGTGTTGCAGCTGCAAATTTCTTGGGAAAAAACTTGCAAGTGATATAATCGAACTCTATTCATGTTTTCGAGAACTCTATTCATGTTACATATTCAACAAACCCTTCTTCAACTTGTTTACCTAAGATTTTAGTTTTCACTAGTTTTATGGACATAGAAGATATATAAACTTTAAAATAAATTTGTTGGTTGAAATATCGAAACCTTGGTTATATATTAAAATTTCTTTAAATTAATAAATTAAATAAAATATTCTACCTCGTTATGAATTATGCTGCTTATATTAAAAATTGATTAGGTTTATGTTCAACTTATTAATAATCCGTAAAAATTTTGACATGTGGGTGAAAATTTAATTGATATCAATAAAGTGAGATCTATGTTTGTTTACTAAAATTGTAATACAATTAAATTAGTTACGTCACGTTATTTTGCCATGAAGAATTCAAATGGAATATTGCAAAAAAAAGAACATGTATTGTATATGTGACGATATCAAAATAATGTTTATAAAAAAATAATTCTAAAAAGATAAATGTAATCTATAGTTGTTTAACCATTAAATGACTAAGGGATATATGTGTTGAGTGTGCAGATATGTATTGGATATGTGTGTCAAATATCAAAATAATCATGTCTCTTACTTCATTATATTCTTGTATAATATCTTAAAGATGCATTTGAATAGCTTTTTAATCTATCAAATAAGTAAAAACTTATTTCTACTTTAAACAACAAAATATAGAAGACGTTTGATTAGGTTTATGATTCATCAAGTTTATTTTTTACGAGTATAATTTTTTCTTAAGGACATGATTTTACTAAAAATTGTTATACACATTTTTTTTTTGCAACAAACAAGAATAATGATGTTATAGAGATACATACAATGTAAATATCTTTTAATTCTAACATGAACATTCAATATAATGAAATAAAGATACGAGTGAAAAATCTACCCAAGCCCATGAAAAAATGGCAACCATTTTTCTTATTTCATTTTCTCAAGATACCTTAAACAAAGAGAAAAATATGCTGATCAAGAACCTTGAACAAAGTATATTATTGGAACTTGAGCTTTTGTTGCATTTGAACATTTTGTCATATATATATATATATTTGATTGTGATTATATCATAACTGCAATTGTGATTATCATTATTCCTCTTCCAATGTTTGGACTTGTGATTGTATTTTAATTTGTCGCTTAATTACATAATATTGTGAAAGTTGATAGACAAACAATGAGTTTGGTCACCCTTAGATTTTGACCTAAAGTAAAGAAATTTGTGGCATATTTTCAACATTTAGTATGCTTAAAAATCACATATAGTGGACCCATGACGTCATGTATCAATTATATATATATACAAACACACAATAATTTAGAAGACATTTTGGTACGACTTTATTTCATATATTTTGGATTTTTTTGGACCTTAGGTTCAATTTAATCTTAGTTTTTAGTCTTTTTACCCTACTTCCATCCATAAATCTATCTCTGTCTTTTTTAATTTTCTACCAATCTTTTTTAAAAAAACAAATAAAAAATTTGAAAACTATAGAAGAAAAAAGAGTTTTTGAATTCTTGCACTTCTCCCAAAAATATAAAGACCTAAAAGTTTATGAGAAAACAAATATAAAATGATTATTTATAAGAGTTTGTATTCAAAATGCTAAAATTAATATAAATACAGAGTTTATTTTGATGATTTTTTCGTCAAATAATACATGGCATGATGTTTTTAATAAATATCATTGTCGTGTGGTTTACTAATATTTATAAAGATATATTTATACTATAAACAAATGAAGACAGTTAGCCTGAAAAGCTTTAGGAGGAAATCACAGCAAAATATGTTCACCTTTTCAATAAACAAATTTACTTTTCTTTTCTTTTTTTTTTTAATGGTAATTGATGACCATTTTAAAAAAAATAATAATATATAGTAATATTTTTAAAAAAATTGTAAATATAACAAAATCTATTGTTGATAGACTCGTATGGCCTATCACTCATGCACCATGCCATTATTTGCAACATAGTTTATCGGATAGAATTATTTTAAAGGGTCTTTAACTCATATAGCCTAATTTACCATAAGATATTACAAAAAAAAAAAAAAAAACACAAATTGCTAATATTTTACACAAATGTACCAAATGGGCAACAATATTACACAAAAATAAGCCCAAATTACCAACATGCCCATATGGTATTTTTTTATTGTTTTAAAATATACAGAAATATTAATTATAATGAGAAAATCGTTGATCATTAAAATAGGAAAGTGATGGAACAATTTTCTCACTTTCCATATTCGACGGCAGACCAGTTCCTCTGTTTTCCAACGGCAGAAAAATACGAGGTTAGGTTGTATGTATTCAATACATAGTAGACATTTGGTATATTACATATATTCAAGAGATTAGACTGAATAGGCAACGAAACAAAAAATGAAATTTTGCATGTGTTATATCCTAGGGTTTATTGAGGTTTCGGAGTGAAGAAGACATTTTTAGTGGAACATCGACTGAACATGTATGTTCATAATCGAACCTAGTAAGAACCCATAATGTCCTATCACCATGATAGCAACAAGAAGCACGCAATGACCATTGACAATCTTCAATAACGCACTGCAGTATCAAGACCTGCTTGTTTGATTTGACTGTAACGTATTGAAAGTTATCTCTAAGGGCAATGGCTTGAATAGACTTTTTCAATAAAGATTTGGTTGAAAACATGTCTTGGTTTTTTAGTGAAAAGTTGGAAGCTATCTTAGACATATCTATGGCTTCAAAAAAATGACCTCATCTGAATGGATTTCAGTTTGAAATGAACTTATATGGTAAACGCATTTAACATCGTTGTCATTCTTTATTCCCATATCTTTCTTAAGACATTCTATAGGACCTAAGCAAAGGTATATCTCAAAATTGTTCATATCAATAAAACTACCTAACTTGGATCTAAGGACATTGGACAATTTAGTATATGACATATGTTCGTAAACTACTATTTCAGACACACTATAACTAACGTAATTGTTAGTTTCGTTGAAAAAACCATCGAAATATACTGCAATACTGGCCATCCTGACACACAAATATTACAACTATAGGTTATTATAAAGTATAATTGTAAGTAATATATGGTATATATTTTATAAAACATCAACTAAAAGTATTATATCTCACGGGTAATATATAAAACTAATATAAATGTAAATAAGATGTGGTATATATATAATAAATCACATATACAAAGTATTATATATTACAATAATATTATAAAATTAGTATAATTGTAAATAATATATGGTATATATATTATAAAACATCAACTAAAAAGTATTATATCTTACGGGTAATTTATAAAACTAATATAAATGTAAACAAGATGTGGTATATATATAATAAATCACATATACAAACTATTATATATTGCGATAATATTATAAAACTAGCATAATTATAAATAATATGTGGTATATATTTACTAAATCACATCAGACAACCATTAAAATGAGGGGTATATCGTTAAAGTATCGATATATACGCAGATGATATACTCTCAATTATCTAATCATGTAGTTTTTGTGTTTAACTATTTAATTTTAAACGGGTAAAAGAACAGATGACCTACTGTGGAAATTATCTTAGCTTCAGGTGATGGAAAATTGTAAATGACGACTACTTGTAAAGAAGATGCAGCTTACGGTTATTACAAAATTGAATACAAATTTGACTGTCGAAAAATTGTGAAAACAGGGTAATAAGATTGAATTTTTAAAAGCTTCAAGTGATGGACAATAATGGCTGCCGGCGATGGAGTATAATAGGTAAAAAGATAGTCTTGGAAAGAAGATATCATACTGTTATTACAAATTAGAATAAAATTACCCATATTATAATATATTTTGATTTATAGTTAATTGAAAAGATACTTAAAATTTATTACTATATTCATTAATCACATTAAATTAAGGAAGTTATGGAATTTATATTAAATTCAAATTATTTTCAATAAGGAAATATTTTAAATAATATTATAAATAAAATATCTAATTAATAATTATTGAAAGGTTAGAATGGTATATAAAATATTATCTTTCCTATTTAAGAAAATAATTTTTAAATTAGGACATTTGTGAAATTTTTTATTCAATTAATGCCATTTTGTCTAAATCTTTCTATTTTAAATCTAATTCTAAATTTATTGAGTATTTTTTTTTCCTTGGATCGTTGTTGAGCCCAGAACGAGACGGAATGTTGTCACATCTCGACCAATGTTTCGGCATTGGGCCCATCTTTAGGCCCAGTTAACCAATGGATCGAGTAACTCCGTTAAAAAAAAAAAAAAGAAGAAAAAAACGGAAAGAAAAATGATTAGTTGAAAAAGCAATAGATAATTCTTTTAATTTATTTATTATTAGCGTCTCCAAACTTTTTTTCTCCTCTAGTTTTTGTAAAGTAAAATGGTATTCATTTTACCTATGGGTTTCTTACTTTATTTCCTCTTCAATTCCCTACAGCTAAATAAGTAACAAATTTTCCATTTAATTCTAAACTATTACGGGTTAATGAAGTCTAAGAAAATTTGTAACGAAGTTTTTGCCATTAGAAAAGTTTTACTACTCCCTTACGTCATTACATATATTACTCTCTTTTTTAATGCATTTGAAAAGATTTGATTTCAAACATATTTTTGAAAGGTGAAAAAGATAATATTATCTATTTATTTATTATATACCTTAATATTTAATACAAGTTAAATAAGAAAACGTAGAATTTTGCGGTGTCATATGTGACCTTTGCTCGTTCCGTAGTGAATTTAAGAATTGGATCGCGCCATTTTTCTGCTCCCATCGGTTCTTCCCCAATTCGAACATGCAGGTGCGCTTTTTGTTCATAAATCTCTTGTTTTATGTGTTATCTACTCATGTATTCCCATTTTTTGTTAATTCATTTCAGCAGTAATTCCTAAACCCTAGAACTCGATGCAATTTCTTTTCTGAACGTGCATGCTGATTTATATATTTGTTCCTACTTATATTCGACTCTTCCACTTAGTTGATCGGAGGTTTTTCTTTGCTCTCAATTTTACTAATGAATTCTAGGAATTTGAGTAATTCCATTTATCGTTTATTCATACGTTTGATTAGCGTTTAAGGTTGTTTATTTTTAGTTGCCATATGAAGAATACGAGTTCTTTTACTATGATGCAATCATGAAAATCAGCTCTGCTTGAAGTGAACAACCAAGAACGGGAATTACATACATTCCTTCAAAAGCATTTGATTCCTAGGAAAGGATACCGTTTTGAGCCCTTAGTTTATTGATTAAGTTGTTTTCCTAATTTTGTTCGGATGGTTTTTAGTGTCATATGCAGTGATAACCAGTGTTTTTTATTTTTTTGAAGCTCAAGGTGCAATAGTCTTTTGAGACTTAAGCTCACAGGAGCAAAAATGGATGAATTTCCATATATAAAGCATAATTGAAGTGAGAATATGAAGATAAAAAAATTAAACACAAAGAATTTTGCATTTAGACTAATTTTGATCTTTAAGTTAATAAAGAAGGAAAACCCTAATTAGTGTTATTATTTAACAAAATAATGAAAAAGACCCAGGACTTCGGGTCTTGGGGCCTAACGTAAGCTGTGTGCCTTATTTTGTGCACCTCCCCATTTCAAGACAAGGTGCCAGTCTGCCAGACTTGTGCCTAGGGCGTAGGCGTGTACCTGGGTGGGTTTTTTAAAACACTGGTGATAACCTCTGAATTAGCAATCCATTGTTTAAATCTAAGTCCGATCATGGCTTCCTGTCTTTGCTTGAGGTTGCCTAAGTGGGCGCTAATATTGGTTAATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTGCAGGCTAAATATGTGGGAACTGGGCATGCCGACTTAAATAGATTGTTAGTTTCCTTATTCCTTTGGAGCTTTCATCTTCTATTGCTTTGCATGGTAGTTTGTAAACCTCAGTTCACATCTCTGTGTGTACAGTGAATGGGCTGTGAACATTCAGCGCGATAGCTATGCATCATATGTTGGACACTACCCAATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGGTTGATACATTGTCATTACTTTTTTTGTTTTTATTTGTCTTTTTTCCTTGCAAGTTAAAAAAAAGTTGAGACTTGAAAAAGAACAAAAGGAAGAACGATTAAAGATGGGTATTCTCTTCATACTTTTTTCGGGCCAACGATTGTTGAGGTTTCTGCATACATTCATTATACCTGTTCATTATTTACTTTCACCTGCCCTCCACCCATATAAAGTGTGCTTCCTATTTTCATGTCCTAGTAACTTTGATTGTTAGGTGAGTTGTTCCTTTCAATTTTTCGGTTTTTAGTTTCAGTATGGCTTTTCTATCTTAACTCGATAAGTAGCTCAAGTAATTTCATTCTGCATAACATGCAGTGTCTAGAATAAAATGGTCCTACCACTTTTTAAATGTGGGGCTGTGCCCATCATGTAACTAGATTTCGTTCTTAACAAGCGATGGAAAATTTGCTCATAGTTTCTCCTGGATCTCATTTACAACTTAATTAGATAAAGAAAGGTAGCTCTTAACATCCTTTTTCGTTTTTTGTTCCTTTTACAGAAAATGCTGTTACCTTGCGGCCTTCCTCCAGAAAGGGAAGATGATTGA

mRNA sequence

ATGGATTCACTTCAAAACGACACTGTTATCGAACCCACACCATCCTCCTCTTCCACAACTCTCAGCCGCTACGAGAACCAAAAGCGCCGCGACTGGACCTCCTTCGGCCATTACATAACCAACCACACCCCACCCTTAGCCTTGGCTCGCTGCACCGGCGCCCACGTCGTCGAGTTCCTCCGCTACCTCGACCAATTTGGCAAGACCAAGATCCATTCCAATCTCTGCCCTTTCTTCGGCCACCCAAGCCCTTCTGGTCCATGCATCTGCCCGTTGCGCCAAGCCTGGGGCAGCCTTGACGCACTCGTGGGCCGCCTTCGGGCTGCTTACGAGGAGCACGGTGGGAATGCTGAGACCAACCCTTTTGGGGCTCGGTCTGTGCGTGTTTATTTGCGTGAGGTTCGAGATTTGCAGGCTAAGGCTAGAGGGGTTAGTTACACAAAGAAGAAGCGAAAGCGGCCGTTGGGACCGCCGCCGTCGCGCTCGGGTGCTAGCAGTTGTAGTGAAACTGCAAATTTCTTGGGAAAAAACTTGCAAGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTGCAGGCTAAATATGTGGGAACTGGGCATGCCGACTTAAATAGATTTGAATGGGCTGTGAACATTCAGCGCGATAGCTATGCATCATATGTTGGACACTACCCAATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGAAAATGCTGTTACCTTGCGGCCTTCCTCCAGAAAGGGAAGATGATTGA

Coding sequence (CDS)

ATGGATTCACTTCAAAACGACACTGTTATCGAACCCACACCATCCTCCTCTTCCACAACTCTCAGCCGCTACGAGAACCAAAAGCGCCGCGACTGGACCTCCTTCGGCCATTACATAACCAACCACACCCCACCCTTAGCCTTGGCTCGCTGCACCGGCGCCCACGTCGTCGAGTTCCTCCGCTACCTCGACCAATTTGGCAAGACCAAGATCCATTCCAATCTCTGCCCTTTCTTCGGCCACCCAAGCCCTTCTGGTCCATGCATCTGCCCGTTGCGCCAAGCCTGGGGCAGCCTTGACGCACTCGTGGGCCGCCTTCGGGCTGCTTACGAGGAGCACGGTGGGAATGCTGAGACCAACCCTTTTGGGGCTCGGTCTGTGCGTGTTTATTTGCGTGAGGTTCGAGATTTGCAGGCTAAGGCTAGAGGGGTTAGTTACACAAAGAAGAAGCGAAAGCGGCCGTTGGGACCGCCGCCGTCGCGCTCGGGTGCTAGCAGTTGTAGTGAAACTGCAAATTTCTTGGGAAAAAACTTGCAAGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTGCAGGCTAAATATGTGGGAACTGGGCATGCCGACTTAAATAGATTTGAATGGGCTGTGAACATTCAGCGCGATAGCTATGCATCATATGTTGGACACTACCCAATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGAAAATGCTGTTACCTTGCGGCCTTCCTCCAGAAAGGGAAGATGATTGA

Protein sequence

MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHSNLCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARSVRVYLREVRDLQAKARGVSYTKKKRKRPLGPPPSRSGASSCSETANFLGKNLQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD*

Homology

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BLAST of Chy6G109940 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.5e-64
Identity = 113/152 (74.34%), Postives = 133/152 (87.50%), Query Frame = 0


Query: 16  SSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHSNL 75
           S +  LSRYENQKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFLRYLDQFGKTK+H++L
Sbjct: 41  SGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHL 100

Query: 76  CPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARSVRVYLREVR 135
           CPFFGHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GG+ ETNPFGAR+VR+YLREVR
Sbjct: 101 CPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVR 160

Query: 136 DLQAKARGVSYTKKKRKRPLGP-PPSRSGASS 167
           D QAKARG+SY KKKRKRP  P PP++   SS
Sbjct: 161 DSQAKARGISYEKKKRKRPPPPLPPAQPAISS 192

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BLAST of Chy6G109940 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.7e-63
Identity = 113/159 (71.07%), Postives = 134/159 (84.28%), Query Frame = 0


Query: 15  SSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHSN 74
           SS S   SRYENQKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFLRYLDQFGKTK+H+N
Sbjct: 46  SSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTN 105

Query: 75  LCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARSVRVYLREV 134
           +C F+GHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR+VR+YLREV
Sbjct: 106 ICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREV 165

Query: 135 RDLQAKARGVSYTKKKRKRPLGPPPSRSGASSCSETANF 174
           RD+Q+KARGVSY KKKRKRPL P  S S +S+ +    F
Sbjct: 166 RDMQSKARGVSYEKKKRKRPL-PSSSTSSSSAVASHQQF 203

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BLAST of Chy6G109940 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 6.3e-63
Identity = 111/172 (64.53%), Postives = 137/172 (79.65%), Query Frame = 0


Query: 12  PTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKI 71
           P+PSSSS +LSRYE+QKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFL+Y+DQFGKTK+
Sbjct: 69  PSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKV 128

Query: 72  HSNLCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARSVRVYL 131
           H+ +CPF+GHP+P  PC CPLRQAWGSLDAL+GRLRAAYEE+GG  E NPFGAR+VR+YL
Sbjct: 129 HTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYL 188

Query: 132 REVRDLQAKARGVSYTKKKRKRPL------------GPPPSRSGASSCSETA 172
           REVR+ QA+ARG+SY KKKRK+P              PPP    AS   +T+
Sbjct: 189 REVRETQARARGISYEKKKRKKPSSAGAGAGPSSEGSPPPPGGSASGGGDTS 240

[Close]

BLAST of Chy6G109940 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 6.3e-63
Identity = 111/172 (64.53%), Postives = 137/172 (79.65%), Query Frame = 0


Query: 12  PTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKI 71
           P+PSSSS +LSRYE+QKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFL+Y+DQFGKTK+
Sbjct: 69  PSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKV 128

Query: 72  HSNLCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARSVRVYL 131
           H+ +CPF+GHP+P  PC CPLRQAWGSLDAL+GRLRAAYEE+GG  E NPFGAR+VR+YL
Sbjct: 129 HTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYL 188

Query: 132 REVRDLQAKARGVSYTKKKRKRPL------------GPPPSRSGASSCSETA 172
           REVR+ QA+ARG+SY KKKRK+P              PPP    AS   +T+
Sbjct: 189 REVRETQARARGISYEKKKRKKPSSAGAGAGPSSEGSPPPPGGSASGGGDTS 240

[Close]

BLAST of Chy6G109940 vs. ExPASy Swiss-Prot
Match: Q7XDD0 (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 4.5e-61
Identity = 112/158 (70.89%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 15  SSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHSN 74
           S++  + SRYE+QKRRDW +FG Y+ NH PPL+LARC+GAHV+EFLRYLDQFGKTK+H+ 
Sbjct: 32  SAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHAP 91

Query: 75  LCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARSVRVYLREV 134
            CPFFGHP+P  PC CPLRQAWGSLDALVGRLRAAYEE+GG  E NPFGAR+VR+YLREV
Sbjct: 92  ACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREV 151

Query: 135 RDLQAKARGVSYTKKKRKRPLGPPPSRSGASSCSETAN 173
           R+ QA+ARGVSY KKKRK+P  P PS S A++  + AN
Sbjct: 152 REHQARARGVSYEKKKRKKP--PHPS-SAAAAHDDAAN 186

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BLAST of Chy6G109940 vs. ExPASy TrEMBL
Match: A0A0A0L4D7 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134980 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 8.2e-90
Identity = 163/170 (95.88%), Postives = 165/170 (97.06%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITN TPPLALARCTGAHVV+FL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSG C CPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARSVRVYLREVRDLQAKARGVSYTKKKRKRPLGPPPSRSGASSCSET 171
           PFGAR VRVYLREVRDLQAKARG+SY KKKRKRPLGPPPSRSGASSCSET
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSET 170

[Close]

BLAST of Chy6G109940 vs. ExPASy TrEMBL
Match: A0A1S3AX69 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Cucumis melo OX=3656 GN=LOC103483585 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 9.1e-89
Identity = 163/172 (94.77%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSGPC CPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARSVRVYLREVRDLQAKARGVSYTKKKRKRPLG--PPPSRSGASSCSET 171
           PFGAR VRVYLREVRDLQAKARG+SY KKKRKRPLG  PPP RS ASSCSE+
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCSES 172

[Close]

BLAST of Chy6G109940 vs. ExPASy TrEMBL
Match: A0A5D3D237 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001690 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 1.2e-88
Identity = 162/172 (94.19%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAH+VEFL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHIVEFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSGPC CPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARSVRVYLREVRDLQAKARGVSYTKKKRKRPLG--PPPSRSGASSCSET 171
           PFGAR VRVYLREVRDLQAKARG+SY KKKRKRPLG  PPP RS ASSCSE+
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCSES 172

[Close]

BLAST of Chy6G109940 vs. ExPASy TrEMBL
Match: A0A1S3V4Y8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771862 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 3.1e-65
Identity = 116/146 (79.45%), Postives = 132/146 (90.41%), Query Frame = 0


Query: 14  PSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHS 73
           PSSS TTLSRYENQKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFLRYLDQFGKTK+H+
Sbjct: 41  PSSSPTTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT 100

Query: 74  NLCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARSVRVYLRE 133
           +LCPFFGHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR+VR+YLRE
Sbjct: 101 HLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLRE 160

Query: 134 VRDLQAKARGVSYTKKKRKRPLGPPP 160
           VRD QAKARG+SY KKKRKRP  PPP
Sbjct: 161 VRDSQAKARGISYEKKKRKRPQHPPP 186

[Close]

BLAST of Chy6G109940 vs. ExPASy TrEMBL
Match: A0A1S3V4T5 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771862 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 3.1e-65
Identity = 116/146 (79.45%), Postives = 132/146 (90.41%), Query Frame = 0


Query: 14  PSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHS 73
           PSSS TTLSRYENQKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFLRYLDQFGKTK+H+
Sbjct: 41  PSSSPTTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT 100

Query: 74  NLCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARSVRVYLRE 133
           +LCPFFGHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR+VR+YLRE
Sbjct: 101 HLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLRE 160

Query: 134 VRDLQAKARGVSYTKKKRKRPLGPPP 160
           VRD QAKARG+SY KKKRKRP  PPP
Sbjct: 161 VRDSQAKARGISYEKKKRKRPQHPPP 186

[Close]

BLAST of Chy6G109940 vs. NCBI nr
Match: XP_004134409.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus] >KGN56850.1 hypothetical protein Csa_010244 [Cucumis sativus])

HSP 1 Score: 337 bits (864), Expect = 7.39e-115
Identity = 163/170 (95.88%), Postives = 165/170 (97.06%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITN TPPLALARCTGAHVV+FL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSG C CPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARSVRVYLREVRDLQAKARGVSYTKKKRKRPLGPPPSRSGASSCSET 170
           PFGAR VRVYLREVRDLQAKARG+SY KKKRKRPLGPPPSRSGASSCSET
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSET 170

[Close]

BLAST of Chy6G109940 vs. NCBI nr
Match: XP_008438509.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo])

HSP 1 Score: 333 bits (855), Expect = 1.86e-113
Identity = 163/172 (94.77%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSGPC CPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARSVRVYLREVRDLQAKARGVSYTKKKRKRPLG--PPPSRSGASSCSET 170
           PFGAR VRVYLREVRDLQAKARG+SY KKKRKRPLG  PPP RS ASSCSE+
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCSES 172

[Close]

BLAST of Chy6G109940 vs. NCBI nr
Match: KAA0049244.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo var. makuwa] >TYK17314.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo var. makuwa])

HSP 1 Score: 333 bits (854), Expect = 2.64e-113
Identity = 162/172 (94.19%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAH+VEFL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHIVEFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSGPC CPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARSVRVYLREVRDLQAKARGVSYTKKKRKRPLG--PPPSRSGASSCSET 170
           PFGAR VRVYLREVRDLQAKARG+SY KKKRKRPLG  PPP RS ASSCSE+
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCSES 172

[Close]

BLAST of Chy6G109940 vs. NCBI nr
Match: XP_038874756.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida])

HSP 1 Score: 282 bits (721), Expect = 5.02e-93
Identity = 143/165 (86.67%), Postives = 146/165 (88.48%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60
           MDS QNDTV E  PS SSTTLSRYENQKRRDW +FGHYITNHTPPLALA C GAHVVEFL
Sbjct: 1   MDS-QNDTV-EAAPSPSSTTLSRYENQKRRDWNTFGHYITNHTPPLALACCNGAHVVEFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSGPC CPLRQAWGSLDALVGRLRAAYEEHGGNAE N
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCSCPLRQAWGSLDALVGRLRAAYEEHGGNAEFN 120

Query: 121 PFGARSVRVYLREVRDLQAKARGVSYTKKK-RKRPLGPPPSRSGA 164
           PFGAR VR+YLREVRDLQAKARG+SY KKK RK  L PPP R  A
Sbjct: 121 PFGARPVRLYLREVRDLQAKARGISYQKKKKRKLSLSPPPPRQHA 163

[Close]

BLAST of Chy6G109940 vs. NCBI nr
Match: XP_022641006.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X3 [Vigna radiata var. radiata])

HSP 1 Score: 256 bits (653), Expect = 1.62e-82
Identity = 116/146 (79.45%), Postives = 132/146 (90.41%), Query Frame = 0


Query: 14  PSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHS 73
           PSSS TTLSRYENQKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFLRYLDQFGKTK+H+
Sbjct: 41  PSSSPTTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT 100

Query: 74  NLCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARSVRVYLRE 133
           +LCPFFGHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR+VR+YLRE
Sbjct: 101 HLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLRE 160

Query: 134 VRDLQAKARGVSYTKKKRKRPLGPPP 159
           VRD QAKARG+SY KKKRKRP  PPP
Sbjct: 161 VRDSQAKARGISYEKKKRKRPQHPPP 186

[Close]

BLAST of Chy6G109940 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-65
Identity = 113/152 (74.34%), Postives = 133/152 (87.50%), Query Frame = 0


Query: 16  SSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHSNL 75
           S +  LSRYENQKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFLRYLDQFGKTK+H++L
Sbjct: 41  SGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHL 100

Query: 76  CPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARSVRVYLREVR 135
           CPFFGHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GG+ ETNPFGAR+VR+YLREVR
Sbjct: 101 CPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVR 160

Query: 136 DLQAKARGVSYTKKKRKRPLGP-PPSRSGASS 167
           D QAKARG+SY KKKRKRP  P PP++   SS
Sbjct: 161 DSQAKARGISYEKKKRKRPPPPLPPAQPAISS 192

[Close]

BLAST of Chy6G109940 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 244.2 bits (622), Expect = 1.2e-64
Identity = 113/159 (71.07%), Postives = 134/159 (84.28%), Query Frame = 0


Query: 15  SSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYLDQFGKTKIHSN 74
           SS S   SRYENQKRRDW +FG Y+ NH PPL+L+RC+GAHV+EFLRYLDQFGKTK+H+N
Sbjct: 46  SSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTN 105

Query: 75  LCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARSVRVYLREV 134
           +C F+GHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR+VR+YLREV
Sbjct: 106 ICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREV 165

Query: 135 RDLQAKARGVSYTKKKRKRPLGPPPSRSGASSCSETANF 174
           RD+Q+KARGVSY KKKRKRPL P  S S +S+ +    F
Sbjct: 166 RDMQSKARGVSYEKKKRKRPL-PSSSTSSSSAVASHQQF 203

[Close]

BLAST of Chy6G109940 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 221.5 bits (563), Expect = 8.2e-58
Identity = 105/158 (66.46%), Postives = 126/158 (79.75%), Query Frame = 0


Query: 2   DSLQNDTV--IEPTP---SSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHV 61
           DS ++D V   +P P   SS   T SRYE+QKRRDW +F  Y+ NH PPLAL+RC+GAHV
Sbjct: 5   DSGRSDPVKGDDPGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHV 64

Query: 62  VEFLRYLDQFGKTKIHSNLCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGN 121
           +EFL+YLDQFGKTK+H   CP+FGH  P  PC CPL+QAWGSLDAL+GRLRAAYEE+GG 
Sbjct: 65  IEFLKYLDQFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGR 124

Query: 122 AETNPFGARSVRVYLREVRDLQAKARGVSYTKKKRKRP 155
            ++NPF AR+VR+YLREVR+ QAKARG+ Y KKKRKRP
Sbjct: 125 PDSNPFAARAVRIYLREVRESQAKARGIPYEKKKRKRP 162

[Close]

BLAST of Chy6G109940 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 216.9 bits (551), Expect = 2.0e-56
Identity = 101/149 (67.79%), Postives = 123/149 (82.55%), Query Frame = 0


Query: 6   NDTVIEPTPSSSST--TLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLRYL 65
           N ++   TPSS S+  + SRYENQKRRDW +F  Y+ NH PPL+LA C+GAHV++FLRYL
Sbjct: 14  NTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYL 73

Query: 66  DQFGKTKIHSNLCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFG 125
           DQFGKTK+H   C FFG P+P  PC CPLRQAWGSLDAL+GRLRAAYEE+GG  ET+PFG
Sbjct: 74  DQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFG 133

Query: 126 ARSVRVYLREVRDLQAKARGVSYTKKKRK 153
           +RSVR++LREVRD QAK+RGVSY KK+++
Sbjct: 134 SRSVRIFLREVRDFQAKSRGVSYEKKRKR 162

[Close]

BLAST of Chy6G109940 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-55
Identity = 104/165 (63.03%), Postives = 124/165 (75.15%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSST--TLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVE 60
           MD + +     P  S+  T  + SRYENQKRRDW +F  Y+ NH PPL+L  C+GAHV+E
Sbjct: 1   MDLISHQPNKNPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLE 60

Query: 61  FLRYLDQFGKTKIHSNLCPFFGHPSPSGPCICPLRQAWGSLDALVGRLRAAYEEHGGNAE 120
           FLRYLDQFGKTK+H   C FFG P+P  PC CPLRQAWGSLDAL+GRLRAAYEE+GG  E
Sbjct: 61  FLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPE 120

Query: 121 TNPFGARSVRVYLREVRDLQAKARGVSYTKKK----RKRPLGPPP 160
            NPFG+R+VR++LREVRD QAKARGVSY KK+    R++P   PP
Sbjct: 121 ANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKRVNRQKPQTQPP 165

The following BLAST results are available for this feature:

BLAST of Chy6G109940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW68	1.5e-64	74.34	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
O82268	1.7e-63	71.07	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XAV5	6.3e-63	64.53	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	6.3e-63	64.53	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
Q7XDD0	4.5e-61	70.89	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]

BLAST of Chy6G109940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4D7	8.2e-90	95.88	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134980 PE=3 S...	[more]
A0A1S3AX69	9.1e-89	94.77	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Cucumis melo OX=3656 GN=LOC1034835...	[more]
A0A5D3D237	1.2e-88	94.19	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3V4Y8	3.1e-65	79.45	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 OS=Vigna radiata var. radi...	[more]
A0A1S3V4T5	3.1e-65	79.45	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X2 OS=Vigna radiata var. radi...	[more]

BLAST of Chy6G109940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134409.1	7.39e-115	95.88	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus] >KGN56850.1 hypothe...	[more]
XP_008438509.1	1.86e-113	94.77	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo]	[more]
KAA0049244.1	2.64e-113	94.19	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo var. makuwa] >TYK17314....	[more]
XP_038874756.1	5.02e-93	86.67	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida]	[more]
XP_022641006.1	1.62e-82	79.45	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X3 [Vigna radiata var. radiat...	[more]

BLAST of Chy6G109940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23290.2	1.1e-65	74.34	Protein of unknown function (DUF640)	[more]
AT2G31160.1	1.2e-64	71.07	Protein of unknown function (DUF640)	[more]
AT1G07090.1	8.2e-58	66.46	Protein of unknown function (DUF640)	[more]
AT3G04510.1	2.0e-56	67.79	Protein of unknown function (DUF640)	[more]
AT5G28490.1	1.7e-55	63.03	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 16..136 e-value: 2.4E-60 score: 202.2
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 23..150 score: 70.920471
IPR009846	Splicing factor 3B subunit 5/RDS3 complex subunit 10	PFAM	PF07189	SF3b10	coord: 182..259 e-value: 1.4E-34 score: 118.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..168
None	No IPR available	PANTHER	PTHR31165:SF65	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-LIKE	coord: 13..154
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 13..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G109940.1	Chy6G109940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0090698	post-embryonic plant morphogenesis
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus