Chy6G106730 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G106730
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	AB hydrolase-1 domain-containing protein
Location	chrH06: 927133 .. 928094 (-)
RNA-Seq Expression	Chy6G106730
Synteny	Chy6G106730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATTAATCGACAATGGATTCTTTGGAAGATACCCAGAAATGGCACTCACTCAAATTCGGTTAAGGTAAAGCTTTCTTGTTAAATTCCAATACTTTTCTTTGGGGGCATTTTGTCGAACACCTCATGGAAGTGCAAAATTTCTGTAGTAGCTTCTGATTTTTCCTTTATGGTCTTGATTTGTTTCGTTTTGTTTCTTGGAATAGCTCTGTTGTTTGTCGAGTTTATTAGGTGGTTGTATCCTTCAAATAGCTCTACCTGTTTGTGGTTAAATTTTGCCGGCGTACTGAATTTTAGCTTGGAACAGAATTCGTCAGCCATCACTATTGGAAGTTTTCGATACAATTTCACTCATATGAACTTCTCAATCTGTGAGTTTTAGTATTAGAGCTTTGAGGCGTAAATGTATGGCTTTTACACCCAATTTTTTTCCCCGATAATCAAATGCCTAACTTTTGTTGAGAATAAATGAAAAAGTAGGAAGAGGAACACAAAAAACGTAACTCCAGACAAAAGGAGTCAAAAACTAAAATCGAAAGTGCTTTTACAAATCGAAAGAACAGTATTATCAATTCCTTTGACTCCGTCGTCCATGTCGCAATTTCAAAGTAGAGAGGATATAGCCCACGCCTGATTTTGCACCTTGGACCATTTTGGGTCAGGTATTTACTTCACTTTTTCTTTTTGTCGTTTAAGATTTTGGAATCATCATGTGTTGAACTTGCACGAAGCAATTAGCAGGTGTTTTGGCTTTGTGATTCCTGAGAGTGGCTTTGCTTTATAAACGTTAATCGCATTTGTTGTCTGTTGTCTGTAGTAAGTGCATCACTATGTTGGTTTTTGTTCAGTTACGTATTTGAGTTTTGCTCTACAAGGATTGGAACAAGTCCTCATAACAGGAGGAATCCCTCCAATTGGGAATGGATGCACGTCAGATTCTGTATACAGAGCATGGCTTTGA

mRNA sequence

ATGTTATTAATCGACAATGGATTCTTTGGAAGATACCCAGAAATGGCACTCACTCAAATTCGGTTAAGGTGGTTGTATCCTTCAAATAGCTCTACCTGTTTGTGGTTAAATTTTGCCGGCGTACTGAATTTTAGCTTGGAACAGAATTCGTCAGCCATCACTATTGGAAGTTTTCGATACAATTTCACTCATATGAACTTCTCAATCTTTACGTATTTGAGTTTTGCTCTACAAGGATTGGAACAAGTCCTCATAACAGGAGGAATCCCTCCAATTGGGAATGGATGCACGTCAGATTCTGTATACAGAGCATGGCTTTGA

Coding sequence (CDS)

ATGTTATTAATCGACAATGGATTCTTTGGAAGATACCCAGAAATGGCACTCACTCAAATTCGGTTAAGGTGGTTGTATCCTTCAAATAGCTCTACCTGTTTGTGGTTAAATTTTGCCGGCGTACTGAATTTTAGCTTGGAACAGAATTCGTCAGCCATCACTATTGGAAGTTTTCGATACAATTTCACTCATATGAACTTCTCAATCTTTACGTATTTGAGTTTTGCTCTACAAGGATTGGAACAAGTCCTCATAACAGGAGGAATCCCTCCAATTGGGAATGGATGCACGTCAGATTCTGTATACAGAGCATGGCTTTGA

Protein sequence

MLLIDNGFFGRYPEMALTQIRLRWLYPSNSSTCLWLNFAGVLNFSLEQNSSAITIGSFRYNFTHMNFSIFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAWL*

Homology

[Close]

BLAST of Chy6G106730 vs. ExPASy TrEMBL
Match: A0A0A0L8R9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G121570 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.0e-35
Identity = 79/87 (90.80%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 22  LRWLYPSNSSTCLWLNFA-GVLNFSLEQNSSAITIGSFRYNFTHMNFSIFTYLSFALQGL 81
           + WLYPSNSSTCLW  FA GVL FSLEQNSSAITIGSFRYNFTHMNFS FTYLSFALQGL
Sbjct: 20  ITWLYPSNSSTCLWRKFAGGVLKFSLEQNSSAITIGSFRYNFTHMNFSTFTYLSFALQGL 79

Query: 82  EQVLITGGIPPIGNGCTSDSVYR-AWL 107
           EQVLITGGIPPIGNGCTSDSVYR AWL
Sbjct: 80  EQVLITGGIPPIGNGCTSDSVYRAAWL 106

[Close]

BLAST of Chy6G106730 vs. ExPASy TrEMBL
Match: A0A5D3D129 (Proline iminopeptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004980 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.2e-09
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 72  YLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAWL 107
           YLSFALQGLEQVLITGG PPIGNG T+DSVYRAWL
Sbjct: 33  YLSFALQGLEQVLITGGTPPIGNGWTADSVYRAWL 67

[Close]

BLAST of Chy6G106730 vs. ExPASy TrEMBL
Match: A0A5A7U5R8 (Proline iminopeptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001610 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.2e-09
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 72  YLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAWL 107
           YLSFALQGLEQVLITGG PPIGNG T+DSVYRAWL
Sbjct: 33  YLSFALQGLEQVLITGGTPPIGNGWTADSVYRAWL 67

[Close]

BLAST of Chy6G106730 vs. ExPASy TrEMBL
Match: A0A5A7U143 (Proline iminopeptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001580 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.4e-09
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 67  FSIFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRA 105
           F   TYLSFA QGL+QVLITGGIPPIGNGCT+DSVYRA
Sbjct: 167 FCAVTYLSFAPQGLKQVLITGGIPPIGNGCTADSVYRA 204

[Close]

BLAST of Chy6G106730 vs. ExPASy TrEMBL
Match: A0A5D3D1Y5 (Proline iminopeptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G005010 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.4e-09
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 67  FSIFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRA 105
           F   TYLSFA QGL+QVLITGGIPPIGNGCT+DSVYRA
Sbjct: 213 FCAVTYLSFAPQGLKQVLITGGIPPIGNGCTADSVYRA 250

[Close]

BLAST of Chy6G106730 vs. NCBI nr
Match: KGN56481.1 (hypothetical protein Csa_011588 [Cucumis sativus])

HSP 1 Score: 160 bits (405), Expect = 1.18e-48
Identity = 82/101 (81.19%), Postives = 86/101 (85.15%), Query Frame = 0


Query: 9   FGRYPEMALTQIR-LRWLYPSNSSTCLWLNFAG-VLNFSLEQNSSAITIGSFRYNFTHMN 68
           F  +  +AL  +  + WLYPSNSSTCLW  FAG VL FSLEQNSSAITIGSFRYNFTHMN
Sbjct: 6   FVSFLGVALLFVEFITWLYPSNSSTCLWRKFAGGVLKFSLEQNSSAITIGSFRYNFTHMN 65

Query: 69  FSIFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRA-WL 106
           FS FTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRA WL
Sbjct: 66  FSTFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAAWL 106

[Close]

BLAST of Chy6G106730 vs. NCBI nr
Match: TYK17627.1 (proline iminopeptidase [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.93e-14
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 72  YLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAWL 106
           YLSFALQGLEQVLITGG PPIGNG T+DSVYRAWL
Sbjct: 33  YLSFALQGLEQVLITGGTPPIGNGWTADSVYRAWL 67

[Close]

BLAST of Chy6G106730 vs. NCBI nr
Match: KAA0048941.1 (proline iminopeptidase [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.93e-14
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 72  YLSFALQGLEQVLITGGIPPIGNGCTSDSVYRAWL 106
           YLSFALQGLEQVLITGG PPIGNG T+DSVYRAWL
Sbjct: 33  YLSFALQGLEQVLITGGTPPIGNGWTADSVYRAWL 67

[Close]

BLAST of Chy6G106730 vs. NCBI nr
Match: KAA0048938.1 (proline iminopeptidase [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 2.51e-11
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 67  FSIFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRA 104
           F   TYLSFA QGL+QVLITGGIPPIGNGCT+DSVYRA
Sbjct: 167 FCAVTYLSFAPQGLKQVLITGGIPPIGNGCTADSVYRA 204

[Close]

BLAST of Chy6G106730 vs. NCBI nr
Match: XP_022933365.1 (uncharacterized protein LOC111440690 [Cucurbita moschata])

HSP 1 Score: 70.1 bits (170), Expect = 2.55e-11
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 67  FSIFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRA 104
           F   TYLSFA QGL+QVLITGGIPPIGNGCT+DSVYRA
Sbjct: 203 FCAVTYLSFAPQGLKQVLITGGIPPIGNGCTADSVYRA 240

[Close]

BLAST of Chy6G106730 vs. TAIR 10
Match: AT3G61540.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 7.5e-10
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 67  FSIFTYLSFALQGLEQVLITGGIPPIGNGCTSDSVYRA 105
           F   TYLSFA +GL+QVLITGGIPPIG  CT+D VY A
Sbjct: 218 FCALTYLSFAPEGLKQVLITGGIPPIGKACTADDVYEA 255

The following BLAST results are available for this feature:

BLAST of Chy6G106730 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G106730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8R9	1.0e-35	90.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G121570 PE=4 SV=1	[more]
A0A5D3D129	2.2e-09	91.43	Proline iminopeptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
A0A5A7U5R8	2.2e-09	91.43	Proline iminopeptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1...	[more]
A0A5A7U143	8.4e-09	84.21	Proline iminopeptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1...	[more]
A0A5D3D1Y5	8.4e-09	84.21	Proline iminopeptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]

BLAST of Chy6G106730 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56481.1	1.18e-48	81.19	hypothetical protein Csa_011588 [Cucumis sativus]	[more]
TYK17627.1	3.93e-14	91.43	proline iminopeptidase [Cucumis melo var. makuwa]	[more]
KAA0048941.1	3.93e-14	91.43	proline iminopeptidase [Cucumis melo var. makuwa]	[more]
KAA0048938.1	2.51e-11	84.21	proline iminopeptidase [Cucumis melo var. makuwa]	[more]
XP_022933365.1	2.55e-11	84.21	uncharacterized protein LOC111440690 [Cucurbita moschata]	[more]

BLAST of Chy6G106730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61540.1	7.5e-10	71.05	alpha/beta-Hydrolases superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G106730.1	Chy6G106730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008233	peptidase activity