Chy6G106860 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G106860
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Zinc finger protein
Location	chrH06: 1029275 .. 1029841 (+)
RNA-Seq Expression	Chy6G106860
Synteny	Chy6G106860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCGCCGCATAATCCCCCTTCTCTTTGCCGTTCCACAAACAGAACCGGAACCGGAACCGGAATCCTCTCTCTCACCCACCGCCATGGGCTATCCCGTAGGCTACACCGACATGTTTTTCCCCAACGCCTTTCTCCATCTCCTCTTCTTCCTCGGTTACATTAGAAGCCTCATTGTTTCGCTCTTTCAATTTCTAGGGCTTTCCGATTTTCTCGAGTCCAACGTCGTTTGGCCCGAAAATCCGACCTCGATCTTCCACGATCGATCCGTACCCACCATCCTCATCGAGAAATTCGTCCCCGTCGTTAAGTTCACCGACATCGTCGCCGCCGTCGAGTTTCCACCGGAATGTTGCGCCGTTTGTCTTTGTGAGTTTCAGGACGATGATGAGGTTAGGTTTTTGAAAAACTGTAAACACATTTTTCATAAAGAATGTTTGGATCGATGGATGATTCGCGATCAGAGAAGCTGTCCTCTATGTAGAACCCTAATCGTGCCGGAGGAGTCGATCCCGCCACTAATGGATTTTTCCGACTGCACCGAGTTTTCCGGCGACTATAGCTAA

mRNA sequence

ATGAACCGCCGCATAATCCCCCTTCTCTTTGCCGTTCCACAAACAGAACCGGAACCGGAACCGGAATCCTCTCTCTCACCCACCGCCATGGGCTATCCCGTAGGCTACACCGACATGTTTTTCCCCAACGCCTTTCTCCATCTCCTCTTCTTCCTCGGTTACATTAGAAGCCTCATTGTTTCGCTCTTTCAATTTCTAGGGCTTTCCGATTTTCTCGAGTCCAACGTCGTTTGGCCCGAAAATCCGACCTCGATCTTCCACGATCGATCCGTACCCACCATCCTCATCGAGAAATTCGTCCCCGTCGTTAAGTTCACCGACATCGTCGCCGCCGTCGAGTTTCCACCGGAATGTTGCGCCGTTTGTCTTTGTGAGTTTCAGGACGATGATGAGGTTAGGTTTTTGAAAAACTGTAAACACATTTTTCATAAAGAATGTTTGGATCGATGGATGATTCGCGATCAGAGAAGCTGTCCTCTATGTAGAACCCTAATCGTGCCGGAGGAGTCGATCCCGCCACTAATGGATTTTTCCGACTGCACCGAGTTTTCCGGCGACTATAGCTAA

Coding sequence (CDS)

ATGAACCGCCGCATAATCCCCCTTCTCTTTGCCGTTCCACAAACAGAACCGGAACCGGAACCGGAATCCTCTCTCTCACCCACCGCCATGGGCTATCCCGTAGGCTACACCGACATGTTTTTCCCCAACGCCTTTCTCCATCTCCTCTTCTTCCTCGGTTACATTAGAAGCCTCATTGTTTCGCTCTTTCAATTTCTAGGGCTTTCCGATTTTCTCGAGTCCAACGTCGTTTGGCCCGAAAATCCGACCTCGATCTTCCACGATCGATCCGTACCCACCATCCTCATCGAGAAATTCGTCCCCGTCGTTAAGTTCACCGACATCGTCGCCGCCGTCGAGTTTCCACCGGAATGTTGCGCCGTTTGTCTTTGTGAGTTTCAGGACGATGATGAGGTTAGGTTTTTGAAAAACTGTAAACACATTTTTCATAAAGAATGTTTGGATCGATGGATGATTCGCGATCAGAGAAGCTGTCCTCTATGTAGAACCCTAATCGTGCCGGAGGAGTCGATCCCGCCACTAATGGATTTTTCCGACTGCACCGAGTTTTCCGGCGACTATAGCTAA

Protein sequence

MNRRIIPLLFAVPQTEPEPEPESSLSPTAMGYPVGYTDMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPENPTSIFHDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDCTEFSGDYS*

Homology

[Close]

BLAST of Chy6G106860 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.9e-38
Identity = 75/144 (52.08%), Postives = 104/144 (72.22%), Query Frame = 0


Query: 30  MGYPVGYTDMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPE---NPTSIF 89
           MG+PVGYT++F P  F+  L  LG+IR+++ S+F+FLGLSDFLE +  WP+    PT I 
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIP 60

Query: 90  HDRS-VPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKE 149
             RS    +LI + +PV+KF ++  + E  PE CAVCL EF+ + E+R+L+NC+HIFH+ 
Sbjct: 61  ETRSPFSALLIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRS 120

Query: 150 CLDRWMIRDQRSCPLCRTLIVPEE 170
           CLDRWM  DQ++CPLCRT  VP+E
Sbjct: 121 CLDRWMDHDQKTCPLCRTPFVPDE 144

[Close]

BLAST of Chy6G106860 vs. ExPASy Swiss-Prot
Match: Q9SUS5 (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.9e-22
Identity = 51/145 (35.17%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 30  MGYPVGYTDMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPENPTSIFHDR 89
           MG P  + ++  P   L  L+ +G+ R ++ +L  ++GL  FL+ N     +PT +    
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNETSRSDPTRL--AL 60

Query: 90  SVPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKECLDR 149
           S    L  + +PVV+F+D++     P +CC VCL +F  DD++R L  C H+FH  CLDR
Sbjct: 61  STSATLANELIPVVRFSDLLTD---PEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDR 120

Query: 150 WMIR-DQRSCPLCRTLIVPEESIPP 174
           W++  ++ +CP+CR   +PEE   P
Sbjct: 121 WIVDCNKITCPICRNRFLPEEKSTP 140

[Close]

BLAST of Chy6G106860 vs. ExPASy Swiss-Prot
Match: Q9SUS4 (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.2e-20
Identity = 51/142 (35.92%), Postives = 82/142 (57.75%), Query Frame = 0


Query: 30  MGYPVGY-TDMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPENPTSIFHD 89
           MG P  + T++  P+  L +L+ +G+ R ++ +L  ++GL  FL+ N      P    H 
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNET--SAPDLTRHA 60

Query: 90  RSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKECLD 149
            S    L  + +PVV+F+D+      P +CC VCL +F+ DD+VR L  C H+FH  CLD
Sbjct: 61  LSTSASLANELIPVVRFSDLPTD---PEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLD 120

Query: 150 RWMI-RDQRSCPLCRTLIVPEE 170
           RW++  ++  CP+CR   +P+E
Sbjct: 121 RWIVDYNKMKCPVCRHRFLPKE 137

[Close]

BLAST of Chy6G106860 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 5.6e-13
Identity = 50/170 (29.41%), Postives = 85/170 (50.00%), Query Frame = 0


Query: 23  SSLSPTAMGYPVGYTDMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPENP 82
           S +SP+ +   +  + +FF +  LHLL     +R L+    +     D+ ++        
Sbjct: 45  SKISPSILLIIIILSIIFFISGLLHLL-----VRFLLTPSSR--DREDYFDNVTALQGQL 104

Query: 83  TSIF--HDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKH 142
             +F  HD  V    I+  +PV  +  I+    +P + CAVCLCEF+ +D++R L  C H
Sbjct: 105 QQLFHLHDSGVDQSFIDT-LPVFHYKSIIGLKNYPFD-CAVCLCEFETEDKLRLLPKCSH 164

Query: 143 IFHKECLDRWMIRDQRSCPLCRTLIVPEESI--PPLMDFSDCTEFSGDYS 189
            FH +C+D W++    +CPLCR+ ++ + S    P   F    E + D+S
Sbjct: 165 AFHMDCIDTWLL-SHSTCPLCRSSLLSDLSSHQDPRSSFLLVLESASDHS 204

[Close]

BLAST of Chy6G106860 vs. ExPASy Swiss-Prot
Match: Q9FL07 (RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.2e-12
Identity = 59/187 (31.55%), Postives = 87/187 (46.52%), Query Frame = 0


Query: 13  PQTEPEPEPESSLSPTAMGYPVGYTDMFFPNAFLHLL--FFLGYIRSLIVS---LFQFLG 72
           P + P P   + +SP  +   V    +FF +  LHLL  F + +  +   S    F  + 
Sbjct: 29  PPSPPPPSSGNRISPAVLFVIVILAVLFFISGLLHLLVRFLIKHPSATASSRSNRFPEIS 88

Query: 73  LSDFLESNVVWPENPTSIFH--DRSVPTILIEKFVPVVKFTDIVAA--------VEFPPE 132
            SD L+  +        +FH  D  +    I+  +PV  + +IV +            P 
Sbjct: 89  TSDALQRQL------QQLFHLNDSGLDQAFIDA-LPVFHYKEIVGSAGGGGGNGAAQEPF 148

Query: 133 CCAVCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCR-TLIVPEESIP-PLM 183
            CAVCLCEF + D++R L  C H FH  C+D W ++   +CPLCR TL  P  S+  P+ 
Sbjct: 149 DCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTW-LQSNSTCPLCRGTLFSPGFSMENPMF 207

[Close]

BLAST of Chy6G106860 vs. ExPASy TrEMBL
Match: A0A0A0L3J4 (Zinc finger protein OS=Cucumis sativus OX=3659 GN=Csa_3G121750 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.3e-100
Identity = 182/188 (96.81%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 1   MNRRIIPLLFAVPQTEPEPEPESSLSPTAMGYPVGYTDMFFPNAFLHLLFFLGYIRSLIV 60
           MNRRIIPLLFAVPQT  EPEPESSLSPTAMGYP+GY DMFFPNAFLHLLFFLGYIRSLIV
Sbjct: 1   MNRRIIPLLFAVPQT--EPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIV 60

Query: 61  SLFQFLGLSDFLESNVVWPENPTSIFHDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCA 120
           SLFQFLGLSDFLESNVVWPENPTSIF+DRSVPTILIEKFVPVVKFTDIVAAVEFPPECCA
Sbjct: 61  SLFQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCA 120

Query: 121 VCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDC 180
           VCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDC
Sbjct: 121 VCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDC 180

Query: 181 TEFSGDYS 189
           TEFSG YS
Sbjct: 181 TEFSGYYS 186

[Close]

BLAST of Chy6G106860 vs. ExPASy TrEMBL
Match: A0A5A7U3X1 (Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001770 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.0e-98
Identity = 177/188 (94.15%), Postives = 181/188 (96.28%), Query Frame = 0


Query: 1   MNRRIIPLLFAVPQTEPEPEPESSLSPTAMGYPVGYTDMFFPNAFLHLLFFLGYIRSLIV 60
           MNRRIIP LFAVPQTEPEPEP  SLSPTAMGYPVGY D+FFPNAFLHLLFFLGYIRSLIV
Sbjct: 1   MNRRIIPFLFAVPQTEPEPEP--SLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSLIV 60

Query: 61  SLFQFLGLSDFLESNVVWPENPTSIFHDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCA 120
           SLFQFLGLSDFLESNVVWPENPTSIFHDRSV TILIE+FVPVVKFTDI+AAVEFPPECCA
Sbjct: 61  SLFQFLGLSDFLESNVVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAVEFPPECCA 120

Query: 121 VCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDC 180
           VCLCEF DD+EVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFS C
Sbjct: 121 VCLCEFHDDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSGC 180

Query: 181 TEFSGDYS 189
           TEFSGDYS
Sbjct: 181 TEFSGDYS 186

[Close]

BLAST of Chy6G106860 vs. ExPASy TrEMBL
Match: A0A5D3D061 (Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004810 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 2.6e-98
Identity = 176/188 (93.62%), Postives = 181/188 (96.28%), Query Frame = 0


Query: 1   MNRRIIPLLFAVPQTEPEPEPESSLSPTAMGYPVGYTDMFFPNAFLHLLFFLGYIRSLIV 60
           MNRRIIP LFAVPQTEPEPEP  SLSPTAMGYPVGY D+FFPNAFLHLLFFLGYIRSLIV
Sbjct: 1   MNRRIIPFLFAVPQTEPEPEP--SLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSLIV 60

Query: 61  SLFQFLGLSDFLESNVVWPENPTSIFHDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCA 120
           SLFQFLGLSDFLESNVVWPENPTSIFHDRSV TILIE+FVPVVKFTDI+AAVEFPPECCA
Sbjct: 61  SLFQFLGLSDFLESNVVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAVEFPPECCA 120

Query: 121 VCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDC 180
           VCLCEF DD+EVRFLKNCKH+FHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFS C
Sbjct: 121 VCLCEFHDDEEVRFLKNCKHVFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSGC 180

Query: 181 TEFSGDYS 189
           TEFSGDYS
Sbjct: 181 TEFSGDYS 186

[Close]

BLAST of Chy6G106860 vs. ExPASy TrEMBL
Match: A0A6J1D2I3 (E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC111016398 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.8e-68
Identity = 133/175 (76.00%), Postives = 148/175 (84.57%), Query Frame = 0


Query: 17  PEPEPESSLSPTAMGYPVGYTDMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNV 76
           P  EP S +SP AMGYPVGY  +FFPNAFLHLLFFLGY+RSLIVSLF+FLGLSDFLE+ V
Sbjct: 7   PNREP-SVISPIAMGYPVGYGHVFFPNAFLHLLFFLGYLRSLIVSLFRFLGLSDFLETGV 66

Query: 77  VWPENPTSIFHDRS-VPTILIEKFVPVVKFTDIVAAVEF--PPECCAVCLCEFQDDDEVR 136
           VWPE+ TSIFHDRS V  ILIE+FVPVVKF+DI   V    P E CAVCLCEF+D++EVR
Sbjct: 67  VWPESQTSIFHDRSVVSAILIEEFVPVVKFSDIATNVGIGSPTESCAVCLCEFEDEEEVR 126

Query: 137 FLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDCTEFSGDYS 189
            LKNCKHIFHKECLDRWMIRDQRSCPLCRTL++P+E IP L DFS C+E SGDYS
Sbjct: 127 CLKNCKHIFHKECLDRWMIRDQRSCPLCRTLVLPDEFIPQLPDFSGCSELSGDYS 180

[Close]

BLAST of Chy6G106860 vs. ExPASy TrEMBL
Match: A0A6J1E8G9 (E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita moschata OX=3662 GN=LOC111431816 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.4e-67
Identity = 125/161 (77.64%), Postives = 139/161 (86.34%), Query Frame = 0


Query: 30  MGYPVGYTDMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPENPTSIFHDR 89
           MGYPVGY D+FF NAFLHLL FLGYIRSLI+SL++ LGL DFLES+VVWP+NPT I  D 
Sbjct: 1   MGYPVGYADVFFSNAFLHLLVFLGYIRSLIISLYRILGLPDFLESSVVWPQNPTPIIDDH 60

Query: 90  SVPTILIEKFVPVVKFTDI--VAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKECL 149
           SV  I IE+F P+VKF+DI   A   FPPECCAVCLCEFQDD+EVRFLKNCKHIFHKECL
Sbjct: 61  SVLPIRIEEFFPMVKFSDIFDAAGAGFPPECCAVCLCEFQDDEEVRFLKNCKHIFHKECL 120

Query: 150 DRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDCTEFSGDYS 189
           D WMIRDQRSCPLCRTLIVPEES+P L+DF+ C+EFSGDYS
Sbjct: 121 DGWMIRDQRSCPLCRTLIVPEESMPALVDFAGCSEFSGDYS 161

[Close]

BLAST of Chy6G106860 vs. NCBI nr
Match: KGN56500.1 (hypothetical protein Csa_010889 [Cucumis sativus])

HSP 1 Score: 369 bits (948), Expect = 7.93e-129
Identity = 182/188 (96.81%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 1   MNRRIIPLLFAVPQTEPEPEPESSLSPTAMGYPVGYTDMFFPNAFLHLLFFLGYIRSLIV 60
           MNRRIIPLLFAVPQTEPEPE  SSLSPTAMGYP+GY DMFFPNAFLHLLFFLGYIRSLIV
Sbjct: 1   MNRRIIPLLFAVPQTEPEPE--SSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIV 60

Query: 61  SLFQFLGLSDFLESNVVWPENPTSIFHDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCA 120
           SLFQFLGLSDFLESNVVWPENPTSIF+DRSVPTILIEKFVPVVKFTDIVAAVEFPPECCA
Sbjct: 61  SLFQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCA 120

Query: 121 VCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDC 180
           VCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDC
Sbjct: 121 VCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDC 180

Query: 181 TEFSGDYS 188
           TEFSG YS
Sbjct: 181 TEFSGYYS 186

[Close]

BLAST of Chy6G106860 vs. NCBI nr
Match: KAA0048956.1 (Zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 362 bits (929), Expect = 6.26e-126
Identity = 177/188 (94.15%), Postives = 181/188 (96.28%), Query Frame = 0


Query: 1   MNRRIIPLLFAVPQTEPEPEPESSLSPTAMGYPVGYTDMFFPNAFLHLLFFLGYIRSLIV 60
           MNRRIIP LFAVPQTEPEPEP  SLSPTAMGYPVGY D+FFPNAFLHLLFFLGYIRSLIV
Sbjct: 1   MNRRIIPFLFAVPQTEPEPEP--SLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSLIV 60

Query: 61  SLFQFLGLSDFLESNVVWPENPTSIFHDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCA 120
           SLFQFLGLSDFLESNVVWPENPTSIFHDRSV TILIE+FVPVVKFTDI+AAVEFPPECCA
Sbjct: 61  SLFQFLGLSDFLESNVVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAVEFPPECCA 120

Query: 121 VCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDC 180
           VCLCEF DD+EVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFS C
Sbjct: 121 VCLCEFHDDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSGC 180

Query: 181 TEFSGDYS 188
           TEFSGDYS
Sbjct: 181 TEFSGDYS 186

[Close]

BLAST of Chy6G106860 vs. NCBI nr
Match: TYK17611.1 (Zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 362 bits (928), Expect = 8.89e-126
Identity = 176/188 (93.62%), Postives = 181/188 (96.28%), Query Frame = 0


Query: 1   MNRRIIPLLFAVPQTEPEPEPESSLSPTAMGYPVGYTDMFFPNAFLHLLFFLGYIRSLIV 60
           MNRRIIP LFAVPQTEPEPEP  SLSPTAMGYPVGY D+FFPNAFLHLLFFLGYIRSLIV
Sbjct: 1   MNRRIIPFLFAVPQTEPEPEP--SLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSLIV 60

Query: 61  SLFQFLGLSDFLESNVVWPENPTSIFHDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCA 120
           SLFQFLGLSDFLESNVVWPENPTSIFHDRSV TILIE+FVPVVKFTDI+AAVEFPPECCA
Sbjct: 61  SLFQFLGLSDFLESNVVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAVEFPPECCA 120

Query: 121 VCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDC 180
           VCLCEF DD+EVRFLKNCKH+FHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFS C
Sbjct: 121 VCLCEFHDDEEVRFLKNCKHVFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSGC 180

Query: 181 TEFSGDYS 188
           TEFSGDYS
Sbjct: 181 TEFSGDYS 186

[Close]

BLAST of Chy6G106860 vs. NCBI nr
Match: XP_023526936.1 (E3 ubiquitin-protein ligase RHA1B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 303 bits (776), Expect = 1.41e-102
Identity = 151/190 (79.47%), Postives = 163/190 (85.79%), Query Frame = 0


Query: 1   MNRRIIPLLFAVPQTEPEPEPESSLSPTAMGYPVGYTDMFFPNAFLHLLFFLGYIRSLIV 60
           MNRR+IP LFAVPQTEPE E  SSLSPTAMGYPVGY D+FF NAFLHLL  LGYIRSLI+
Sbjct: 1   MNRRVIPFLFAVPQTEPESE--SSLSPTAMGYPVGYADVFFSNAFLHLLVLLGYIRSLII 60

Query: 61  SLFQFLGLSDFLESNVVWPENPTSIFHDRSVPTILIEKFVPVVKFTDI--VAAVEFPPEC 120
           SLF+ LGL DFLESNVVWP+NPT I  D SV  I IE+F PVVKF+DI   A   FPPEC
Sbjct: 61  SLFRILGLPDFLESNVVWPQNPTPIIDDHSVLPIRIEEFFPVVKFSDIFDAAGAGFPPEC 120

Query: 121 CAVCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFS 180
           CAVCLCEF+DD+EVRFLKNCKHIFHKECLD WMIRDQRSCPLCRTLIVPE SIPPL+DF+
Sbjct: 121 CAVCLCEFEDDEEVRFLKNCKHIFHKECLDGWMIRDQRSCPLCRTLIVPEGSIPPLVDFA 180

Query: 181 DCTEFSGDYS 188
            C+EFSGDYS
Sbjct: 181 GCSEFSGDYS 188

[Close]

BLAST of Chy6G106860 vs. NCBI nr
Match: KAG6582623.1 (Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 303 bits (776), Expect = 1.41e-102
Identity = 150/190 (78.95%), Postives = 164/190 (86.32%), Query Frame = 0


Query: 1   MNRRIIPLLFAVPQTEPEPEPESSLSPTAMGYPVGYTDMFFPNAFLHLLFFLGYIRSLIV 60
           MNRR+IP LFAVPQT+PE E  SSLSPTAMGYPVGY D+FF NAFLHLL FLGYIRSLI+
Sbjct: 1   MNRRVIPFLFAVPQTQPESE--SSLSPTAMGYPVGYADVFFSNAFLHLLVFLGYIRSLII 60

Query: 61  SLFQFLGLSDFLESNVVWPENPTSIFHDRSVPTILIEKFVPVVKFTDI--VAAVEFPPEC 120
           SL++ LGL DFLES+VVWP+NPT I  D SV  I IE+F P+VKF+DI   A   FPPEC
Sbjct: 61  SLYRILGLPDFLESSVVWPQNPTPIIDDHSVLPIRIEEFFPMVKFSDIFDAAGAGFPPEC 120

Query: 121 CAVCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFS 180
           CAVCLCEFQDD+EVRFLKNCKHIFHKECLD WMIRDQRSCPLCRTLIVPEESIPPL+DF 
Sbjct: 121 CAVCLCEFQDDEEVRFLKNCKHIFHKECLDGWMIRDQRSCPLCRTLIVPEESIPPLVDFP 180

Query: 181 DCTEFSGDYS 188
            C+EFSGDYS
Sbjct: 181 GCSEFSGDYS 188

[Close]

BLAST of Chy6G106860 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-39
Identity = 75/144 (52.08%), Postives = 104/144 (72.22%), Query Frame = 0


Query: 30  MGYPVGYTDMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPE---NPTSIF 89
           MG+PVGYT++F P  F+  L  LG+IR+++ S+F+FLGLSDFLE +  WP+    PT I 
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIP 60

Query: 90  HDRS-VPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKE 149
             RS    +LI + +PV+KF ++  + E  PE CAVCL EF+ + E+R+L+NC+HIFH+ 
Sbjct: 61  ETRSPFSALLIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRS 120

Query: 150 CLDRWMIRDQRSCPLCRTLIVPEE 170
           CLDRWM  DQ++CPLCRT  VP+E
Sbjct: 121 CLDRWMDHDQKTCPLCRTPFVPDE 144

[Close]

BLAST of Chy6G106860 vs. TAIR 10
Match: AT1G63840.1 (RING/U-box superfamily protein )

HSP 1 Score: 138.3 bits (347), Expect = 6.5e-33
Identity = 70/143 (48.95%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 30  MGYPVGYTDMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVV---WPENPTSIF 89
           MG+PVGY+++  P  F +LL FLG IR LI ++F+ +GL DFLE   V   WP+ P ++ 
Sbjct: 1   MGFPVGYSELLLPKIFFYLLSFLGLIRKLISTMFKIIGLPDFLEPEPVSTSWPDPPPTLT 60

Query: 90  HDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKEC 149
              S   IL  + +PVV+F+DI        ECCAVCL +F++DDE+R L NC+HIFH+ C
Sbjct: 61  KPDSA-AILAGEMLPVVRFSDINRP---ESECCAVCLYDFENDDEIRRLTNCRHIFHRGC 120

Query: 150 LDRWMI-RDQRSCPLCRTLIVPE 169
           LDRWM+  +Q +CPLCRT  +P+
Sbjct: 121 LDRWMMGYNQMTCPLCRTQFIPD 139

[Close]

BLAST of Chy6G106860 vs. TAIR 10
Match: AT5G41400.1 (RING/U-box superfamily protein )

HSP 1 Score: 131.7 bits (330), Expect = 6.1e-31
Identity = 73/156 (46.79%), Postives = 99/156 (63.46%), Query Frame = 0


Query: 30  MGYPVGYTDMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVV-----WPENP-- 89
           MGYPVGYT++  P  FLHLL  LG IR+LI + F+ LGL DFLES+ V     W E P  
Sbjct: 1   MGYPVGYTELLLPRIFLHLLSLLGLIRTLIDTGFRILGLPDFLESDPVSSSSSWLEPPYM 60

Query: 90  -TSIFHDRS------VPTILIEKFVPVVKFTDIV-AAVEFPPECCAVCLCEFQDDDEVRF 149
            T+  H +       V   L  + +PV++F+++         +CCAVCL EF++DDE+R 
Sbjct: 61  STAAHHHQESSFFFPVAARLAGEILPVIRFSELTRPGFGSGSDCCAVCLHEFENDDEIRR 120

Query: 150 LKNCKHIFHKECLDRWMI-RDQRSCPLCRTLIVPEE 170
           L NC+HIFH+ CLDRWM+  +Q +CPLCRT  + +E
Sbjct: 121 LTNCQHIFHRSCLDRWMMGYNQMTCPLCRTPFISDE 156

[Close]

BLAST of Chy6G106860 vs. TAIR 10
Match: AT4G11360.1 (RING-H2 finger A1B )

HSP 1 Score: 106.3 bits (264), Expect = 2.7e-23
Identity = 51/145 (35.17%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 30  MGYPVGYTDMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPENPTSIFHDR 89
           MG P  + ++  P   L  L+ +G+ R ++ +L  ++GL  FL+ N     +PT +    
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNETSRSDPTRL--AL 60

Query: 90  SVPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKECLDR 149
           S    L  + +PVV+F+D++     P +CC VCL +F  DD++R L  C H+FH  CLDR
Sbjct: 61  STSATLANELIPVVRFSDLLTD---PEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDR 120

Query: 150 WMIR-DQRSCPLCRTLIVPEESIPP 174
           W++  ++ +CP+CR   +PEE   P
Sbjct: 121 WIVDCNKITCPICRNRFLPEEKSTP 140

[Close]

BLAST of Chy6G106860 vs. TAIR 10
Match: AT4G11370.1 (RING-H2 finger A1A )

HSP 1 Score: 99.0 bits (245), Expect = 4.4e-21
Identity = 51/142 (35.92%), Postives = 82/142 (57.75%), Query Frame = 0


Query: 30  MGYPVGY-TDMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPENPTSIFHD 89
           MG P  + T++  P+  L +L+ +G+ R ++ +L  ++GL  FL+ N      P    H 
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNET--SAPDLTRHA 60

Query: 90  RSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKECLD 149
            S    L  + +PVV+F+D+      P +CC VCL +F+ DD+VR L  C H+FH  CLD
Sbjct: 61  LSTSASLANELIPVVRFSDLPTD---PEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLD 120

Query: 150 RWMI-RDQRSCPLCRTLIVPEE 170
           RW++  ++  CP+CR   +P+E
Sbjct: 121 RWIVDYNKMKCPVCRHRFLPKE 137

The following BLAST results are available for this feature:

BLAST of Chy6G106860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XF92	2.9e-38	52.08	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q9SUS5	3.9e-22	35.17	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 ...	[more]
Q9SUS4	6.2e-20	35.92	Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q940Q4	5.6e-13	29.41	RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2	[more]
Q9FL07	6.2e-12	31.55	RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1	[more]

BLAST of Chy6G106860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3J4	1.3e-100	96.81	Zinc finger protein OS=Cucumis sativus OX=3659 GN=Csa_3G121750 PE=4 SV=1	[more]
A0A5A7U3X1	2.0e-98	94.15	Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G...	[more]
A0A5D3D061	2.6e-98	93.62	Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G...	[more]
A0A6J1D2I3	4.8e-68	76.00	E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1E8G9	2.4e-67	77.64	E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of Chy6G106860 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56500.1	7.93e-129	96.81	hypothetical protein Csa_010889 [Cucumis sativus]	[more]
KAA0048956.1	6.26e-126	94.15	Zinc finger protein [Cucumis melo var. makuwa]	[more]
TYK17611.1	8.89e-126	93.62	Zinc finger protein [Cucumis melo var. makuwa]	[more]
XP_023526936.1	1.41e-102	79.47	E3 ubiquitin-protein ligase RHA1B-like [Cucurbita pepo subsp. pepo]	[more]
KAG6582623.1	1.41e-102	78.95	Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Chy6G106860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61460.1	2.1e-39	52.08	brassinosteroid-responsive RING-H2	[more]
AT1G63840.1	6.5e-33	48.95	RING/U-box superfamily protein	[more]
AT5G41400.1	6.1e-31	46.79	RING/U-box superfamily protein	[more]
AT4G11360.1	2.7e-23	35.17	RING-H2 finger A1B	[more]
AT4G11370.1	4.4e-21	35.92	RING-H2 finger A1A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 119..161 e-value: 2.9E-6 score: 36.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 119..162 e-value: 1.3E-11 score: 44.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 119..162 score: 12.69582
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 100..168 e-value: 1.1E-16 score: 61.8
None	No IPR available	PANTHER	PTHR45969:SF10	BRH1 RING FINGER PROTEIN	coord: 30..169
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 30..169
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 103..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G106860.1	Chy6G106860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0061630	ubiquitin protein ligase activity