Chy5G104660 (gene) Cucumber (hystrix) v1

Overview


Name	Chy5G104660
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH05: 18159284 .. 18159701 (+)
RNA-Seq Expression	Chy5G104660
Synteny	Chy5G104660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTCCCTAGTTGGAATGCTCGGGGTTTGGAGAGCCTTCGAGAATTCAGAGCCGTGCGTGATTTGGTCCGTTCTAAAAATTCCAGTATTATGTTTCTCTCGACAAAAAGCGGAGAGGAAGTCACTAATCAGATCAAGATCATGGGTAATTTTCCTGGTTTCTTTAAGTCAAAATGGTTCCATAAAAAGGCACCTGTAAGAAGGGAACAGTACGAAATCAAAGAGACGACAGATGCAAATGGTCAATGATTCGAGGATCCCGTTATCTTGAAAAGAACTTTTATTGACTATTCTTCTCCCTTCTTCTTGCCCAAGTTTTGATAATACTGGAGCTGTTATTGAGAGTCTCTCCCCAAAAGCTGATGCTATAATGAATTCTATGTTCTTTTCTCCCAATGTGAGCAGTGAGCACTGA

mRNA sequence

ATGAATCTCCCTAGTTGGAATGCTCGGGGTTTGGAGAGCCTTCGAGAATTCAGAGCCGTGCGTGATTTGGTCCGTTCTAAAAATTCCAGTATTATGTTTCTCTCGACAAAAAGCGGAGAGGAAGTCACTAATCAGATCAAGATCATGGAACTTTTATTGACTATTCTTCTCCCTTCTTCTTGCCCAAGTTTTGATAATACTGGAGCTGTTATTGAGAGTCTCTCCCCAAAAGCTGATGCTATAATGAATTCTATGTTCTTTTCTCCCAATGTGAGCAGTGAGCACTGA

Coding sequence (CDS)

ATGAATCTCCCTAGTTGGAATGCTCGGGGTTTGGAGAGCCTTCGAGAATTCAGAGCCGTGCGTGATTTGGTCCGTTCTAAAAATTCCAGTATTATGTTTCTCTCGACAAAAAGCGGAGAGGAAGTCACTAATCAGATCAAGATCATGGAACTTTTATTGACTATTCTTCTCCCTTCTTCTTGCCCAAGTTTTGATAATACTGGAGCTGTTATTGAGAGTCTCTCCCCAAAAGCTGATGCTATAATGAATTCTATGTTCTTTTCTCCCAATGTGAGCAGTGAGCACTGA

Protein sequence

MNLPSWNARGLESLREFRAVRDLVRSKNSSIMFLSTKSGEEVTNQIKIMELLLTILLPSSCPSFDNTGAVIESLSPKADAIMNSMFFSPNVSSEH*

Homology

[Close]

BLAST of Chy5G104660 vs. ExPASy TrEMBL
Match: A0A0A0LFT0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000670 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.5e-38
Identity = 85/95 (89.47%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 1  MNLPSWNARGLESLREFRAVRDLVRSKNSSIMFLSTKSGEEVTNQIKIMELLLTILLPSS 60
          MNLPSWNARGLESLR FRAV DL+RSKNSSIMF STKSGEEV NQIKIMELLLTILLPSS
Sbjct: 1  MNLPSWNARGLESLRAFRAVSDLIRSKNSSIMFFSTKSGEEVANQIKIMELLLTILLPSS 60

Query: 61 CPSFDNTGAVIESLSPKADAIMNSMFFSPNVSSEH 96
          CPS DNTGAV ES+SPKADAIM+SM FSPNVSSEH
Sbjct: 61 CPSCDNTGAVNESISPKADAIMDSMLFSPNVSSEH 95

[Close]

BLAST of Chy5G104660 vs. ExPASy TrEMBL
Match: A0A5D3CFS9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00760 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 50 ELLLTILLPSSCPSFDNTGAVIESLSPKADAIMNSMFFSPNV 92
          +LLL ILLPSSCPS DN GAVIES+SPKADAIMNSM FSPN+
Sbjct: 49 QLLLIILLPSSCPSSDNPGAVIESISPKADAIMNSMLFSPNM 90

[Close]

BLAST of Chy5G104660 vs. NCBI nr
Match: KGN60558.1 (hypothetical protein Csa_019334 [Cucumis sativus])

HSP 1 Score: 166 bits (421), Expect = 1.96e-51
Identity = 85/95 (89.47%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 1  MNLPSWNARGLESLREFRAVRDLVRSKNSSIMFLSTKSGEEVTNQIKIMELLLTILLPSS 60
          MNLPSWNARGLESLR FRAV DL+RSKNSSIMF STKSGEEV NQIKIMELLLTILLPSS
Sbjct: 1  MNLPSWNARGLESLRAFRAVSDLIRSKNSSIMFFSTKSGEEVANQIKIMELLLTILLPSS 60

Query: 61 CPSFDNTGAVIESLSPKADAIMNSMFFSPNVSSEH 95
          CPS DNTGAV ES+SPKADAIM+SM FSPNVSSEH
Sbjct: 61 CPSCDNTGAVNESISPKADAIMDSMLFSPNVSSEH 95

[Close]

BLAST of Chy5G104660 vs. NCBI nr
Match: KAA0061510.1 (hypothetical protein E6C27_scaffold41G00710 [Cucumis melo var. makuwa] >TYK10763.1 hypothetical protein E5676_scaffold332G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 1.67e-13
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 50 ELLLTILLPSSCPSFDNTGAVIESLSPKADAIMNSMFFSPNV 91
          +LLL ILLPSSCPS DN GAVIES+SPKADAIMNSM FSPN+
Sbjct: 49 QLLLIILLPSSCPSSDNPGAVIESISPKADAIMNSMLFSPNM 90

The following BLAST results are available for this feature:

BLAST of Chy5G104660 vs.


Match Name	E-value	Identity	Description

BLAST of Chy5G104660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFT0	3.5e-38	89.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000670 PE=4 SV=1	[more]
A0A5D3CFS9	1.5e-09	83.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Chy5G104660 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60558.1	1.96e-51	89.47	hypothetical protein Csa_019334 [Cucumis sativus]	[more]
KAA0061510.1	1.67e-13	83.33	hypothetical protein E6C27_scaffold41G00710 [Cucumis melo var. makuwa] >TYK10763...	[more]

BLAST of Chy5G104660 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy5G104660.1	Chy5G104660.1	mRNA