Chy5G103420 (gene) Cucumber (hystrix) v1

Overview
NameChy5G103420
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH05: 17189300 .. 17189705 (-)
RNA-Seq ExpressionChy5G103420
SyntenyChy5G103420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGTGTGTGTAGATGAACCTGATATGGAGAAACAGGGCAGAAAAGGCAGGAAGGCAGATGCAAAAGGAGGGGAAAAGAAATCCCAGTGATGAGAGACAGCACTGGATAGGCTGTAGCTTAATGAAGGGATATGGAATCTTTACAATATGCTGCTACCTGTCAATAGAAAAAAGAAAAATAAATAAATAAGTGAGAAATCATATCAGTCTATTCTGTCGCAGCACTCATCTTATGCCAATGGACACACAGAAAACTTCAATTATGTATTTATATTTTTTTCTTTTCAGACTTGTACGTACCTCACGGCTTATGACTCACTTGGCTGCTTCCCTACTTCCTCCAGCAAAAGCTGCCATTGTTTTTTTTTTTCTCTCTGACTGCCTCTCACTTATGAAAGCTTGA

mRNA sequence

ATGGGAGTGTGTGTAGATGAACCTGATATGGAGAAACAGGGCAGAAAAGGCAGGAAGGCAGATGCAAAAGGAGGGGAAAAGAAATCCCAACTTGTACGTACCTCACGGCTTATGACTCACTTGGCTGCTTCCCTACTTCCTCCAGCAAAAGCTGCCATTGTTTTTTTTTTTCTCTCTGACTGCCTCTCACTTATGAAAGCTTGA

Coding sequence (CDS)

ATGGGAGTGTGTGTAGATGAACCTGATATGGAGAAACAGGGCAGAAAAGGCAGGAAGGCAGATGCAAAAGGAGGGGAAAAGAAATCCCAACTTGTACGTACCTCACGGCTTATGACTCACTTGGCTGCTTCCCTACTTCCTCCAGCAAAAGCTGCCATTGTTTTTTTTTTTCTCTCTGACTGCCTCTCACTTATGAAAGCTTGA

Protein sequence

MGVCVDEPDMEKQGRKGRKADAKGGEKKSQLVRTSRLMTHLAASLLPPAKAAIVFFFLSDCLSLMKA*
Homology
[Close]
BLAST of Chy5G103420 vs. ExPASy TrEMBL
Match: A0A0A0LI37 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G007430 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.0e-21
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 1  MGVCVDEPDMEKQGRKGRKADAKGGEKKSQLVRTSRLMTHLAASLLPPAKAAIVFFFLSD 60
          M VCVDEPDMEKQGRKG+K DAKGG+KKSQLVRTSRLMTHLAA LLPPAKAAIV F  SD
Sbjct: 1  MRVCVDEPDMEKQGRKGKKTDAKGGKKKSQLVRTSRLMTHLAACLLPPAKAAIV-FLPSD 60

Query: 61 CLSLMKA 68
          CLSLMKA
Sbjct: 61 CLSLMKA 66

[Close]
BLAST of Chy5G103420 vs. NCBI nr
Match: KGN60699.1 (hypothetical protein Csa_019283 [Cucumis sativus])

HSP 1 Score: 109 bits (272), Expect = 1.43e-29
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 1  MGVCVDEPDMEKQGRKGRKADAKGGEKKSQLVRTSRLMTHLAASLLPPAKAAIVFFFLSD 60
          M VCVDEPDMEKQGRKG+K DAKGG+KKSQLVRTSRLMTHLAA LLPPAKAAIVF   SD
Sbjct: 1  MRVCVDEPDMEKQGRKGKKTDAKGGKKKSQLVRTSRLMTHLAACLLPPAKAAIVFLP-SD 60

Query: 61 CLSLMKA 67
          CLSLMKA
Sbjct: 61 CLSLMKA 66

The following BLAST results are available for this feature:
BLAST of Chy5G103420 vs.
Match NameE-valueIdentityDescription
BLAST of Chy5G103420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI376.0e-2188.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G007430 PE=4 SV=1[more]
BLAST of Chy5G103420 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60699.11.43e-2988.06hypothetical protein Csa_019283 [Cucumis sativus][more]
BLAST of Chy5G103420 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy5G103420.1Chy5G103420.1mRNA