Chy6G105660 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G105660
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Late cornified envelope protein 1E
Location	chrH06: 300424 .. 300831 (+)
RNA-Seq Expression	Chy6G105660
Synteny	Chy6G105660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGAATCCCCCTCTCTGTTGTCTATGCGGCGACGTCGGGTTTCCAGCCAAGCTCTTCCGCTGCACCAATTGCTCCAACCGATTTCAGCACTCGTAAGACTCTCACACACACACATGCACACACCCTCTTCTTTATATATATTCTTTCACTTTTGATTTCTCTCTAATAGCATGTCAATTTTCCAGTTACTGTAGTAACTACTACTGCGGGGAATCGGGTGATGCAACAATTCGAGTATGTGATTGGTGCCGAAGTGAACAAAGAACCTGCCGTCCTGCCTTTGCAAGCACTACATCCCAAAAGGATAAAAAAATGACAGAAAGAAGAAGCTCTGCCGTCGGACTGCCTTCCCCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAAGATGTCACGTGTTAG

mRNA sequence

ATGGATTTGAATCCCCCTCTCTGTTGTCTATGCGGCGACGTCGGGTTTCCAGCCAAGCTCTTCCGCTGCACCAATTGCTCCAACCGATTTCAGCACTCTTACTGTAGTAACTACTACTGCGGGGAATCGGGTGATGCAACAATTCGAGTATGTGATTGGTGCCGAAGTGAACAAAGAACCTGCCGTCCTGCCTTTGCAAGCACTACATCCCAAAAGGATAAAAAAATGACAGAAAGAAGAAGCTCTGCCGTCGGACTGCCTTCCCCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAAGATGTCACGTGTTAG

Coding sequence (CDS)

ATGGATTTGAATCCCCCTCTCTGTTGTCTATGCGGCGACGTCGGGTTTCCAGCCAAGCTCTTCCGCTGCACCAATTGCTCCAACCGATTTCAGCACTCTTACTGTAGTAACTACTACTGCGGGGAATCGGGTGATGCAACAATTCGAGTATGTGATTGGTGCCGAAGTGAACAAAGAACCTGCCGTCCTGCCTTTGCAAGCACTACATCCCAAAAGGATAAAAAAATGACAGAAAGAAGAAGCTCTGCCGTCGGACTGCCTTCCCCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAAGATGTCACGTGTTAG

Protein sequence

MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPAFASTTSQKDKKMTERRSSAVGLPSPRPAPRRYKLLKDVTC*

Homology

[Close]

BLAST of Chy6G105660 vs. ExPASy TrEMBL
Match: A0A0A0L5P1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.9e-54
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60

Query: 61  CRPAFASTTSQKDKKMTERRSSAVGLPSPRPAPRRYKLLKDVTC 105
           CRPAFASTTSQK  K+TERRSSAVGLPSPRPAPRRYKLLKDV C
Sbjct: 61  CRPAFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of Chy6G105660 vs. ExPASy TrEMBL
Match: A0A5D3DB67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00440 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.1e-48
Identity = 94/105 (89.52%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLNPPLCCLCGDVGFPA LFRCTNCSNRFQHSYCSNYY GESGDA IRVCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 60

Query: 61  CRP-AFASTTSQKDKKMTERRSSAVGLPSPRPAPRRYKLLKDVTC 105
            RP AFA+TTSQKD+K+TE RSSA GLPSPRPAPRRYKLLKDV C
Sbjct: 61  RRPAAFATTTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 105

[Close]

BLAST of Chy6G105660 vs. ExPASy TrEMBL
Match: A0A1S3AVF1 (uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.1e-48
Identity = 94/105 (89.52%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLNPPLCCLCGDVGFPA LFRCTNCSNRFQHSYCSNYY GESGDA IRVCDWCRSEQRT
Sbjct: 41  MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 100

Query: 61  CRP-AFASTTSQKDKKMTERRSSAVGLPSPRPAPRRYKLLKDVTC 105
            RP AFA+TTSQKD+K+TE RSSA GLPSPRPAPRRYKLLKDV C
Sbjct: 101 RRPAAFATTTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of Chy6G105660 vs. ExPASy TrEMBL
Match: A0A6J1ED69 (uncharacterized protein LOC111432109 OS=Cucurbita moschata OX=3662 GN=LOC111432109 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.9e-39
Identity = 81/112 (72.32%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLN PLCCLCGDVGFPAKLFRC NCSNRFQHSYCSN+YCGES D   R+CDWCR+E  T
Sbjct: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCGESADPITRLCDWCRTEHTT 60

Query: 61  CRPAFAS----TTSQKDKKM----TERRSSAVGLPSPRPAPRRYKLLKDVTC 105
            RP+ A+     TSQK  KM    TE +SSA G+PSPRPAPRRYKLLKDV C
Sbjct: 61  RRPSPAAANNGATSQKPHKMTDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112

[Close]

BLAST of Chy6G105660 vs. ExPASy TrEMBL
Match: A0A6J1IAU2 (uncharacterized protein LOC111472884 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472884 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.5e-28
Identity = 67/104 (64.42%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 5   PPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPA 64
           PP+CCLCGDVGFPA LFRCT CS+RFQHSYCSNYY GES +A I VCDWCR E+R  R  
Sbjct: 16  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GESAEA-IEVCDWCRCERRCGRRG 75

Query: 65  FAS----TTSQKDKKMTERRSSAVGLPSPRPAPRRYKLLKDVTC 105
            A+      SQK     +R  ++ G+PSPR APRRYKLLKDV C
Sbjct: 76  SAARKFGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 117

[Close]

BLAST of Chy6G105660 vs. NCBI nr
Match: XP_004134287.1 (uncharacterized protein LOC101222685 [Cucumis sativus] >KGN56359.1 hypothetical protein Csa_010459 [Cucumis sativus])

HSP 1 Score: 220 bits (561), Expect = 1.64e-72
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60

Query: 61  CRPAFASTTSQKDKKMTERRSSAVGLPSPRPAPRRYKLLKDVTC 104
           CRPAFASTTSQK  K+TERRSSAVGLPSPRPAPRRYKLLKDV C
Sbjct: 61  CRPAFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of Chy6G105660 vs. NCBI nr
Match: KAA0048831.1 (uncharacterized protein E6C27_scaffold171G00440 [Cucumis melo var. makuwa] >TYK20783.1 uncharacterized protein E5676_scaffold291G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 200 bits (509), Expect = 1.46e-64
Identity = 94/105 (89.52%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLNPPLCCLCGDVGFPA LFRCTNCSNRFQHSYCSNYY GESGDA IRVCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 60

Query: 61  CRPA-FASTTSQKDKKMTERRSSAVGLPSPRPAPRRYKLLKDVTC 104
            RPA FA+TTSQKD+K+TE RSSA GLPSPRPAPRRYKLLKDV C
Sbjct: 61  RRPAAFATTTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 105

[Close]

BLAST of Chy6G105660 vs. NCBI nr
Match: XP_008437789.1 (PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo])

HSP 1 Score: 200 bits (509), Expect = 5.32e-64
Identity = 94/105 (89.52%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLNPPLCCLCGDVGFPA LFRCTNCSNRFQHSYCSNYY GESGDA IRVCDWCRSEQRT
Sbjct: 41  MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 100

Query: 61  CRPA-FASTTSQKDKKMTERRSSAVGLPSPRPAPRRYKLLKDVTC 104
            RPA FA+TTSQKD+K+TE RSSA GLPSPRPAPRRYKLLKDV C
Sbjct: 101 RRPAAFATTTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of Chy6G105660 vs. NCBI nr
Match: XP_038904003.1 (uncharacterized protein LOC120090420 [Benincasa hispida])

HSP 1 Score: 183 bits (464), Expect = 1.17e-57
Identity = 88/109 (80.73%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MD N PLCCLCGDVGF A LFRC+NCSNRFQHSYCSNYYCGESGDATI+VCDWCRS+QRT
Sbjct: 1   MDFNRPLCCLCGDVGFSAHLFRCSNCSNRFQHSYCSNYYCGESGDATIKVCDWCRSDQRT 60

Query: 61  CRPAFASTTSQKDKKM-----TERRSSAVGLPSPRPAPRRYKLLKDVTC 104
            RP  A TT QKD K+     TERRSSA GLPSPRPAPRRYKLLKDV C
Sbjct: 61  RRPGSA-TTPQKDHKISDNQITERRSSAAGLPSPRPAPRRYKLLKDVMC 108

[Close]

BLAST of Chy6G105660 vs. NCBI nr
Match: XP_022924678.1 (uncharacterized protein LOC111432109 [Cucurbita moschata])

HSP 1 Score: 169 bits (427), Expect = 5.84e-52
Identity = 81/112 (72.32%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLN PLCCLCGDVGFPAKLFRC NCSNRFQHSYCSN+YCGES D   R+CDWCR+E  T
Sbjct: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCGESADPITRLCDWCRTEHTT 60

Query: 61  CRPAFAST----TSQKDKKMT----ERRSSAVGLPSPRPAPRRYKLLKDVTC 104
            RP+ A+     TSQK  KMT    E +SSA G+PSPRPAPRRYKLLKDV C
Sbjct: 61  RRPSPAAANNGATSQKPHKMTDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112

[Close]

BLAST of Chy6G105660 vs. TAIR 10
Match: AT3G60520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.4 bits (259), Expect = 5.8e-23
Identity = 58/130 (44.62%), Postives = 77/130 (59.23%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCR----- 60
           +DL   +CC+CGDVGF  KLF C+ C NRFQHSYCS+YY  E  D  I++CDWC+     
Sbjct: 2   VDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYY-KEQAD-PIKICDWCQCEAKS 61

Query: 61  -----------SEQRTCRPAFASTTSQ-KDKKMTERRSSAV---------GLPSPRPAPR 105
                      S +R+ R  ++S   Q K +++ +  SS++         G+PSPRPA R
Sbjct: 62  RTGAKHGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATR 121

[Close]

BLAST of Chy6G105660 vs. TAIR 10
Match: AT1G02070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.1 bits (209), Expect = 3.6e-17
Identity = 52/130 (40.00%), Postives = 61/130 (46.92%), Query Frame = 0


Query: 7   LCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPAFA 66
           +CC+CGDVGF  KLF C +C  RFQHSYCSNYY G+  + T  +CDWCRS+ R       
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYY-GQFAEPT-EICDWCRSDDRKLSNVAR 63

Query: 67  STTSQKDK-----------------------KMTERRSSAV---------GLPSPRPAPR 105
              S   K                       K    R   V         G+ SP+ A R
Sbjct: 64  HGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTATR 123

The following BLAST results are available for this feature:

BLAST of Chy6G105660 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G105660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5P1	2.9e-54	96.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1	[more]
A0A5D3DB67	3.1e-48	89.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AVF1	3.1e-48	89.52	uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=...	[more]
A0A6J1ED69	9.9e-39	72.32	uncharacterized protein LOC111432109 OS=Cucurbita moschata OX=3662 GN=LOC1114321...	[more]
A0A6J1IAU2	3.5e-28	64.42	uncharacterized protein LOC111472884 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Chy6G105660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134287.1	1.64e-72	96.15	uncharacterized protein LOC101222685 [Cucumis sativus] >KGN56359.1 hypothetical ...	[more]
KAA0048831.1	1.46e-64	89.52	uncharacterized protein E6C27_scaffold171G00440 [Cucumis melo var. makuwa] >TYK2...	[more]
XP_008437789.1	5.32e-64	89.52	PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo]	[more]
XP_038904003.1	1.17e-57	80.73	uncharacterized protein LOC120090420 [Benincasa hispida]	[more]
XP_022924678.1	5.84e-52	72.32	uncharacterized protein LOC111432109 [Cucurbita moschata]	[more]

BLAST of Chy6G105660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60520.1	5.8e-23	44.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G02070.1	3.6e-17	40.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..93
None	No IPR available	PANTHER	PTHR33779:SF11	OS02G0658200 PROTEIN	coord: 69..104
None	No IPR available	PANTHER	PTHR33779	EXPRESSED PROTEIN	coord: 69..104
None	No IPR available	PANTHER	PTHR33779	EXPRESSED PROTEIN	coord: 7..74
None	No IPR available	PANTHER	PTHR33779:SF11	OS02G0658200 PROTEIN	coord: 7..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G105660.1	Chy6G105660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding