Chy5G102970 (gene) Cucumber (hystrix) v1

Overview
NameChy5G102970
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH05: 16884900 .. 16885359 (-)
RNA-Seq ExpressionChy5G102970
SyntenyChy5G102970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCCTGCATCGGCTGCGACTCCGAAATCCACCGCCGTCCTTACCACCGCAACTGCGGCTGCGCTCTCCACAAATCTCGCCGTCAACCTCCTCATTGCTCCCATTCCAAGTCCAAATCCATCTCCTATCCCATTCGTCGATCCTGGAGCGAAGGCTGCTTGTCTCTCGTCCTTGCCTCTGCTTCCTCCTCCCCTTCCTCCTCCCCTGTCGTCGGTAAAATCACCTCTCAACCTGGTGCTGCTTTGAGCGAGGAGGATGACGACGACGCTCCTATTCTCTTTGCCAGGCCGAATTGAGAGTTCGATCCTTTCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCATGTTTTCGACAATTTTCCTGCCTTAGGATTTGAATAACTGTGAACCAGATGAGATGATTTGTTATACTTGTGATTTTTATTATCTTGAGTTTCTGTGA

mRNA sequence

ATGAGGCCTGCATCGGCTGCGACTCCGAAATCCACCGCCGTCCTTACCACCGCAACTGCGGCTGCGCTCTCCACAAATCTCGCCGTCAACCTCCTCATTGCTCCCATTCCAAGTCCAAATCCATCTCCTATCCCATTCGTCGATCCTGGAGCGAAGGCTGCTTGTCTCTCGTCCTTGCCTCTGCTTCCTCCTCCCCTTCCTCCTCCCCTGTCGTCGGATTTGAATAACTGTGAACCAGATGAGATGATTTGTTATACTTGTGATTTTTATTATCTTGAGTTTCTGTGA

Coding sequence (CDS)

ATGAGGCCTGCATCGGCTGCGACTCCGAAATCCACCGCCGTCCTTACCACCGCAACTGCGGCTGCGCTCTCCACAAATCTCGCCGTCAACCTCCTCATTGCTCCCATTCCAAGTCCAAATCCATCTCCTATCCCATTCGTCGATCCTGGAGCGAAGGCTGCTTGTCTCTCGTCCTTGCCTCTGCTTCCTCCTCCCCTTCCTCCTCCCCTGTCGTCGGATTTGAATAACTGTGAACCAGATGAGATGATTTGTTATACTTGTGATTTTTATTATCTTGAGTTTCTGTGA

Protein sequence

MRPASAATPKSTAVLTTATAAALSTNLAVNLLIAPIPSPNPSPIPFVDPGAKAACLSSLPLLPPPLPPPLSSDLNNCEPDEMICYTCDFYYLEFL*
Homology
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BLAST of Chy5G102970 vs. NCBI nr
Match: XP_004139269.3 (peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Cucumis sativus])

HSP 1 Score: 126 bits (316), Expect = 4.60e-32
Identity = 75/95 (78.95%), Postives = 79/95 (83.16%), Query Frame = 0 

Query: 1  MRPASAATPKSTAVLTTATAAALSTNLAVNLLIAPIPSPNPSPIPFVDPGAKAACLSSLP 60
          MRPASAATPKSTAVLTTATAAALSTNLAVNLLIAPIPSPNPSPIPFVDPGAKAACLSSLP
Sbjct: 1  MRPASAATPKSTAVLTTATAAALSTNLAVNLLIAPIPSPNPSPIPFVDPGAKAACLSSLP 60

Query: 61 LLPPPLPPPLSSDLNNCEPDEMIC---YTCDFYYL 92
          LLP  LPPPLSS      P  ++C   ++  FY L
Sbjct: 61 LLPLHLPPPLSSGKG---PIYVVCGHKFSTSFYLL 92

The following BLAST results are available for this feature:
BLAST of Chy5G102970 vs.
Match NameE-valueIdentityDescription
BLAST of Chy5G102970 vs.
Match NameE-valueIdentityDescription
BLAST of Chy5G102970 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139269.34.60e-3278.95peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Cucumis sativus][more]
BLAST of Chy5G102970 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy5G102970.1Chy5G102970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000413 protein peptidyl-prolyl isomerization
cellular_component GO:0110165 cellular anatomical entity
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity