Chy5G102640 (gene) Cucumber (hystrix) v1

Overview
NameChy5G102640
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPhosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1
LocationchrH05: 16592479 .. 16592754 (+)
RNA-Seq ExpressionChy5G102640
SyntenyChy5G102640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCCGCAAGGGTCTTGAATGGAGAGCGGTGGCTTCCAGGGTCAAGGGTTCCCTTCGCGATGCTACGAGGTCCCGTGCCTAGTTCAAGTAGGAACCCGTGTTCCTTTATTCCGGGGTTTAGTCGGGGCCGGTGTACGTTGAGCGAGGTGGACGAGGGTGCTGCCAGTGTTCGTGGTGGCTCCTCCGCGTTCCCGGGGTTGAATGCTGATGGATTTGCAGCGGCTTCTGTGGTTAATCAAACGCAGAAGCAAGATTCTTCTATGAGCTCTTGA

mRNA sequence

ATGTCGGCCGCAAGGGTCTTGAATGGAGAGCGGTGGCTTCCAGGGTCAAGGGTTCCCTTCGCGATGCTACGAGGTCCCGTGCCTAGTTCAAGTAGGAACCCGTGTTCCTTTATTCCGGGGTTTAGTCGGGGCCGGTGTACGTTGAGCGAGGTGGACGAGGGTGCTGCCAGTGTTCGTGGTGGCTCCTCCGCGTTCCCGGGGTTGAATGCTGATGGATTTGCAGCGGCTTCTGTGGTTAATCAAACGCAGAAGCAAGATTCTTCTATGAGCTCTTGA

Coding sequence (CDS)

ATGTCGGCCGCAAGGGTCTTGAATGGAGAGCGGTGGCTTCCAGGGTCAAGGGTTCCCTTCGCGATGCTACGAGGTCCCGTGCCTAGTTCAAGTAGGAACCCGTGTTCCTTTATTCCGGGGTTTAGTCGGGGCCGGTGTACGTTGAGCGAGGTGGACGAGGGTGCTGCCAGTGTTCGTGGTGGCTCCTCCGCGTTCCCGGGGTTGAATGCTGATGGATTTGCAGCGGCTTCTGTGGTTAATCAAACGCAGAAGCAAGATTCTTCTATGAGCTCTTGA

Protein sequence

MSAARVLNGERWLPGSRVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGAASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS*
Homology
BLAST of Chy5G102640 vs. ExPASy TrEMBL
Match: A0A0A0LJ84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.2e-41
Identity = 89/91 (97.80%), Postives = 89/91 (97.80%), Query Frame = 0

Query: 1   MSAARVLNGERWLPGSRVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGAASVRG 60
           MSAARVLNGERWLPGS VPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEG ASVRG
Sbjct: 21  MSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGDASVRG 80

Query: 61  GSSAFPGLNADGFAAASVVNQTQKQDSSMSS 92
           GSSAFPGLNADGFAAASVVNQTQKQDSSMSS
Sbjct: 81  GSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

BLAST of Chy5G102640 vs. ExPASy TrEMBL
Match: A0A5A7VCY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001240 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.9e-34
Identity = 75/81 (92.59%), Postives = 79/81 (97.53%), Query Frame = 0

Query: 11  RWLPGSRVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGAASVRGGSSAFPGLNA 70
           RWLPGSRVP A+LRGPVPSSSRNPCSFIPGFSRGRCTLSEVD+GAASV GGSSAFPGLNA
Sbjct: 25  RWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDDGAASVHGGSSAFPGLNA 84

Query: 71  DGFAAASVVNQTQKQDSSMSS 92
           DGFAAAS+VNQTQKQDSS+SS
Sbjct: 85  DGFAAASMVNQTQKQDSSLSS 105

BLAST of Chy5G102640 vs. ExPASy TrEMBL
Match: A0A6A4KR04 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_20131 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-07
Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 0

Query: 3   AARVLNGERWLPGSRVPF--AMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGAASVRG 62
           A R L GE WL   +     ++ RGPV  S  NPC++IPG  RGRCTL+E +   +   G
Sbjct: 24  ATRPLEGEEWLNNLKTLAIQSLQRGPVTPSGSNPCTYIPGGKRGRCTLAENESNYSGRVG 83

Query: 63  GSS--AFPGLNADGFAAASVVNQTQKQDSS 89
            ++  AFPG+    FA AS  N ++KQD S
Sbjct: 84  HAAPPAFPGVMVK-FAPASTANDSRKQDGS 112

BLAST of Chy5G102640 vs. ExPASy TrEMBL
Match: A0A0B2RDN7 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_008165 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.7e-07
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 5  RVLNGERWLPGSRVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVD 53
          R L GE+WL  + V  ++ RGPV SS RNPCS +PG SRGRCTL E++
Sbjct: 27 RTLEGEQWLHNNLVLHSLQRGPVRSSQRNPCSTVPGRSRGRCTLGEIN 74

BLAST of Chy5G102640 vs. ExPASy TrEMBL
Match: I1JRQ4 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G248900 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.7e-07
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 5  RVLNGERWLPGSRVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVD 53
          R L GE+WL  + V  ++ RGPV SS RNPCS +PG SRGRCTL E++
Sbjct: 27 RTLEGEQWLHNNLVLHSLQRGPVRSSQRNPCSTVPGRSRGRCTLGEIN 74

BLAST of Chy5G102640 vs. NCBI nr
Match: KGN60782.1 (hypothetical protein Csa_019261 [Cucumis sativus])

HSP 1 Score: 175 bits (443), Expect = 1.20e-54
Identity = 89/91 (97.80%), Postives = 89/91 (97.80%), Query Frame = 0

Query: 1   MSAARVLNGERWLPGSRVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGAASVRG 60
           MSAARVLNGERWLPGS VPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEG ASVRG
Sbjct: 21  MSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGDASVRG 80

Query: 61  GSSAFPGLNADGFAAASVVNQTQKQDSSMSS 91
           GSSAFPGLNADGFAAASVVNQTQKQDSSMSS
Sbjct: 81  GSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

BLAST of Chy5G102640 vs. NCBI nr
Match: KAA0063581.1 (hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ97908.1 hypothetical protein E5676_scaffold285G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 151 bits (382), Expect = 2.00e-45
Identity = 75/81 (92.59%), Postives = 79/81 (97.53%), Query Frame = 0

Query: 11  RWLPGSRVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGAASVRGGSSAFPGLNA 70
           RWLPGSRVP A+LRGPVPSSSRNPCSFIPGFSRGRCTLSEVD+GAASV GGSSAFPGLNA
Sbjct: 25  RWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDDGAASVHGGSSAFPGLNA 84

Query: 71  DGFAAASVVNQTQKQDSSMSS 91
           DGFAAAS+VNQTQKQDSS+SS
Sbjct: 85  DGFAAASMVNQTQKQDSSLSS 105

BLAST of Chy5G102640 vs. NCBI nr
Match: KAG6599331.1 (hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144 bits (364), Expect = 7.27e-43
Identity = 71/89 (79.78%), Postives = 78/89 (87.64%), Query Frame = 0

Query: 1  MSAARVLNGERWLPGSRVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGAASVRG 60
          MSAARV+ GERWLP  RVP AMLRG VPSSSRNPCSFIPGFSRGRCTLSE D+GAA+V G
Sbjct: 1  MSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVHG 60

Query: 61 GSSAFPGLNADGFAAASVVNQTQKQDSSM 89
          GSSA  GLNADGFAAAS+ N+TQK+D S+
Sbjct: 61 GSSALSGLNADGFAAASMANKTQKKDPSL 89

BLAST of Chy5G102640 vs. NCBI nr
Match: KAG6586324.1 (hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110 bits (275), Expect = 4.91e-29
Identity = 60/91 (65.93%), Postives = 68/91 (74.73%), Query Frame = 0

Query: 1   MSAARVLNGERWLPGSRVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDE--GAASV 60
           +SAARVL GERW P S     MLRG VP S RNPCSFIPG  RGRCTLSEV++  G    
Sbjct: 23  VSAARVLTGERWRPVSD---RMLRGLVPPSGRNPCSFIPGLGRGRCTLSEVEDEAGGGGG 82

Query: 61  RGGSSAFPGLNADGFAAASVVNQTQKQDSSM 89
            GGSSAFPG+N DGF+AA++VN TQKQD S+
Sbjct: 83  GGGSSAFPGMNFDGFSAAAMVNGTQKQDPSL 110

BLAST of Chy5G102640 vs. NCBI nr
Match: XP_021888699.1 (uncharacterized protein LOC110807772 [Carica papaya])

HSP 1 Score: 78.2 bits (191), Expect = 3.60e-16
Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = 0

Query: 2   SAARVLNGERWLPGSRVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGAASVRGG 61
           +A R+L+ E+WL  + +  ++ RGPVP S  NPC+FIPG +RGRCTLSE+D      R  
Sbjct: 32  AAVRLLDEEQWLAKNLIVQSLQRGPVPPSGGNPCTFIPGRNRGRCTLSEMDVAGQFPRAP 91

Query: 62  SSAFPGLNADGFAAASV----VNQTQKQDSS 88
           ++AFP +  D F A +      N+TQKQDSS
Sbjct: 92  AAAFPDIVVD-FGAVTAGNSGANETQKQDSS 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJ844.2e-4197.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1[more]
A0A5A7VCY24.9e-3492.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6A4KR043.9e-0743.33Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
A0A0B2RDN76.7e-0758.33Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_008165 PE=4 SV=1[more]
I1JRQ46.7e-0758.33Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G248900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN60782.11.20e-5497.80hypothetical protein Csa_019261 [Cucumis sativus][more]
KAA0063581.12.00e-4592.59hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ9790... [more]
KAG6599331.17.27e-4379.78hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6586324.14.91e-2965.93hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_021888699.13.60e-1647.25uncharacterized protein LOC110807772 [Carica papaya][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592:SF6SUBFAMILY NOT NAMEDcoord: 1..87
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy5G102640.1Chy5G102640.1mRNA