Chy6G108610 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G108610
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	60S ribosomal protein L37a
Location	chrH06: 2217569 .. 2218307 (+)
RNA-Seq Expression	Chy6G108610
Synteny	Chy6G108610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTCTGCGGAAAGGTTAGTTTCTTTATTCAGCATATAGTTTGTTGTATTTAGTGATTACAAGTAGTTCGTCGGTGACTGAAGAAATTGTTTGGTTTTGGTGGTTACAAGTAGTTCCTTGTATGGATGTTGATCAACGTGTTATATAGCTTATTGAATTGTGATGCAGGCCCTATTAGGATTGACATTTCAAGGAATGTAGAATTGGATTAAAAAGTATATTTTTCCCTTGATAGGAAAGGACAATATCGTTAGTATTTATTTTAATCATATTTGTGATGGTTTCGTCCATAATTCTTGCAACTATTGTTAGACCTCGACATTCTTGTGTTTATAGTGAAAACTGACACTATACCTTCCTCTGCCTTTTGGCTAAGATCAATTGTATTGAAAACATCTAGTTGTCAATGATATTTTAATTCTATGAATCTAATCTATGATTGCTGTTCCGAACCTCTTACAGTATGCAGTGAAGAGGAAGGCTGTTGGGATATGGGGTTGCAAGGACTGCGGAAAGGTGAAAGCCGGAGGTGCCTACACATTGAAGTGAGTACAGTTGATTCTTGTTTTGCAACGAAGTATCTGTGGTTTAAAATTCTTTTCAAGGTTTTGATTGCTGTCTCTTTCTTTTGTTTTTGGCAGCACTGCGAGTGCGGTAACCGTTAGGAGCACAATCCGAAGGTTGAGGGAGCAGACTGAGAGTTAA

mRNA sequence

ATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTCTGCGGAAAGTATGCAGTGAAGAGGAAGGCTGTTGGGATATGGGGTTGCAAGGACTGCGGAAAGGTGAAAGCCGGAGGTGCCTACACATTGAACACTGCGAGTGCGGTAACCGTTAGGAGCACAATCCGAAGGTTGAGGGAGCAGACTGAGAGTTAA

Coding sequence (CDS)

ATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTCTGCGGAAAGTATGCAGTGAAGAGGAAGGCTGTTGGGATATGGGGTTGCAAGGACTGCGGAAAGGTGAAAGCCGGAGGTGCCTACACATTGAACACTGCGAGTGCGGTAACCGTTAGGAGCACAATCCGAAGGTTGAGGGAGCAGACTGAGAGTTAA

Protein sequence

MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES*

Homology

[Close]

BLAST of Chy6G108610 vs. ExPASy Swiss-Prot
Match: Q9XHE4 (60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 5.0e-30
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60
          MEVSQHSKYFCEFCGKYAVKRKAVGIWGCK CGKVKAGGAYTLNTASAVTVRSTIRRLRE
Sbjct: 29 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACGKVKAGGAYTLNTASAVTVRSTIRRLRE 88

Query: 61 QTES 65
          QTES
Sbjct: 89 QTES 92

[Close]

BLAST of Chy6G108610 vs. ExPASy Swiss-Prot
Match: P0DKK1 (60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 6.6e-30
Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60
          MEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLRE
Sbjct: 29 MEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLRE 88

Query: 61 QTES 65
          QTE+
Sbjct: 89 QTEA 92

[Close]

BLAST of Chy6G108610 vs. ExPASy Swiss-Prot
Match: P0DKK2 (60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0557000 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 6.6e-30
Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60
          MEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLRE
Sbjct: 29 MEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLRE 88

Query: 61 QTES 65
          QTE+
Sbjct: 89 QTEA 92

[Close]

BLAST of Chy6G108610 vs. ExPASy Swiss-Prot
Match: Q9SRK6 (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37AB PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-29
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60
          MEVSQH+KYFCEFCGKY+VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLRE
Sbjct: 29 MEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLRE 88

Query: 61 QTES 65
          QTES
Sbjct: 89 QTES 92

[Close]

BLAST of Chy6G108610 vs. ExPASy Swiss-Prot
Match: Q8RXU5 (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37AC PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.3e-29
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60
          MEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLRE
Sbjct: 29 MEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLRE 88

Query: 61 QTE 64
          Q E
Sbjct: 89 QIE 91

[Close]

BLAST of Chy6G108610 vs. ExPASy TrEMBL
Match: A0A1U7XSD1 (60S ribosomal protein L37a OS=Nicotiana sylvestris OX=4096 GN=LOC104239566 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60
          MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE
Sbjct: 29 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 88

Query: 61 QTES 65
          QTES
Sbjct: 89 QTES 92

[Close]

BLAST of Chy6G108610 vs. ExPASy TrEMBL
Match: A0A6J1ICH2 (60S ribosomal protein L37a OS=Cucurbita maxima OX=3661 GN=LOC111471808 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60
          MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE
Sbjct: 29 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 88

Query: 61 QTES 65
          QTES
Sbjct: 89 QTES 92

[Close]

BLAST of Chy6G108610 vs. ExPASy TrEMBL
Match: K4CND1 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101251802 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60
          MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE
Sbjct: 29 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 88

Query: 61 QTES 65
          QTES
Sbjct: 89 QTES 92

[Close]

BLAST of Chy6G108610 vs. ExPASy TrEMBL
Match: A0A1U8LTA9 (60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=LOC107929672 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60
          MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE
Sbjct: 29 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 88

Query: 61 QTES 65
          QTES
Sbjct: 89 QTES 92

[Close]

BLAST of Chy6G108610 vs. ExPASy TrEMBL
Match: A0A1U8IV94 (60S ribosomal protein L37a isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107900799 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60
           MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE
Sbjct: 46  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 105

Query: 61  QTES 65
           QTES
Sbjct: 106 QTES 109

[Close]

BLAST of Chy6G108610 vs. NCBI nr
Match: KAG7013410.1 (60S ribosomal protein L37a [Cucurbita argyrosperma subsp. argyrosperma] >KZV57946.1 hypothetical protein F511_12102 [Dorcoceras hygrometricum] >MBA0593300.1 hypothetical protein [Gossypium raimondii] >MBA0638365.1 hypothetical protein [Gossypium davidsonii] >MBA0646507.1 hypothetical protein [Gossypium klotzschianum] >MBA0684759.1 hypothetical protein [Gossypium aridum] >MBA0763754.1 hypothetical protein [Gossypium trilobum] >MBA0796613.1 hypothetical protein [Gossypium harknessii] >MBA0845110.1 hypothetical protein [Gossypium armourianum] >MBA0880761.1 hypothetical protein [Gossypium schwendimanii] >TYK17442.1 60S ribosomal protein L37a isoform X1 [Cucumis melo var. makuwa] >GFY92044.1 zinc-binding ribosomal protein family protein [Actinidia rufa])

HSP 1 Score: 134 bits (338), Expect = 1.01e-39
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60
          MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE
Sbjct: 1  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60

Query: 61 QTES 64
          QTES
Sbjct: 61 QTES 64

[Close]

BLAST of Chy6G108610 vs. NCBI nr
Match: EYU42328.1 (hypothetical protein MIMGU_mgv1a0171311mg, partial [Erythranthe guttata])

HSP 1 Score: 134 bits (338), Expect = 1.45e-39
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60
          MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE
Sbjct: 14 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 73

Query: 61 QTES 64
          QTES
Sbjct: 74 QTES 77

[Close]

BLAST of Chy6G108610 vs. NCBI nr
Match: XP_024987410.1 (60S ribosomal protein L37a-like, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 134 bits (338), Expect = 1.67e-39
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60
          MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE
Sbjct: 19 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 78

Query: 61 QTES 64
          QTES
Sbjct: 79 QTES 82

[Close]

BLAST of Chy6G108610 vs. NCBI nr
Match: KAE9459940.1 (hypothetical protein C3L33_08144, partial [Rhododendron williamsianum])

HSP 1 Score: 134 bits (338), Expect = 1.77e-39
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60
          MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE
Sbjct: 21 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 80

Query: 61 QTES 64
          QTES
Sbjct: 81 QTES 84

[Close]

BLAST of Chy6G108610 vs. NCBI nr
Match: RVW15011.1 (60S ribosomal protein L37a-2 [Vitis vinifera])

HSP 1 Score: 134 bits (338), Expect = 2.05e-39
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60
          MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE
Sbjct: 26 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 85

Query: 61 QTES 64
          QTES
Sbjct: 86 QTES 89

[Close]

BLAST of Chy6G108610 vs. TAIR 10
Match: AT3G10950.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 129.4 bits (324), Expect = 1.0e-30
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60
          MEVSQH+KYFCEFCGKY+VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLRE
Sbjct: 29 MEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLRE 88

Query: 61 QTES 65
          QTES
Sbjct: 89 QTES 92

[Close]

BLAST of Chy6G108610 vs. TAIR 10
Match: AT3G60245.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 127.9 bits (320), Expect = 3.0e-30
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 60
          MEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLRE
Sbjct: 29 MEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLRE 88

Query: 61 QTE 64
          Q E
Sbjct: 89 QIE 91

The following BLAST results are available for this feature:

BLAST of Chy6G108610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHE4	5.0e-30	98.44	60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=RPL37A PE=3 SV=1	[more]
P0DKK1	6.6e-30	95.31	60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g06...	[more]
P0DKK2	6.6e-30	95.31	60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g05...	[more]
Q9SRK6	1.5e-29	93.75	Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37AB...	[more]
Q8RXU5	4.3e-29	95.24	60S ribosomal protein L37a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37AC PE=3 SV=...	[more]

BLAST of Chy6G108610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1U7XSD1	2.2e-28	100.00	60S ribosomal protein L37a OS=Nicotiana sylvestris OX=4096 GN=LOC104239566 PE=3 ...	[more]
A0A6J1ICH2	2.2e-28	100.00	60S ribosomal protein L37a OS=Cucurbita maxima OX=3661 GN=LOC111471808 PE=3 SV=1	[more]
K4CND1	2.2e-28	100.00	Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101251802 PE=3 SV=1	[more]
A0A1U8LTA9	2.2e-28	100.00	60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=LOC107929672 PE=3 SV...	[more]
A0A1U8IV94	2.2e-28	100.00	60S ribosomal protein L37a isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107900...	[more]

BLAST of Chy6G108610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013410.1	1.01e-39	100.00	60S ribosomal protein L37a [Cucurbita argyrosperma subsp. argyrosperma] >KZV5794...	[more]
EYU42328.1	1.45e-39	100.00	hypothetical protein MIMGU_mgv1a0171311mg, partial [Erythranthe guttata]	[more]
XP_024987410.1	1.67e-39	100.00	60S ribosomal protein L37a-like, partial [Cynara cardunculus var. scolymus]	[more]
KAE9459940.1	1.77e-39	100.00	hypothetical protein C3L33_08144, partial [Rhododendron williamsianum]	[more]
RVW15011.1	2.05e-39	100.00	60S ribosomal protein L37a-2 [Vitis vinifera]	[more]

BLAST of Chy6G108610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10950.1	1.0e-30	93.75	Zinc-binding ribosomal protein family protein	[more]
AT3G60245.1	3.0e-30	95.24	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002674	Ribosomal protein L37ae	PFAM	PF01780	Ribosomal_L37ae	coord: 1..60 e-value: 1.7E-25 score: 88.9
IPR011331	Ribosomal protein L37ae/L37e	GENE3D	2.20.25.30		coord: 1..64 e-value: 2.6E-28 score: 99.9
None	No IPR available	PANTHER	PTHR48149:SF2	60S RIBOSOMAL PROTEIN L37A	coord: 1..64
None	No IPR available	PANTHER	PTHR48149	60S RIBOSOMAL PROTEIN L37A-2	coord: 1..64
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G108610.1	Chy6G108610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome