Chy6G105860 (gene) Cucumber (hystrix) v1

Overview
NameChy6G105860
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH06: 411418 .. 414284 (-)
RNA-Seq ExpressionChy6G105860
SyntenyChy6G105860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAAACACCTCAGTTTTCCAATAAACGAGGCCCAGAATCGAATAGTAACAGACAAAGCGAGAAACGAATGGAGATTCCAAAAATCTAACATCCTATTGAAGAACACGAACCTAAATGGGAGTGGTACGAGACCTAAACACAAATAAGCAGGATAAATCTCGCCAACATGCGCATTGGGAGGCAGCTAAAGAAACCCAAAACCATTAAAAAAAACACACACACATCACTATAAGCAATTCGATCAATAGCACATCTAGACACCTTAAGGGACTGAAAAATTACGAACCCAGGTAATGAAATAGGGAAAAAAAGGCGAAAGAAGTCACGGTGGGAGCCTTAAAAGCCATACCAGTGAAGTGAGGGATTCGGAAGGTACGAGAATTGGAATCTTAGTTGTGAGCGAATCCTTTGTGTTTCTGTATCTGGGTTGATTTCCTTTGGTTCGCTTGGGAACCTCAGAGAGAAGGGGAGAATCAGAAGTGCGTTAGATATCTTAGAATGAGTTTTTCGATTCGGGCCTTGGTGTGCAGAAGACGAGCGTCTCTGGGCTGAAACGACGAGGGCTTGAAGGCGGATGGGCTAAATTGGAAGCCGAATCTTCTATCTACTTAAACGTCGTCGTCTTCTTCCCCCGCGAATATTTTATCTCTTCTCCGTTGCCGGGTTTGTGCTGCGAAATGTCTAAAAAGCCCTTTTTATACCAAAAATATCTCTTCTCCAATTTCCAAATGCATGAAAATAAATATATATTTTTTCTAGGGTTTTTAAAGAAAACTCATGCTTTTCTTTTTCCTTTTCAATTTCTCTTGAACTTGTCCCAATTATTAATAATTAATTTGTGGTTTTCAAATTGAATTAAAATTAATTTTGGTGAAGCGTAGAAAATGCATCTAACCTTCAAGTGACGCTAATCGAACTTAGATACGTAAGTTTGTAACGGAAAAATTAGAATAAATAAGAAATAAAAGTACTAAAACTTGTATTTATAGGAATTTTGAGTGTAGATTTATCTTAATCCCACTAGCATTAAGATTTGAATTTTCAAATCTCTTTTATTATTATAGGAGACATTTTTTAAAATAGCAAAATAAATTAAAATATTTACAAGTTATAGCAAAAATTTTGGATTCTATCGGTGTTACCACTCTTGCATATCAATGACTATTATGGATGAAATTTGCTATAAGTTGTAAATATTTTGTAAAATTTGTTATTTTTGAAAATTTTCTTCTTATTATTATTATTTTATATATATATATATATATATATTTCTTTATCCTACTAAGCCAAAACATAATTACGAACGAAAACTTGACTCAATTGATAAGTATTAGAGATCACATTTCATGGTTCAAATCTTCTTCTTCTTTTTTTTTTTTTTTCCATAAAGGTATTAAATTTATAGTTTTGATGAAAACTAATACATTGTTACAAATACAAAGAACATGGTCTAAAATACCTATTTTAAAGGTCCAAAATGTCAGATGCCTCTTTGATAATATTATTGTGTTAAATTATATCATTACTCTAAATATTTATTTATTTAGTGTTTTTTTACATCTTCCTCCTAAGTCTGTAAATTTTTTTTTATCTCCCACGAACTTCTTCTTCGTTGTTTGGCATACTTTTTCTCATCTCCCACGATCTTTCTCTTCATCATGTAGCATACACACGTTTTTTTTTCTCATCTCCCACCCATCTTCTCCTTATCGGACATCTTTTTCTTTAGTACGTAATCTTCTTTTTTGTCTTGATCTTCAACATCGTGCAATACCAATTGAAAATGAGTGAGAATGAATGACACCAACGAGATAGAAGAGAGCGACACCAAACTTGCAAGACTAAACTACTTTTTTCGTATGTGCGCAAGTGCATTTTGATTATTATATTCGAATTTAACATCAACGAAGAGTTATTGAAATTTAAAAAAATAATAATAATAACAACGGTTCATTCCACATCAAAGGGTCAAAAAAACATATTTTACTTTCCGAAAGGGGTTTTTTGTACAAAGTTTTTGCTGGGGCTAATTTTGCAAATTTTATCGTCTTCTTCTGCAAACAAAGGCCCGACTCGAAAAGAACGCACTATGTGATGTTTAACGCAGCTCTGATTCTCCATTTTATCTGAAGGTCGCAAGGGCAAAAGGAACCAATGTTTAACGCAGCCCACACTAGATCATGCATTTGGAAATTGGAGGGGCGCTTCGTCTTCTGCACACAAAGGCCCGAATCGAAAAACTCATTCTAAGATATCTAACGCACTTCTGATTCTCCCCTTCTCTCTGAGGTTCCTAAGCGAACCAAAGGAAATCAACCCAGATACAGAAACACAAAGGATTCGCTCACAACTAAGATTCCTATTCTCGTACCTTCCGAATCCCTCACTTCACTGGTATGGCTTTTAAGGCTCCCACTGTGACTTTTTTCGCCTTTTTTTTCTTCCCTATTTCATTACCCGGGTTCTTCATTTTTCAGTCCCTTAAGGTGTCTAGATGTGCTATTGATCGAATTGCTTATAGTGATGTGTTTTTTTTATGGTTTTTGGTTTCTTTAGCTGCTTCCCAATGCGCACGTTGGCGAGATTTATCCTCCTTATTTGTGTTTCTGTCTGATATTTCTCTATTTAGGTGTGTGTTTTTCAATAGTGTTTTGGGTTTTTGTCCACATTCCTTTCTGGCTTTGTCTTTTGCTATTTGATTCTGATCATTATTTGTTATTGTGTTTGGTATTACTCCCATGTAGGTGTGTGTTTTTCCTCTGATCGTTTTAATCTTCCGACTGTGGTTGTCAGCCCGTACAACTCGAATTCTGTCAGCTCTGTCTTTTTTTCTCTCAGAACATTCAACAAACACTTGATCTCATAA

mRNA sequence

AGGAAACACCTCAGTTTTCCAATAAACGAGGCCCAGAATCGAATAGTAACAGACAAAGCGAGAAACGAATGGAGATTCCAAAAATCTAACATCCTATTGAAGAACACGAACCTAAATGGGAGTGGGATTCGGAAGGTACGAGAATTGGAATCTTAGTTGTGAGCGAATCCTTTGTGTTTCTGTATCTGGGTTGATTTCCTTTGGTTCGCTTGGGAACCTCAGAGAGAAGGGGAGAATCAGAAGTGCAAGACGAGCGTCTCTGGGCTGAAACGACGAGGGCTTGAAGGCGGATGGGCTAAATTGGAAGCCGAATCTTCTATCTACTTAAACGTCGTCGTCTTCTTCCCCCGCGAATATTTTATCTCTTCTCCGTTGCCGGGTTTGTGCTGCGAAATGAATTTTGAGTTCCTAAGCGAACCAAAGGAAATCAACCCAGATACAGAAACACAAAGGATTCGCTCACAACTAAGATTCCTATTCTCGTACCTTCCGAATCCCTCACTTCACTGGTATGGCTTTTAAGGCTCCCACTGTGACTTTTTTCGCCTTTTTTTTCTTCCCTATTTCATTACCCGGGTTCTTCATTTTTCAGTCCCTTAAGGTGTCTAGATGTGCTATTGCTGCTTCCCAATGCGCACGTTGGCGAGATTTATCCTCCTTATTTGTGTTTCTGTCTGATATTTCTCTATTTAGCCCGTACAACTCGAATTCTGTCAGCTCTGTCTTTTTTTCTCTCAGAACATTCAACAAACACTTGATCTCATAA

Coding sequence (CDS)

AGGAAACACCTCAGTTTTCCAATAAACGAGGCCCAGAATCGAATAGTAACAGACAAAGCGAGAAACGAATGGAGATTCCAAAAATCTAACATCCTATTGAAGAACACGAACCTAAATGGGAGTGGGATTCGGAAGGTACGAGAATTGGAATCTTAGTTGTGAGCGAATCCTTTGTGTTTCTGTATCTGGGTTGATTTCCTTTGGTTCGCTTGGGAACCTCAGAGAGAAGGGGAGAATCAGAAGTGCAAGACGAGCGTCTCTGGGCTGAAACGACGAGGGCTTGAAGGCGGATGGGCTAAATTGGAAGCCGAATCTTCTATCTACTTAAACGTCGTCGTCTTCTTCCCCCGCGAATATTTTATCTCTTCTCCGTTGCCGGGTTTGTGCTGCGAAATGAATTTTGAGTTCCTAAGCGAACCAAAGGAAATCAACCCAGATACAGAAACACAAAGGATTCGCTCACAACTAAGATTCCTATTCTCGTACCTTCCGAATCCCTCACTTCACTGGTATGGCTTTTAAGGCTCCCACTGTGACTTTTTTCGCCTTTTTTTTCTTCCCTATTTCATTACCCGGGTTCTTCATTTTTCAGTCCCTTAAGGTGTCTAGATGTGCTATTGCTGCTTCCCAATGCGCACGTTGGCGAGATTTATCCTCCTTATTTGTGTTTCTGTCTGATATTTCTCTATTTAGCCCGTACAACTCGAATTCTGTCAGCTCTGTCTTTTTTTCTCTCAGAACATTCAACAAACACTTGATCTCATAA

Protein sequence

RKHLSFPINEAQNRIVTDKARNEWRFQKSNILLKNTNLNGSGIRKVRELES*L*ANPLCFCIWVDFLWFAWEPQREGENQKCKTSVSGLKRRGLEGGWAKLEAESSIYLNVVVFFPREYFISSPLPGLCCEMNFEFLSEPKEINPDTETQRIRSQLRFLFSYLPNPSLHWYGF*GSHCDFFRLFFLPYFITRVLHFSVP*GV*MCYCCFPMRTLARFILLICVSV*YFSI*PVQLEFCQLCLFFSQNIQQTLDLIX
Homology
[Close]
BLAST of Chy6G105860 vs. ExPASy TrEMBL
Match: A0A0A0L8E7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118160 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-09
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 89  LKRRGLEGGWAKLEAESSIYLNVVVFFPREYFISSPLP 127
           L+RRGLE GWAKLEAESSIYLNVVVFFP EYFISSP+P
Sbjct: 47  LRRRGLEDGWAKLEAESSIYLNVVVFFPCEYFISSPVP 84

[Close]
BLAST of Chy6G105860 vs. NCBI nr
Match: KGN56381.1 (hypothetical protein Csa_009673 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.82e-11
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 89  LKRRGLEGGWAKLEAESSIYLNVVVFFPREYFISSPLP 126
           L+RRGLE GWAKLEAESSIYLNVVVFFP EYFISSP+P
Sbjct: 47  LRRRGLEDGWAKLEAESSIYLNVVVFFPCEYFISSPVP 84

The following BLAST results are available for this feature:
BLAST of Chy6G105860 vs.
Match NameE-valueIdentityDescription
BLAST of Chy6G105860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8E72.4e-0989.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118160 PE=4 SV=1[more]
BLAST of Chy6G105860 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56381.11.82e-1189.47hypothetical protein Csa_009673 [Cucumis sativus][more]
BLAST of Chy6G105860 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy6G105860.1Chy6G105860.1mRNA