Chy6G109820 (gene) Cucumber (hystrix) v1

Overview
NameChy6G109820
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionEmbryo sac development arrest protein
LocationchrH06: 3035201 .. 3035590 (+)
RNA-Seq ExpressionChy6G109820
SyntenyChy6G109820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTTCATTTCCACAGCCGTGGGCTGTTATCGGCTGGGCCGTCCAAAAAGCGTAAGGAGCCATCCACGCCTTCGGCTTCTAAAGCCGGTGAACCTTCGGTTTCATCTAACCGGCTTCTAGCCGGGTACATGGCTTATGAGTTTCTAACAAAAGGGACTCTATTTGGGCGGAAGTTCGACCCGCCTCGAGACGAAGCAACCCCATCCGCCGCCGCCGCAGTCACCCAGTGGAAGAAGCCGAAATCGGAAGCCGCACCGCCCGAGATCTTGAAGAAAGAGCATCAGATTCAGAGTTACGCCGAGGTGGCAAACATCCTCAAGACTACTGGGTCCCACATATCCGGAATCGTTAACCCGACCCAACTGAGTCGGTGGCTTCAAAAGTGA

mRNA sequence

ATGAGTTTTCATTTCCACAGCCGTGGGCTGTTATCGGCTGGGCCGTCCAAAAAGCGTAAGGAGCCATCCACGCCTTCGGCTTCTAAAGCCGGTGAACCTTCGGTTTCATCTAACCGGCTTCTAGCCGGGTACATGGCTTATGAGTTTCTAACAAAAGGGACTCTATTTGGGCGGAAGTTCGACCCGCCTCGAGACGAAGCAACCCCATCCGCCGCCGCCGCAGTCACCCAGTGGAAGAAGCCGAAATCGGAAGCCGCACCGCCCGAGATCTTGAAGAAAGAGCATCAGATTCAGAGTTACGCCGAGGTGGCAAACATCCTCAAGACTACTGGGTCCCACATATCCGGAATCGTTAACCCGACCCAACTGAGTCGGTGGCTTCAAAAGTGA

Coding sequence (CDS)

ATGAGTTTTCATTTCCACAGCCGTGGGCTGTTATCGGCTGGGCCGTCCAAAAAGCGTAAGGAGCCATCCACGCCTTCGGCTTCTAAAGCCGGTGAACCTTCGGTTTCATCTAACCGGCTTCTAGCCGGGTACATGGCTTATGAGTTTCTAACAAAAGGGACTCTATTTGGGCGGAAGTTCGACCCGCCTCGAGACGAAGCAACCCCATCCGCCGCCGCCGCAGTCACCCAGTGGAAGAAGCCGAAATCGGAAGCCGCACCGCCCGAGATCTTGAAGAAAGAGCATCAGATTCAGAGTTACGCCGAGGTGGCAAACATCCTCAAGACTACTGGGTCCCACATATCCGGAATCGTTAACCCGACCCAACTGAGTCGGTGGCTTCAAAAGTGA

Protein sequence

MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKFDPPRDEATPSAAAAVTQWKKPKSEAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVNPTQLSRWLQK*
Homology
BLAST of Chy6G109820 vs. ExPASy TrEMBL
Match: A0A0A0L4C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134830 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.1e-62
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0

Query: 1   MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKF 60
           MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKF
Sbjct: 1   MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKF 60

Query: 61  DPPRDEATPSAA-AAVTQWKKPKSEAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVN 120
           DPPRDEATPSAA AAV QWKKPKS+AAPPEILKKEHQIQSYAEVANILKTTGSHISGIVN
Sbjct: 61  DPPRDEATPSAASAAVIQWKKPKSDAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVN 120

Query: 121 PTQLSRWLQK 130
           PTQL RWLQK
Sbjct: 121 PTQLGRWLQK 130

BLAST of Chy6G109820 vs. ExPASy TrEMBL
Match: A0A5A7U1L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001830 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.5e-55
Identity = 119/132 (90.15%), Postives = 123/132 (93.18%), Query Frame = 0

Query: 1   MSFHFHSRGLLSAGPSKKRKEPSTPS-ASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRK 60
           MSFHFHSRGLLSAGPSKKRKEPSTP+  +KAGEPSV SNRLLAGYMAYEFLTKGTLFGRK
Sbjct: 1   MSFHFHSRGLLSAGPSKKRKEPSTPAPPNKAGEPSVLSNRLLAGYMAYEFLTKGTLFGRK 60

Query: 61  FDPPRDEATPSAAAAVTQWKKPKSEAAPPEILKKEH--QIQSYAEVANILKTTGSHISGI 120
           FDP RDEATPS +AAV+QWKKPK EAAPPEILKKEH  QIQSYAEVANILKTTGSHISGI
Sbjct: 61  FDPTRDEATPS-SAAVSQWKKPKFEAAPPEILKKEHQNQIQSYAEVANILKTTGSHISGI 120

Query: 121 VNPTQLSRWLQK 130
           VNPTQL RWLQK
Sbjct: 121 VNPTQLGRWLQK 131

BLAST of Chy6G109820 vs. ExPASy TrEMBL
Match: A0A1S3AWH5 (uncharacterized protein LOC103483571 OS=Cucumis melo OX=3656 GN=LOC103483571 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.5e-55
Identity = 119/132 (90.15%), Postives = 123/132 (93.18%), Query Frame = 0

Query: 1   MSFHFHSRGLLSAGPSKKRKEPSTPS-ASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRK 60
           MSFHFHSRGLLSAGPSKKRKEPSTP+  +KAGEPSV SNRLLAGYMAYEFLTKGTLFGRK
Sbjct: 1   MSFHFHSRGLLSAGPSKKRKEPSTPAPPNKAGEPSVLSNRLLAGYMAYEFLTKGTLFGRK 60

Query: 61  FDPPRDEATPSAAAAVTQWKKPKSEAAPPEILKKEH--QIQSYAEVANILKTTGSHISGI 120
           FDP RDEATPS +AAV+QWKKPK EAAPPEILKKEH  QIQSYAEVANILKTTGSHISGI
Sbjct: 61  FDPTRDEATPS-SAAVSQWKKPKFEAAPPEILKKEHQNQIQSYAEVANILKTTGSHISGI 120

Query: 121 VNPTQLSRWLQK 130
           VNPTQL RWLQK
Sbjct: 121 VNPTQLGRWLQK 131

BLAST of Chy6G109820 vs. ExPASy TrEMBL
Match: A0A6J1E960 (uncharacterized protein LOC111431827 OS=Cucurbita moschata OX=3662 GN=LOC111431827 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.1e-46
Identity = 103/129 (79.84%), Postives = 108/129 (83.72%), Query Frame = 0

Query: 1   MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKF 60
           MSFHFHSRGLL AGPS+KRKE   P+A KA EP VSSNRLLAGYMAYEFLTKGT+ GR+F
Sbjct: 1   MSFHFHSRGLLPAGPSRKRKE---PAALKASEPPVSSNRLLAGYMAYEFLTKGTILGREF 60

Query: 61  DPPRDEATPSAAAAVTQWKKPKSEAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVNP 120
           +P R EA PSAAA   QWKK KSEAAPPEILKKEHQIQSY EVA ILKTTG HI  IVNP
Sbjct: 61  NPGRAEAIPSAAA---QWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGGHIPEIVNP 120

Query: 121 TQLSRWLQK 130
           TQL RWLQK
Sbjct: 121 TQLGRWLQK 123

BLAST of Chy6G109820 vs. ExPASy TrEMBL
Match: A0A6J1IWN8 (uncharacterized protein LOC111479265 OS=Cucurbita maxima OX=3661 GN=LOC111479265 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.6e-44
Identity = 100/129 (77.52%), Postives = 107/129 (82.95%), Query Frame = 0

Query: 1   MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKF 60
           MSFHFH RGLL  GPS+KRKE   P+A KA EP VSSNRLLAGYMAYEFLTKGT+ GR+F
Sbjct: 1   MSFHFHIRGLLPPGPSRKRKE---PAALKASEPPVSSNRLLAGYMAYEFLTKGTILGREF 60

Query: 61  DPPRDEATPSAAAAVTQWKKPKSEAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVNP 120
           +P + EA PSAAA   QWKK KSEAAPPEILKKEHQIQSY EVA ILKTTG+HI  IVNP
Sbjct: 61  NPGQAEAIPSAAA---QWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGAHIPEIVNP 120

Query: 121 TQLSRWLQK 130
           TQL RWLQK
Sbjct: 121 TQLGRWLQK 123

BLAST of Chy6G109820 vs. NCBI nr
Match: KGN56835.1 (hypothetical protein Csa_009887 [Cucumis sativus])

HSP 1 Score: 245 bits (626), Expect = 1.31e-81
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0

Query: 1   MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKF 60
           MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKF
Sbjct: 1   MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKF 60

Query: 61  DPPRDEATPSAA-AAVTQWKKPKSEAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVN 120
           DPPRDEATPSAA AAV QWKKPKS+AAPPEILKKEHQIQSYAEVANILKTTGSHISGIVN
Sbjct: 61  DPPRDEATPSAASAAVIQWKKPKSDAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVN 120

Query: 121 PTQLSRWLQK 129
           PTQL RWLQK
Sbjct: 121 PTQLGRWLQK 130

BLAST of Chy6G109820 vs. NCBI nr
Match: XP_008438490.1 (PREDICTED: uncharacterized protein LOC103483571 [Cucumis melo] >KAA0049230.1 uncharacterized protein E6C27_scaffold171G004700 [Cucumis melo var. makuwa] >TYK17328.1 uncharacterized protein E5676_scaffold434G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 223 bits (568), Expect = 9.49e-73
Identity = 119/132 (90.15%), Postives = 123/132 (93.18%), Query Frame = 0

Query: 1   MSFHFHSRGLLSAGPSKKRKEPSTPSA-SKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRK 60
           MSFHFHSRGLLSAGPSKKRKEPSTP+  +KAGEPSV SNRLLAGYMAYEFLTKGTLFGRK
Sbjct: 1   MSFHFHSRGLLSAGPSKKRKEPSTPAPPNKAGEPSVLSNRLLAGYMAYEFLTKGTLFGRK 60

Query: 61  FDPPRDEATPSAAAAVTQWKKPKSEAAPPEILKKEHQ--IQSYAEVANILKTTGSHISGI 120
           FDP RDEATPS+AA V+QWKKPK EAAPPEILKKEHQ  IQSYAEVANILKTTGSHISGI
Sbjct: 61  FDPTRDEATPSSAA-VSQWKKPKFEAAPPEILKKEHQNQIQSYAEVANILKTTGSHISGI 120

Query: 121 VNPTQLSRWLQK 129
           VNPTQL RWLQK
Sbjct: 121 VNPTQLGRWLQK 131

BLAST of Chy6G109820 vs. NCBI nr
Match: XP_023526927.1 (uncharacterized protein LOC111790299 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194 bits (492), Expect = 2.81e-61
Identity = 104/129 (80.62%), Postives = 109/129 (84.50%), Query Frame = 0

Query: 1   MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKF 60
           MSFHFHSRGLL AGPS+KRKEP+   A KA EPSVSSNRLLAGYMAYEFLTKGT+ GR+F
Sbjct: 1   MSFHFHSRGLLPAGPSRKRKEPA---ALKASEPSVSSNRLLAGYMAYEFLTKGTILGREF 60

Query: 61  DPPRDEATPSAAAAVTQWKKPKSEAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVNP 120
           +P R EA PSAAA   QWKK KSEAAPPEILKKEHQIQSY EVA ILKTTG HI  IVNP
Sbjct: 61  NPGRAEAIPSAAA---QWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGGHIPEIVNP 120

Query: 121 TQLSRWLQK 129
           TQL RWLQK
Sbjct: 121 TQLGRWLQK 123

BLAST of Chy6G109820 vs. NCBI nr
Match: XP_022924296.1 (uncharacterized protein LOC111431827 [Cucurbita moschata] >KAG6582401.1 hypothetical protein SDJN03_22403, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018804.1 hypothetical protein SDJN02_20677, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192 bits (487), Expect = 1.63e-60
Identity = 103/129 (79.84%), Postives = 108/129 (83.72%), Query Frame = 0

Query: 1   MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKF 60
           MSFHFHSRGLL AGPS+KRKEP+   A KA EP VSSNRLLAGYMAYEFLTKGT+ GR+F
Sbjct: 1   MSFHFHSRGLLPAGPSRKRKEPA---ALKASEPPVSSNRLLAGYMAYEFLTKGTILGREF 60

Query: 61  DPPRDEATPSAAAAVTQWKKPKSEAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVNP 120
           +P R EA PSAAA   QWKK KSEAAPPEILKKEHQIQSY EVA ILKTTG HI  IVNP
Sbjct: 61  NPGRAEAIPSAAA---QWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGGHIPEIVNP 120

Query: 121 TQLSRWLQK 129
           TQL RWLQK
Sbjct: 121 TQLGRWLQK 123

BLAST of Chy6G109820 vs. NCBI nr
Match: XP_022979583.1 (uncharacterized protein LOC111479265 [Cucurbita maxima])

HSP 1 Score: 186 bits (473), Expect = 2.21e-58
Identity = 100/129 (77.52%), Postives = 107/129 (82.95%), Query Frame = 0

Query: 1   MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKF 60
           MSFHFH RGLL  GPS+KRKEP+   A KA EP VSSNRLLAGYMAYEFLTKGT+ GR+F
Sbjct: 1   MSFHFHIRGLLPPGPSRKRKEPA---ALKASEPPVSSNRLLAGYMAYEFLTKGTILGREF 60

Query: 61  DPPRDEATPSAAAAVTQWKKPKSEAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVNP 120
           +P + EA PSAAA   QWKK KSEAAPPEILKKEHQIQSY EVA ILKTTG+HI  IVNP
Sbjct: 61  NPGQAEAIPSAAA---QWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGAHIPEIVNP 120

Query: 121 TQLSRWLQK 129
           TQL RWLQK
Sbjct: 121 TQLGRWLQK 123

BLAST of Chy6G109820 vs. TAIR 10
Match: AT5G44060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 84.7 bits (208), Expect = 5.9e-17
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 0

Query: 22  PSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKFDPPRDEATPSAAAAVTQWKKP 81
           P+T +     EP V SN+LLAGY+A+EFL  GTLFG  ++P + +A P      TQ   P
Sbjct: 48  PTTTATVALAEP-VCSNQLLAGYLAHEFLNNGTLFGELWNPTKAQAGP----LTTQSIDP 107

Query: 82  KSEAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVNPTQLSRWLQ 129
           +      +I   +H+ + Y EVANIL+  G+H+ GIVNP+QL+R+L+
Sbjct: 108 RKNKPSHDIEPSDHKRRRYVEVANILRVDGTHLPGIVNPSQLARFLK 149

BLAST of Chy6G109820 vs. TAIR 10
Match: AT3G23440.1 (embryo sac development arrest 6 )

HSP 1 Score: 75.1 bits (183), Expect = 4.7e-14
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 0

Query: 14  GPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKFDPPRDEATPSAAA 73
           G S+KRK+  +     A     + N LLAGYMA+E+LT GT+ GRK      E  P  + 
Sbjct: 10  GASRKRKDTESDLREAA-----TPNWLLAGYMAHEYLTCGTMLGRKLYSGWAEVGPLVSP 69

Query: 74  AVTQWKKPKSEAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVNPTQLSRWLQ 129
           +  Q ++ K               QSY+EVA++ KT G+H+ G+VNPTQL++W+Q
Sbjct: 70  SPLQSREVKKAR------------QSYSEVASVFKTDGNHVPGVVNPTQLAKWIQ 107

BLAST of Chy6G109820 vs. TAIR 10
Match: AT1G04000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-12
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = 0

Query: 23  STPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKFDPPRDEATPSAAAAVTQWKKPK 82
           S  S++ A EP  S+  +LAGY+++E+LT+GTLFG +++  R +A  S         KP 
Sbjct: 55  SKKSSTAAAEPIGSNQLMLAGYLSHEYLTQGTLFGEQWNQARAQAESSKI-------KPS 114

Query: 83  SEAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVNPTQLSRWLQ 129
               P E  + E + + Y EVAN+L++ G+ + GIVNP QL+R+L+
Sbjct: 115 HTVEPAE--ECEPKRKRYREVANLLRSDGAQLPGIVNPAQLARFLK 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L4C16.1e-6296.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134830 PE=4 SV=1[more]
A0A5A7U1L22.5e-5590.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AWH52.5e-5590.15uncharacterized protein LOC103483571 OS=Cucumis melo OX=3656 GN=LOC103483571 PE=... [more]
A0A6J1E9606.1e-4679.84uncharacterized protein LOC111431827 OS=Cucurbita moschata OX=3662 GN=LOC1114318... [more]
A0A6J1IWN82.6e-4477.52uncharacterized protein LOC111479265 OS=Cucurbita maxima OX=3661 GN=LOC111479265... [more]
Match NameE-valueIdentityDescription
KGN56835.11.31e-8196.92hypothetical protein Csa_009887 [Cucumis sativus][more]
XP_008438490.19.49e-7390.15PREDICTED: uncharacterized protein LOC103483571 [Cucumis melo] >KAA0049230.1 unc... [more]
XP_023526927.12.81e-6180.62uncharacterized protein LOC111790299 [Cucurbita pepo subsp. pepo][more]
XP_022924296.11.63e-6079.84uncharacterized protein LOC111431827 [Cucurbita moschata] >KAG6582401.1 hypothet... [more]
XP_022979583.12.21e-5877.52uncharacterized protein LOC111479265 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT5G44060.15.9e-1743.93unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G23440.14.7e-1439.13embryo sac development arrest 6 [more]
AT1G04000.11.1e-1239.62unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..87
NoneNo IPR availablePANTHERPTHR34657EMBRYO SAC DEVELOPMENT ARREST 6coord: 20..128

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy6G109820.1Chy6G109820.1mRNA