Chy5G102730 (gene) Cucumber (hystrix) v1

Overview
NameChy5G102730
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH05: 16695074 .. 16699398 (-)
RNA-Seq ExpressionChy5G102730
SyntenyChy5G102730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTTCTGTATAGTAGCCAAGAAAAAAATGTGATATCTTATTCGTTAAAGGTATGTGAAGACCTTACGCTATGCATGTTTGAAGAGGAAAAAGGAAAATATTTGCTAAATAGTTGGATTGTATGAGGTGTGTATCTATCTTTTTACCTTTTATTTTTTGACTATGTTTGCGTTGAAAACTCTCACTTTAGTATGCGTGGTGATGTTTTAATGTTCATTTGAAAATGTAACTGACGATAATCTTTGTTGCTGAAACTGCCATCTTTCAAAGAAGCTGCATTAATCTTGATAGGTTATAGGGAAATTGTCAAAAATAGAAAAATTGACAAAATATTTACTATGAAAAATTAAGTGTAATAAATTTTGTTTTCTAGTGGTTTTTATGTAAATAGTTTGTTTTTTTTTTCTTTCATTTTTCATAGAAACTGCCATCCCTATTTAAACCTCGGTTTAGACACAGCAACGAACTTTCCCTTGATTTATCTTGGCAGTTATAGATAGGAGGGGTTTTTTTTCTTCGTTACTTTTGTTATTTTTCTTTTACTCCTCATTAACATAAGATAACTGAAAAAAACAAAACCACTATGCAAAATGAAGAATCCAAAAACACAAGGGAGGCTCTCAAAGCAGCTGGAAATAATCCTTGTGTTCTCTTTATGGGAGCAAAGCTGAGGATTTGAATAAATTTTTCCACCAAAATTTGGAGGCATTTTTAGGACTTTTAAGTCTATTCAGGAGGAGGAGTTGTGTTCTTTGGTAGCCCTTTTCTTTTGGGTACTTTATCTGCCTGGAAGGAGTGGGAGAGTGTTTTGATAGATGGCGGCTGGATCGTGGAAGGATGTGTGCAATTTAGTGTTGTTTAGTGCTTCTCTTTGGCTCTTAATTCATTTTTCTTTTGTAATATTTCATTACTTTTTGGCCATAACAAAGAACTTAGAGGGAATGAGTTTAATCCATAGACCTAGGATAATATATCAATGAGTTTTTCCGACACTCAAATGTTATAGAGTCAAATGAGTTGTCTTGTGAGATTAATGTTATAGAGTCAAATGAGCTGTCTTGTGAGATTAGTTGAGGTTGATGGTCTAGATATTCATAGATTTAAAAGGAAAAAAAATCATTGTTCTTGGTTACCACAAGTTGGGTTCAATTATTTTTTTTAACTGCATTCCCCCGGGGTTTGGCCTGGCACTTCTTTTTATGAGTCTTTCATGGCTTCTTGTTCTTTCACATTCTTAACCAAAGCTGATTTTCTATAAGTTACAAAAATTTAGGAAAACTTCCTGATGGTCACACCTACCCGAGAACTCTCATCCCATCTAAAAGATTCTTTTCTCTTACTAGGTATTCTATAGAATAGCCAGAACAATTACATTTGAACGGTAAGATCTTTTACAAGTTGAAAGTACACCAAAGGTCTTGAAAAAACTATCATATTTAAACATAAATTCTAACATGTCTCTCCAACCAGTGATCCAAATCCTAAGAACACTTGCATTAGACACACCATTTAATCCTTCCATAGGCAGATCGACCATAAAGTTTGAACTTCTTGAGATTTTAACCTTCCAAAGCAAGTGGAGAAAAGAGGACATGAGGGCCAATCCTAAGATCACACAAAAGAGACAAATAAAATCTACTATAGGATAGTGATCTAGATACCCAGATTTCTAGACTCGAAAAAAAAGGGAATCCTATGCAATTTCAAAAGAAACAAAGACATCAAATGCTTTTCTTCCGAACAAGGACGCCCAAAACTGAAGTTCTATGAAGTGGAATTCTTAGAGAAAGATAAGACAACTGCAAAAGTGGATATCCATAGAAGAAGAGAGATAAAAGATGAGAAAACCAAACAAAGGGAAATATTTACCCAACCAAAAATCTTTCCAAATACTAGTGTTGGTCCATCACAATTTCAAAAACTTCATAAACTTTGAAAAGCAAGGGAAAACAATGAGATTGGTCTTCCCAAGAATTTTGAAATTTCTTTAACCCCACGTGCTCAGATCCTCTCTCTCGCAACCAAGATGGGGATTTTATCTTACTTTTTGATAAATGTTAGAGCTTTTAGATTTCATCAAGTCTTCATTATGATTCATTCTGTAGGCTAATCAAAGCTTTTACTTTCCCGATGCATTTTGGCTGGCAGGACGAACCAGTATCATCATTAATTGTGAATTTATGGAACACAATTTAGGAAATTAACTGTTATTTTGCTATGCTTAGGCTAAAGCTTTGGATGTGCCGTTCCAGATTAAGACAAATGTTAAAGTCTTAACTCTGAAGGATATAATTGTCGTTGTTACTACTTGATAATTGAAAGAAACTTTAGGTCTTGAAATCATTTGTCTTCAATACCAAATATTGGTGTCAAAGAACTGGTGAAAGGGATATTTTACTCAAATAATTTGTTTTCCATATGTTCCCTATTTTCTTATTGACACTTTAGTTTTTGGGGGCAAGTTTGATATAACAGCACCTAAAAGTGCTTAAAGGAGGAGACATAGAAGCAATTGCCCACCTAACATAATTCAAGTGTTGAAGTATATATTCTCGACCGAAAGGTTGGGATTCGAATCTTCATGTTGGATTTTAGCGAAACATTAGAAGAGTAGTTCCTCGACATATGAAAAAGTCTTCAAAGACTTGATGAGCCCCAAATACTATAAAAGAAGCACTTGCCTTTCATTTCTAATCATCTCAACTTGAAACAGTTAATAACCGAGGAGAAATTTGTGTGACTGCAATAAATTTTAACAAAGAAGAAATTGTTTGGTATGTACTTTTTTCTCCAATGGGAGTTTTTTCACGTTAATTATCGTGTTTCTAGATTTATTGTTTGCTTGTTCCTATTGCTGCTGTAGTGGGAGATTTTTTTCCCCCAAAATATCACTCTCACTTAAAAAAGAAAAACTATAATGATACTCTCTCCCACCTTCATTTTGTACTTTCTTTGTCACCTCTTTTACTTGTTATGGAGTTATTTTTTTCTGACTATTCTGAGCTAAGTTTGTAGGAAACTCAACCATGAGTTATTAATACTATGTTATTAAATTATTGTTAGATTTGCAGGTAGTCCTAAATTTTTGGTTTGGTCTCTTTCTCTATGGGCAACAGTTTCAACCTACTCAGCCTAGTTGGCTTTTGAAAAGGTGAAACTTTTGACACAACCCTCCAAATTAGACTTTGGGGGCTAGTCACATTCCTATGCTCCCCAAAAGTTTTAGTGCCCATTATATCTAGCTTTGAAGTTATATATTCAAAAAAGTTGGCAAGTAAATTCAGTTGTTCTTGAGTTGGACCCACCTACTAATTTAAGTTCAACCAAACTCAAAAAAAACTTCAAAGATATATTATTGAGGCAACTTTAAGTTAAAGCAACGAAAATTCAAATATAAATATCCTTTCCTTCTTGATTGTATGCAATTACTTGTACTAATATGACACAACTAAGCTTGGGGAGGACGAATGAGTTTTGAAGGTCTCATAAAACACAACTGTAATCCTTTAAATTAGTGACAAGTAGTGATGACCTAAACATTGTCGTTTATCCGTTCGTTTGGTAGTTGTAACCCACCCAAATATTTGTTTTGACAAATTGTATTTATGTCCACAAATAGTATCACTCTTGCACATCACTAATAATTGAATTGAATTATGATCATTAAACATGTATTATATGTATAAAAAAGTTGACGACAAAAATTCCACGACTCTAAGACTTACGTCTAACTCAAGGTTTGACGAAAAAGAAAACACTTATTTGTTCGAATTTGGACTTTTATCTTATTCTAGAATACTTATTAAATCTCCCTCCCATTTCTTTTGAACATTTACTCAACCATTAAAGCTTAGTTGAAAATCTTAATACATCAAATTAAAGATAATATCAAAACACTTAGAAGAAGAAGAAAAGAAAAGATGGTGCATGTATTAAGGACAAAACTAACTTATATTTCTCTATTATATGAACTTACATCTATGTTAACTGCTAAGATTTATTATATTAATACTCCTTAATGAAATTAATCAATTGATTTTAAAATCAAAATTGATATATGATTAATTAGAAGAGAATAACCAAGACCCCAATTCATTCATTTTCGGGTTGATTTCAATTTAGTCCATATGAATTTAATGTTAATTATTTCCTAATGTAAACAAAAGAAAGAGGTAGTAAAAATTTCTAACAACATCCCTAATTAGGGTGACAAAGAAAATTCTCAAGTTTTTGTTTTTATTTATGTTTTAGAATATTACATTATTACAACATAGAAGGCAGGAATTTAAACTCACAAACTGTCTGGAAGAATAAAAAATAA

mRNA sequence

ATGGATTTTCTGTATAGTAGCCAAGAAAAAAATGTGATATCTTATTCGTTAAAGGTAGTCCTAAATTTTTGGTTTGGTCTCTTTCTCTATGGGCAACAGTTTCAACCTACTCAGCCTAGTTGGCTTTTGAAAAGAATATTACATTATTACAACATAGAAGGCAGGAATTTAAACTCACAAACTGTCTGGAAGAATAAAAAATAA

Coding sequence (CDS)

ATGGATTTTCTGTATAGTAGCCAAGAAAAAAATGTGATATCTTATTCGTTAAAGGTAGTCCTAAATTTTTGGTTTGGTCTCTTTCTCTATGGGCAACAGTTTCAACCTACTCAGCCTAGTTGGCTTTTGAAAAGAATATTACATTATTACAACATAGAAGGCAGGAATTTAAACTCACAAACTGTCTGGAAGAATAAAAAATAA

Protein sequence

MDFLYSSQEKNVISYSLKVVLNFWFGLFLYGQQFQPTQPSWLLKRILHYYNIEGRNLNSQTVWKNKK*
Homology
[Close]
BLAST of Chy5G102730 vs. NCBI nr
Match: KAE8651547.1 (hypothetical protein Csa_019485 [Cucumis sativus])

HSP 1 Score: 142 bits (357), Expect = 1.56e-42
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0 

Query: 1  MDFLYSSQEKNVISYSLKVVLNFWFGLFLYGQQFQPTQPSWLLKRILHYYNIEGRNLNSQ 60
          MDFLYSSQEKNVISYSLKVVLNFWFG FLYGQQFQPTQPSWLLKRILHYYNIEG+NLNSQ
Sbjct: 1  MDFLYSSQEKNVISYSLKVVLNFWFGPFLYGQQFQPTQPSWLLKRILHYYNIEGKNLNSQ 60

Query: 61 TVWKNKK 67
          TVWKNKK
Sbjct: 61 TVWKNKK 67

The following BLAST results are available for this feature:
BLAST of Chy5G102730 vs.
Match NameE-valueIdentityDescription
BLAST of Chy5G102730 vs.
Match NameE-valueIdentityDescription
BLAST of Chy5G102730 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651547.11.56e-4297.01hypothetical protein Csa_019485 [Cucumis sativus][more]
BLAST of Chy5G102730 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy5G102730.1Chy5G102730.1mRNA