Chy5G099300 (gene) Cucumber (hystrix) v1

Overview


Name	Chy5G099300
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	40S ribosomal protein S2
Location	chrH05: 13105941 .. 13106605 (-)
RNA-Seq Expression	Chy5G099300
Synteny	Chy5G099300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTAGGGTTCCCAAGAAGGTGCTTCAATTCACTGGTATTGAGGATGTTTCCATTTCCTCAAGGGTATCCACTAAGGCGCTTGGAAACTTTGTGAAGGTATATTGTAATATGATGCAATATCAATATCCTATGTCCACTGAAATTTATATGGTGTCTGTTATCAGTATAATGTGTTGTGTTATGTCATTTGGGGCATTCTGAATTCAGATTTGTACTTAGGCTCGGCTTGTAAAATTTTGAATAGCAGTCTATTTGTGGTTGATTATGCAAATTGGGCTGTGTTTCTTCTGGATTTTTCTGTTTGTGTGTGCATCCATTTTGTGGAATTGATTTATGTTTTGATTTTTGGAACATGGAACCTCCATTCCTATGATCTGTAGAATAAAAAGACTAATCTTGCCTTGTATGTCAATTATGTTGCATTTTCTATACGATATTAAAAATGCTTTAAGATCTTTTAATTTGAGTATGTATGTGTAGGTGGACTCTTACTAATATGTATAAATCACTAATGTCATGCTTTCAAAAATCTGAATTTGATTTTGATCTGAAACCTGTTGTTTGTTTACTATCCATTGCAGGCATTCGGATTTGAAGGTGATGTTCGTAAGAAGACGCAAGTAGTGTAG

mRNA sequence

ATGGTTCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTAGGGTTCCCAAGAAGGTGCTTCAATTCACTGGTATTGAGGATGTTTCCATTTCCTCAAGGGTATCCACTAAGGCGCTTGGAAACTTTGTGAAGGCATTCGGATTTGAAGGTGATGTTCGTAAGAAGACGCAAGTAGTGTAG

Coding sequence (CDS)

ATGGTTCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTAGGGTTCCCAAGAAGGTGCTTCAATTCACTGGTATTGAGGATGTTTCCATTTCCTCAAGGGTATCCACTAAGGCGCTTGGAAACTTTGTGAAGGCATTCGGATTTGAAGGTGATGTTCGTAAGAAGACGCAAGTAGTGTAG

Protein sequence

MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKAFGFEGDVRKKTQVV*

Homology

[Close]

BLAST of Chy5G099300 vs. ExPASy Swiss-Prot
Match: Q8L8Y0 (40S ribosomal protein S2-1 OS=Arabidopsis thaliana OX=3702 GN=RPS2A PE=2 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 3.9e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKA 46
           MVPAPRG+GIVAARVPKKVLQF GI+DV  SSR STK LGNFVKA
Sbjct: 188 MVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 232

[Close]

BLAST of Chy5G099300 vs. ExPASy Swiss-Prot
Match: Q93VB8 (40S ribosomal protein S2-2 OS=Arabidopsis thaliana OX=3702 GN=RPS2B PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.9e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKA 46
           MVPAPRG+GIVAARVPKKVLQF GI+DV  SSR STK LGNFVKA
Sbjct: 188 MVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 232

[Close]

BLAST of Chy5G099300 vs. ExPASy Swiss-Prot
Match: P49688 (40S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 3.9e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKA 46
           MVPAPRG+GIVAARVPKKVLQF GI+DV  SSR STK LGNFVKA
Sbjct: 189 MVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 233

[Close]

BLAST of Chy5G099300 vs. ExPASy Swiss-Prot
Match: Q9SCM3 (40S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.9e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKA 46
           MVPAPRG+GIVAARVPKKVLQF GI+DV  SSR STK LGNFVKA
Sbjct: 180 MVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 224

[Close]

BLAST of Chy5G099300 vs. ExPASy Swiss-Prot
Match: P27685 (40S ribosomal protein S2 OS=Dictyostelium discoideum OX=44689 GN=rps2 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.1e-10
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1   MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKAFGF 49
           +VPAPRG GIVAARVPKK+LQ+ G++DV  SSR  T+ +GNFV A  F
Sbjct: 182 LVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRTMGNFVMATFF 229

[Close]

BLAST of Chy5G099300 vs. ExPASy TrEMBL
Match: A0A0E0Q5G9 (S5 DRBM domain-containing protein OS=Oryza rufipogon OX=4529 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.5e-12
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1   MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKAFGF 49
           MVPAPRG+GIVAARVPKKVLQF GIEDV  SSR STK LGNFVK +GF
Sbjct: 89  MVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKTYGF 136

[Close]

BLAST of Chy5G099300 vs. ExPASy TrEMBL
Match: A0A5N6NA28 (S5 DRBM domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_22292 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.7e-12
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1   MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKAFGF 49
           +VPAPRGAGIVAARVPKKVLQF GI+DV  SSR STK LGNFVK +GF
Sbjct: 176 LVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKTYGF 223

[Close]

BLAST of Chy5G099300 vs. ExPASy TrEMBL
Match: A0A7J8PJW7 (S5 DRBM domain-containing protein OS=Gossypium raimondii OX=29730 GN=Gorai_017897 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-11
Identity = 40/48 (83.33%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKAFGF 49
           MVPAPRGAGIVAARVPKKVLQF GIEDV  SSR STK LGNFVK   F
Sbjct: 174 MVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKVLNF 221

[Close]

BLAST of Chy5G099300 vs. ExPASy TrEMBL
Match: A0A7J9LMC6 (S5 DRBM domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_012677 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-11
Identity = 40/48 (83.33%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKAFGF 49
           MVPAPRGAGIVAARVPKKVLQF GIEDV  SSR STK LGNFVK   F
Sbjct: 174 MVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKVLNF 221

[Close]

BLAST of Chy5G099300 vs. ExPASy TrEMBL
Match: A0A7J8RSV7 (S5 DRBM domain-containing protein OS=Gossypium davidsonii OX=34287 GN=Godav_026388 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-11
Identity = 40/48 (83.33%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKAFGF 49
           MVPAPRGAGIVAARVPKKVLQF GIEDV  SSR STK LGNFVK   F
Sbjct: 174 MVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKVLNF 221

[Close]

BLAST of Chy5G099300 vs. NCBI nr
Match: KRX86104.1 (40S ribosomal protein S2-2, partial [Trichinella patagoniensis])

HSP 1 Score: 77.4 bits (189), Expect = 4.49e-17
Identity = 40/45 (88.89%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKA 45
          MVPAPRGAGIVAARVPKKVLQF GIEDV  SSR STK LGNFVKA
Sbjct: 1  MVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKA 45

[Close]

BLAST of Chy5G099300 vs. NCBI nr
Match: MBA0761563.1 (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 76.6 bits (187), Expect = 7.44e-17
Identity = 40/48 (83.33%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1  MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKAFGF 48
          MVPAPRGAGIVAARVPKKVLQF GIEDV  SSR STK LGNFVK   F
Sbjct: 1  MVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKVSTF 48

[Close]

BLAST of Chy5G099300 vs. NCBI nr
Match: MBL2056904.1 (30S ribosomal protein S5 [Klebsiella pneumoniae])

HSP 1 Score: 77.4 bits (189), Expect = 9.61e-17
Identity = 40/45 (88.89%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKA 45
          MVPAPRGAGIVAARVPKKVLQF GIEDV  SSR STK LGNFVKA
Sbjct: 48 MVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKA 92

[Close]

BLAST of Chy5G099300 vs. NCBI nr
Match: CBI29855.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 77.4 bits (189), Expect = 1.04e-16
Identity = 40/45 (88.89%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKA 45
          MVPAPRGAGIVAARVPKKVLQF GIEDV  SSR STK LGNFVKA
Sbjct: 1  MVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKA 45

[Close]

BLAST of Chy5G099300 vs. NCBI nr
Match: XP_030445906.1 (40S ribosomal protein S2-4-like [Syzygium oleosum])

HSP 1 Score: 77.4 bits (189), Expect = 1.07e-16
Identity = 40/45 (88.89%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKA 45
          MVPAPRGAGIVAARVPKKVLQF GIEDV  SSR STK LGNFVKA
Sbjct: 1  MVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKA 45

[Close]

BLAST of Chy5G099300 vs. TAIR 10
Match: AT1G58983.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-14
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKA 46
           MVPAPRG+GIVAARVPKKVLQF GI+DV  SSR STK LGNFVKA
Sbjct: 188 MVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 232

[Close]

BLAST of Chy5G099300 vs. TAIR 10
Match: AT1G59359.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-14
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKA 46
           MVPAPRG+GIVAARVPKKVLQF GI+DV  SSR STK LGNFVKA
Sbjct: 188 MVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 232

[Close]

BLAST of Chy5G099300 vs. TAIR 10
Match: AT1G58380.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-14
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKA 46
           MVPAPRG+GIVAARVPKKVLQF GI+DV  SSR STK LGNFVKA
Sbjct: 188 MVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 232

[Close]

BLAST of Chy5G099300 vs. TAIR 10
Match: AT1G58684.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-14
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKA 46
           MVPAPRG+GIVAARVPKKVLQF GI+DV  SSR STK LGNFVKA
Sbjct: 188 MVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 232

[Close]

BLAST of Chy5G099300 vs. TAIR 10
Match: AT2G41840.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-14
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   MVPAPRGAGIVAARVPKKVLQFTGIEDVSISSRVSTKALGNFVKA 46
           MVPAPRG+GIVAARVPKKVLQF GI+DV  SSR STK LGNFVKA
Sbjct: 189 MVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 233

The following BLAST results are available for this feature:

BLAST of Chy5G099300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L8Y0	3.9e-13	84.44	40S ribosomal protein S2-1 OS=Arabidopsis thaliana OX=3702 GN=RPS2A PE=2 SV=2	[more]
Q93VB8	3.9e-13	84.44	40S ribosomal protein S2-2 OS=Arabidopsis thaliana OX=3702 GN=RPS2B PE=2 SV=1	[more]
P49688	3.9e-13	84.44	40S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2	[more]
Q9SCM3	3.9e-13	84.44	40S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1	[more]
P27685	3.1e-10	64.58	40S ribosomal protein S2 OS=Dictyostelium discoideum OX=44689 GN=rps2 PE=1 SV=1	[more]

BLAST of Chy5G099300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0E0Q5G9	3.5e-12	83.33	S5 DRBM domain-containing protein OS=Oryza rufipogon OX=4529 PE=3 SV=1	[more]
A0A5N6NA28	7.7e-12	81.25	S5 DRBM domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_22292 ...	[more]
A0A7J8PJW7	1.7e-11	83.33	S5 DRBM domain-containing protein OS=Gossypium raimondii OX=29730 GN=Gorai_01789...	[more]
A0A7J9LMC6	1.7e-11	83.33	S5 DRBM domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_0...	[more]
A0A7J8RSV7	1.7e-11	83.33	S5 DRBM domain-containing protein OS=Gossypium davidsonii OX=34287 GN=Godav_0263...	[more]

BLAST of Chy5G099300 vs. NCBI nr


Match Name	E-value	Identity	Description
KRX86104.1	4.49e-17	88.89	40S ribosomal protein S2-2, partial [Trichinella patagoniensis]	[more]
MBA0761563.1	7.44e-17	83.33	hypothetical protein [Gossypium trilobum]	[more]
MBL2056904.1	9.61e-17	88.89	30S ribosomal protein S5 [Klebsiella pneumoniae]	[more]
CBI29855.3	1.04e-16	88.89	unnamed protein product, partial [Vitis vinifera]	[more]
XP_030445906.1	1.07e-16	88.89	40S ribosomal protein S2-4-like [Syzygium oleosum]	[more]

BLAST of Chy5G099300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G58983.1	2.8e-14	84.44	Ribosomal protein S5 family protein	[more]
AT1G59359.1	2.8e-14	84.44	Ribosomal protein S5 family protein	[more]
AT1G58380.1	2.8e-14	84.44	Ribosomal protein S5 family protein	[more]
AT1G58684.1	2.8e-14	84.44	Ribosomal protein S5 family protein	[more]
AT2G41840.1	2.8e-14	84.44	Ribosomal protein S5 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 1..46 e-value: 2.5E-12 score: 46.0
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 1..56 e-value: 2.3E-16 score: 61.6
None	No IPR available	PANTHER	PTHR13718:SF88	40S RIBOSOMAL PROTEIN S2-1	coord: 1..46
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 1..46
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy5G099300.1	Chy5G099300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome