Chy5G102940 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AACCGCGTTCTTCAGTTACAAAAAATGGATGATTCCAACGAACACAAAGGAAACTCCTCACCGTCCAGTCTGAAAGAGATGCTCAAATCTTCTCTATGTTTATCTTGTTGCCTTCGTAAGCACCGGAATGGCCATCATCATCTTCATCACCACCATCATCATCACCACCACCGGCGGATGTCTATTTCGTCCGACGGTGAATCGTCGCCTGGACCGCTCATGAGATGTTCTTCTGCAAAGGATAAATCCAGATCTCGTGAGTGTCATGATATTAAAGATCGACTTCCGAGTTTCATTTCCCGACTCGGTCGCCATGGACGTCGTCACTCTGCTTCCGCTGATTTCCATTACGATGCACTTAGTTATTCGCTTAATTTCGATGAAGGATATGATGAAGGTCATGTTGATGATGATTTTCCTCTCAGGAATTTCTCTTCTAGGTTACCGGCTTCTCCTCCGAAATCCTCACCGTCTACGACTACTGCATCGAGGGAGATGATCACGGCGTTTAGTTAATTTAATCCAATATATGAATCGAATCGTATTTATATGGAAGGCGCTTTGAGGTTTTAATTCGCGGCCGATCGTTAATAATTTTATCACGGCGAACGGATCGGTGTGGTTATACTTATGAACGATGAGGTTCACTGGAATTGAAGAGATCG AACCGCGTTCTTCAGTTACAAAAAATGGATGATTCCAACGAACACAAAGGAAACTCCTCACCGTCCAGTCTGAAAGAGATGCTCAAATCTTCTCTATGTTTATCTTGTTGCCTTCGTAAGCACCGGAATGGCCATCATCATCTTCATCACCACCATCATCATCACCACCACCGGCGGATGTCTATTTCGTCCGACGGTGAATCGTCGCCTGGACCGCTCATGAGATGTTCTTCTGCAAAGGATAAATCCAGATCTCGTGAGTGTCATGATATTAAAGATCGACTTCCGAGTTTCATTTCCCGACTCGGTCGCCATGGACGTCGTCACTCTGCTTCCGCTGATTTCCATTACGATGCACTTAGTTATTCGCTTAATTTCGATGAAGGATATGATGAAGGTCATGTTGATGATGATTTTCCTCTCAGGAATTTCTCTTCTAGGTTACCGGCTTCTCCTCCGAAATCCTCACCGTCTACGACTACTGCATCGAGGGAGATGATCACGGCGTTTAGTTAATTTAATCCAATATATGAATCGAATCGTATTTATATGGAAGGCGCTTTGAGGTTTTAATTCGCGGCCGATCGTTAATAATTTTATCACGGCGAACGGATCGAGATCG AACCGCGTTCTTCAGTTACAAAAAATGGATGATTCCAACGAACACAAAGGAAACTCCTCACCGTCCAGTCTGAAAGAGATGCTCAAATCTTCTCTATGTTTATCTTGTTGCCTTCGTAAGCACCGGAATGGCCATCATCATCTTCATCACCACCATCATCATCACCACCACCGGCGGATGTCTATTTCGTCCGACGGTGAATCGTCGCCTGGACCGCTCATGAGATGTTCTTCTGCAAAGGATAAATCCAGATCTCGTGAGTGTCATGATATTAAAGATCGACTTCCGAGTTTCATTTCCCGACTCGGTCGCCATGGACGTCGTCACTCTGCTTCCGCTGATTTCCATTACGATGCACTTAGTTATTCGCTTAATTTCGATGAAGGATATGATGAAGGTCATGTTGATGATGATTTTCCTCTCAGGAATTTCTCTTCTAGGTTACCGGCTTCTCCTCCGAAATCCTCACCGTCTACGACTACTGCATCGAGGGAGATGATCACGGCGTTTAGTTAATTTAATCCAATATATGAATCGAATCGTATTTATATGGAAGGCGCTTTGAGGTTTTAATTCGCGGCCGATCGTTAATAATTTTATCACGGCGAACGGATCGAGATCG NRVLQLQKMDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHHRRMSISSDGESSPGPLMRCSSAKDKSRSRECHDIKDRLPSFISRLGRHGRRHSASADFHYDALSYSLNFDEGYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS*FNPIYESNRIYMEGALRF*FAADR**FYHGERIEIX Homology
BLAST of Chy5G102940 vs. ExPASy TrEMBL
Match: A0A0A0LL60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009350 PE=4 SV=1) HSP 1 Score: 322.4 bits (825), Expect = 1.4e-84 Identity = 161/163 (98.77%), Postives = 161/163 (98.77%), Query Frame = 0
BLAST of Chy5G102940 vs. ExPASy TrEMBL
Match: A0A1S3CDF1 (uncharacterized protein LOC103499607 OS=Cucumis melo OX=3656 GN=LOC103499607 PE=4 SV=1) HSP 1 Score: 300.1 bits (767), Expect = 7.4e-78 Identity = 153/166 (92.17%), Postives = 159/166 (95.78%), Query Frame = 0
BLAST of Chy5G102940 vs. ExPASy TrEMBL
Match: A0A5D3BFQ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00930 PE=4 SV=1) HSP 1 Score: 298.9 bits (764), Expect = 1.6e-77 Identity = 152/166 (91.57%), Postives = 159/166 (95.78%), Query Frame = 0
BLAST of Chy5G102940 vs. ExPASy TrEMBL
Match: A0A6J1FDP2 (uncharacterized protein LOC111444439 OS=Cucurbita moschata OX=3662 GN=LOC111444439 PE=4 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 2.5e-57 Identity = 127/165 (76.97%), Postives = 136/165 (82.42%), Query Frame = 0
BLAST of Chy5G102940 vs. ExPASy TrEMBL
Match: A0A6J1HQB7 (uncharacterized protein LOC111465710 OS=Cucurbita maxima OX=3661 GN=LOC111465710 PE=4 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 1.0e-55 Identity = 125/165 (75.76%), Postives = 134/165 (81.21%), Query Frame = 0
BLAST of Chy5G102940 vs. NCBI nr
Match: XP_011650096.1 (NEDD8-specific protease 1 [Cucumis sativus]) HSP 1 Score: 323 bits (827), Expect = 2.12e-110 Identity = 161/163 (98.77%), Postives = 161/163 (98.77%), Query Frame = 0
BLAST of Chy5G102940 vs. NCBI nr
Match: XP_008460859.1 (PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo]) HSP 1 Score: 300 bits (768), Expect = 2.23e-101 Identity = 153/166 (92.17%), Postives = 159/166 (95.78%), Query Frame = 0
BLAST of Chy5G102940 vs. NCBI nr
Match: KAA0063552.1 (uncharacterized protein E6C27_scaffold329G00590 [Cucumis melo var. makuwa] >TYJ97879.1 uncharacterized protein E5676_scaffold285G00930 [Cucumis melo var. makuwa]) HSP 1 Score: 299 bits (765), Expect = 6.38e-101 Identity = 152/166 (91.57%), Postives = 159/166 (95.78%), Query Frame = 0
BLAST of Chy5G102940 vs. NCBI nr
Match: XP_038890730.1 (homeobox protein MOX-2 [Benincasa hispida]) HSP 1 Score: 286 bits (731), Expect = 8.11e-96 Identity = 148/163 (90.80%), Postives = 153/163 (93.87%), Query Frame = 0
BLAST of Chy5G102940 vs. NCBI nr
Match: KAG6586352.1 (hypothetical protein SDJN03_19085, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021198.1 hypothetical protein SDJN02_17886, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 233 bits (595), Expect = 4.22e-75 Identity = 128/165 (77.58%), Postives = 136/165 (82.42%), Query Frame = 0
BLAST of Chy5G102940 vs. TAIR 10
Match: AT5G35090.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 65.5 bits (158), Expect = 5.9e-11 Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 0
BLAST of Chy5G102940 vs. TAIR 10
Match: AT3G01430.1 (BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06 Identity = 29/61 (47.54%), Postives = 34/61 (55.74%), Query Frame = 0
BLAST of Chy5G102940 vs. TAIR 10
Match: AT5G14890.1 (NHL domain-containing protein ) HSP 1 Score: 48.9 bits (115), Expect = 5.7e-06 Identity = 30/76 (39.47%), Postives = 39/76 (51.32%), Query Frame = 0
BLAST of Chy5G102940 vs. TAIR 10
Match: AT5G62865.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1). ) HSP 1 Score: 44.7 bits (104), Expect = 1.1e-04 Identity = 36/89 (40.45%), Postives = 44/89 (49.44%), Query Frame = 0
BLAST of Chy5G102940 vs. TAIR 10
Match: AT5G11070.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 43.9 bits (102), Expect = 1.8e-04 Identity = 30/92 (32.61%), Postives = 44/92 (47.83%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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