Chy6G109820 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTTTTCATTTCCACAGCCGTGGGCTGTTATCGGCTGGGCCGTCCAAAAAGCGTAAGGAGCCATCCACGCCTTCGGCTTCTAAAGCCGGTGAACCTTCGGTTTCATCTAACCGGCTTCTAGCCGGGTACATGGCTTATGAGTTTCTAACAAAAGGGACTCTATTTGGGCGGAAGTTCGACCCGCCTCGAGACGAAGCAACCCCATCCGCCGCCGCCGCAGTCACCCAGTGGAAGAAGCCGAAATCGGAAGCCGCACCGCCCGAGATCTTGAAGAAAGAGCATCAGATTCAGAGTTACGCCGAGGTGGCAAACATCCTCAAGACTACTGGGTCCCACATATCCGGAATCGTTAACCCGACCCAACTGAGTCGGTGGCTTCAAAAGTGA ATGAGTTTTCATTTCCACAGCCGTGGGCTGTTATCGGCTGGGCCGTCCAAAAAGCGTAAGGAGCCATCCACGCCTTCGGCTTCTAAAGCCGGTGAACCTTCGGTTTCATCTAACCGGCTTCTAGCCGGGTACATGGCTTATGAGTTTCTAACAAAAGGGACTCTATTTGGGCGGAAGTTCGACCCGCCTCGAGACGAAGCAACCCCATCCGCCGCCGCCGCAGTCACCCAGTGGAAGAAGCCGAAATCGGAAGCCGCACCGCCCGAGATCTTGAAGAAAGAGCATCAGATTCAGAGTTACGCCGAGGTGGCAAACATCCTCAAGACTACTGGGTCCCACATATCCGGAATCGTTAACCCGACCCAACTGAGTCGGTGGCTTCAAAAGTGA ATGAGTTTTCATTTCCACAGCCGTGGGCTGTTATCGGCTGGGCCGTCCAAAAAGCGTAAGGAGCCATCCACGCCTTCGGCTTCTAAAGCCGGTGAACCTTCGGTTTCATCTAACCGGCTTCTAGCCGGGTACATGGCTTATGAGTTTCTAACAAAAGGGACTCTATTTGGGCGGAAGTTCGACCCGCCTCGAGACGAAGCAACCCCATCCGCCGCCGCCGCAGTCACCCAGTGGAAGAAGCCGAAATCGGAAGCCGCACCGCCCGAGATCTTGAAGAAAGAGCATCAGATTCAGAGTTACGCCGAGGTGGCAAACATCCTCAAGACTACTGGGTCCCACATATCCGGAATCGTTAACCCGACCCAACTGAGTCGGTGGCTTCAAAAGTGA MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKFDPPRDEATPSAAAAVTQWKKPKSEAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVNPTQLSRWLQK* Homology
BLAST of Chy6G109820 vs. ExPASy TrEMBL
Match: A0A0A0L4C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134830 PE=4 SV=1) HSP 1 Score: 246.5 bits (628), Expect = 6.1e-62 Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0
BLAST of Chy6G109820 vs. ExPASy TrEMBL
Match: A0A5A7U1L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001830 PE=4 SV=1) HSP 1 Score: 224.6 bits (571), Expect = 2.5e-55 Identity = 119/132 (90.15%), Postives = 123/132 (93.18%), Query Frame = 0
BLAST of Chy6G109820 vs. ExPASy TrEMBL
Match: A0A1S3AWH5 (uncharacterized protein LOC103483571 OS=Cucumis melo OX=3656 GN=LOC103483571 PE=4 SV=1) HSP 1 Score: 224.6 bits (571), Expect = 2.5e-55 Identity = 119/132 (90.15%), Postives = 123/132 (93.18%), Query Frame = 0
BLAST of Chy6G109820 vs. ExPASy TrEMBL
Match: A0A6J1E960 (uncharacterized protein LOC111431827 OS=Cucurbita moschata OX=3662 GN=LOC111431827 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 6.1e-46 Identity = 103/129 (79.84%), Postives = 108/129 (83.72%), Query Frame = 0
BLAST of Chy6G109820 vs. ExPASy TrEMBL
Match: A0A6J1IWN8 (uncharacterized protein LOC111479265 OS=Cucurbita maxima OX=3661 GN=LOC111479265 PE=4 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 2.6e-44 Identity = 100/129 (77.52%), Postives = 107/129 (82.95%), Query Frame = 0
BLAST of Chy6G109820 vs. NCBI nr
Match: KGN56835.1 (hypothetical protein Csa_009887 [Cucumis sativus]) HSP 1 Score: 245 bits (626), Expect = 1.31e-81 Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0
BLAST of Chy6G109820 vs. NCBI nr
Match: XP_008438490.1 (PREDICTED: uncharacterized protein LOC103483571 [Cucumis melo] >KAA0049230.1 uncharacterized protein E6C27_scaffold171G004700 [Cucumis melo var. makuwa] >TYK17328.1 uncharacterized protein E5676_scaffold434G001830 [Cucumis melo var. makuwa]) HSP 1 Score: 223 bits (568), Expect = 9.49e-73 Identity = 119/132 (90.15%), Postives = 123/132 (93.18%), Query Frame = 0
BLAST of Chy6G109820 vs. NCBI nr
Match: XP_023526927.1 (uncharacterized protein LOC111790299 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 194 bits (492), Expect = 2.81e-61 Identity = 104/129 (80.62%), Postives = 109/129 (84.50%), Query Frame = 0
BLAST of Chy6G109820 vs. NCBI nr
Match: XP_022924296.1 (uncharacterized protein LOC111431827 [Cucurbita moschata] >KAG6582401.1 hypothetical protein SDJN03_22403, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018804.1 hypothetical protein SDJN02_20677, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 192 bits (487), Expect = 1.63e-60 Identity = 103/129 (79.84%), Postives = 108/129 (83.72%), Query Frame = 0
BLAST of Chy6G109820 vs. NCBI nr
Match: XP_022979583.1 (uncharacterized protein LOC111479265 [Cucurbita maxima]) HSP 1 Score: 186 bits (473), Expect = 2.21e-58 Identity = 100/129 (77.52%), Postives = 107/129 (82.95%), Query Frame = 0
BLAST of Chy6G109820 vs. TAIR 10
Match: AT5G44060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 84.7 bits (208), Expect = 5.9e-17 Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 0
BLAST of Chy6G109820 vs. TAIR 10
Match: AT3G23440.1 (embryo sac development arrest 6 ) HSP 1 Score: 75.1 bits (183), Expect = 4.7e-14 Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 0
BLAST of Chy6G109820 vs. TAIR 10
Match: AT1G04000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 70.5 bits (171), Expect = 1.1e-12 Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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