Chy5G104310 (gene) Cucumber (hystrix) v1

Overview
NameChy5G104310
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH05: 17914390 .. 17917577 (+)
RNA-Seq ExpressionChy5G104310
SyntenyChy5G104310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACCCTAAAGCCTCAGCCATGGCGTCTTGAACAGAGAGAAACAGCCATGGAAATTTCGGCAATCTGCAACTGTGAGAAATGTTTTCATCCTTTTTTTTCTCTCTTTTTTCAGTTTTCTTTTTCGCTCGGTCCCTTTCTTTTAGGCACGTGACCATTCTTTGTCCCCTTCCTCTTACTTTTCTTCGGATTTATTCTTTTCCATTTTTTTCCTTTGCTAAATAATTTTCGGAACTATATATATATATAATAATAATAATAACATGGTTTTCTAAACGGTCGGTTGTTGAATATTTTATATTTTTTTGTTTTAATTCTACAAATATATAGGTAATCTCTTATCAATGATAAAAGACCATGATAGTCTCGATCACCAATATATTTTGCTTTATTTACAATATTATTTTAAATGTTGTCATATGCTTCATTATTATTTCTAAAGTTGCCACCAATTATAATTAAAATAAATAAATAAAGATTGAAATTAAGTGAGTTTTGTAGATAGTTGCATCAAGTAATACTTTTAGGTATACTAAGTGTAGATCAATATTTATAAAAAATTGCAAATATAACAAAATCTATTAACGATAGACTCTTACCAGTGATATGGTTAATCACGGTAACATAATCTATTTACACTCTATGTAATGAGCTTTTGTACTAGTTTTTTAGGTGTAAAAAATTGTATTTTTTATTATTCTTAAAAAACTTCAATATTACTCTTACCTTTAAATTGACAAAATAAACTAAAATATTTAAGAACTATAGAAAAATGTTGAGTTCTATCAACGATAGAAACTGATAAACTTCTATTACTCTATTAATGCCACTGATATAGTCTATCAATGTCTATTATTGACATAATCTGAAATTTTATTATGTGTTAGTAAATATTTTATCAAATTTGTTGTTTTTGACAAATGTCATTTATAAAAAATAACTTTAATTTTTTTAAGTGGTTTTATCATTGTACTTAAAAATGATGCAAATCATTGTTTGAAATGGAGAAAAAATATGTTTGATTTTCAAAAACAAAAAACAAAATGGTTACCCAACGAGATCTTAAATAACCATTTTGTTTTTTCTTGTTTTTTAATTAAGTTTATTAACTTCTCTCCTATCTCTAAATCTTTTGCATTAATATCTTGTATTTATCTCTATTTTAAAAATTGAGTCAAATTTTAAAAATTAAAAATTAAATTGTTTTTTAAATTTTGAATAATTTTCCATTTCAAAAAATAAAAAAAGAAATAGCCATAGTTTCATGATTGAAAGACATGAAACACTTTAATAAAATCATAAAATTTCAATCAATATCAATAATTTATTAGTTCACTATAAATGTAAACAAAAAAAAATAGATACAACAATTGGTCTAAAATATCAATATAATAACAAATAAATAAATATATAATATATTGTTTCTTTGTTTTCTCCATTTTTTTTAGTTATGAATTTAAATTACTTAGTTTAACACAAATATAGTTAAATAATTTAGCCATTTCTTCCGACTAGTTTACCATTTATAAACCTATACAAATATTTAAAACAACTTTATATTAGATTAGAATCAAACTAATGTATCTATTACCATACAAATATTTAAAAACATGAAATATAACTCTACTTTTATTGAACCACTCCCTTTTAAAAAAATCACATTTTCTAACAAGAGACCGTTGTACGTCTCTTTCGAGATATTCAATAAAATTGGAACGATCTCTAAAAATAGGGACCTTTATATTATTATTTTTTCTTTATAATATATAAACAAAATGACATACTCAACATTTTACAATAAAAGCAACGAGATTTATGAGCCACGTCGGGTAAGATAACTCTAAAAGTTTCATTTGTTGCAATTTCATTGACTTTAAAGTTTCTAATTAACCTCGTTTTGTTAGGACTTGGAAAAAAGAATGTGATTACATTTATTGCAAGAAGTTGGTGCACATAATTAATATATATGGGCATGTTACCTTTATTCTTTTCTTTTTCCATATTCATATCACATTTATTTTAATCCCTAAATAGGTGACTTTTGGTGTTTAACACATTTTAGAATGATTTTAAAAGAATGATTATATTTCATTTTTCATTAATTGATTGTTTGATAATGGAGTTTGAGTAACTATTTCGTTGTCAATGGGTGGTGCATCTTCTTACAATATCTCTTTGGGAGCTAAAAACTAAAATATATCACGTTTGTCAATACACAGGAAATTTGTTTCTAAGGATGATAATGATAAAATGACCTTTCACTTGTGAAAAGACTCATTTAACCATGAGAATCACCTGCGTGCATAGTGATTGAAACTCAGCTCTCCTCTCACTCATATTCATTGTTTGTCTTGCAAAAGTAGTCATGACAGCTACTTGATGCTTGTGCTAAATGCTCCCACTTTCTCCCCATCGCCTGTTTCTTGTTTGTTTTGCAGAGCCACATGATACCTGTATTTGAAATCTCATGAGCAACTCCAGTAAAACATAAAAGAGGACGTCGAAAGGAAGATGAACGAGTAGAACGCAATATTAAAAAAATGGTGCGGTAAATTTTTGTATGAGGCACGACTAAGCCAGGAACAAACGGGTTTAAAAAAAATGAAAAAACCAGAAAGAAGAATGAAGAAATATTGTATTTGAGATTAAAGTGGTAATCTGGTGAATTTTCATTAGGTAAACAGGTAAGATCCAATTTTCTCATTTAACTTGACATAGTATAATTTCAATTTAAAATTTTATCTAATAAATTAACAAACTAATTTTAATTTTATGATTATTAGATTTATATTTATAATCTTAAAATTGAATGAACTAAATTTATAGTTTCAAAAATTTAGAATCAAATAGATATATAGTTTTAAATTGACCTAATAATTTTTGTAATATACACTTTTACCCTTACTTCCTATCAATATTGAGATAAACTAAAATTTATTTATGTCTTTTCCTTCCAAGGGGAAGTTAGAGATAAACAAGGCCTCTCCTCTCATAATTTCATAAATATCACAAATCTGAGAGATCAACACTACTCTTCAATCCTCATTGTTCTTTTTAACCTTTACCAGTTTTCATCTCATCTCCGTTTCTCTTTTACCTCACGACTTCTCGACAAAAAGTTTCCGTTTCGATTTTACTTCTCCGGCCACTCTCCCTCACGGCGGCGCAGCTGCGCCGGCAATATAA

mRNA sequence

ATGGAAACCCTAAAGCCTCAGCCATGGCGTCTTGAACAGAGAGAAACAGCCATGGAAATTTCGGCAATCTGCAACTGGGAAGTTAGAGATAAACAAGGCCTCTCCTCTCATAATTTCATAAATATCACAAATCTGAGAGATCAACACTACTCTTCAATCCTCATTGTTCTTTTTAACCTTTACCAGTTTTCATCTCATCTCCGTTTCTCTTTTACCTCACGACTTCTCGACAAAAAGTTTCCGTTTCGATTTTACTTCTCCGGCCACTCTCCCTCACGGCGGCGCAGCTGCGCCGGCAATATAA

Coding sequence (CDS)

ATGGAAACCCTAAAGCCTCAGCCATGGCGTCTTGAACAGAGAGAAACAGCCATGGAAATTTCGGCAATCTGCAACTGGGAAGTTAGAGATAAACAAGGCCTCTCCTCTCATAATTTCATAAATATCACAAATCTGAGAGATCAACACTACTCTTCAATCCTCATTGTTCTTTTTAACCTTTACCAGTTTTCATCTCATCTCCGTTTCTCTTTTACCTCACGACTTCTCGACAAAAAGTTTCCGTTTCGATTTTACTTCTCCGGCCACTCTCCCTCACGGCGGCGCAGCTGCGCCGGCAATATAA

Protein sequence

METLKPQPWRLEQRETAMEISAICNWEVRDKQGLSSHNFINITNLRDQHYSSILIVLFNLYQFSSHLRFSFTSRLLDKKFPFRFYFSGHSPSRRRSCAGNIX
Homology
[Close]
BLAST of Chy5G104310 vs. ExPASy TrEMBL
Match: A0A0A0LIS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G002520 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.2e-27
Identity = 68/84 (80.95%), Postives = 68/84 (80.95%), Query Frame = 0 

Query: 1  METLKPQPWRLEQRETAMEISAICNWEVRDKQGLSSHNFINITNLRDQHYSSILIVLFNL 60
          METLK QPWRLEQRETAMEISAICNWEV DKQGLSSHNFINITNLRDQHYSSILIVLF L
Sbjct: 1  METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL 60

Query: 61 YQFSSHLRFSFTSRLLDKKFPFRF 85
          YQFSS LRF          F F F
Sbjct: 61 YQFSSDLRFPLPHDFSKNSFRFDF 84

[Close]
BLAST of Chy5G104310 vs. NCBI nr
Match: KGN60597.1 (hypothetical protein Csa_019341 [Cucumis sativus])

HSP 1 Score: 129 bits (325), Expect = 1.25e-36
Identity = 68/84 (80.95%), Postives = 68/84 (80.95%), Query Frame = 0 

Query: 1  METLKPQPWRLEQRETAMEISAICNWEVRDKQGLSSHNFINITNLRDQHYSSILIVLFNL 60
          METLK QPWRLEQRETAMEISAICNWEV DKQGLSSHNFINITNLRDQHYSSILIVLF L
Sbjct: 1  METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL 60

Query: 61 YQFSSHLRFSFTSRLLDKKFPFRF 84
          YQFSS LRF          F F F
Sbjct: 61 YQFSSDLRFPLPHDFSKNSFRFDF 84

The following BLAST results are available for this feature:
BLAST of Chy5G104310 vs.
Match NameE-valueIdentityDescription
BLAST of Chy5G104310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIS32.2e-2780.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G002520 PE=4 SV=1[more]
BLAST of Chy5G104310 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60597.11.25e-3680.95hypothetical protein Csa_019341 [Cucumis sativus][more]
BLAST of Chy5G104310 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy5G104310.1Chy5G104310.1mRNA