Chy5G098710 (gene) Cucumber (hystrix) v1

Overview


Name	Chy5G098710
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH05: 11842963 .. 11845767 (-)
RNA-Seq Expression	Chy5G098710
Synteny	Chy5G098710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATTCGTGGTGGAGTTGGCGGTGAACGATGCACATTTGCGGCTTTATTCCGGTGGTGATTGACGTCGAGTAGAAGTTTTTTCCAAGCATTGTTGCTGCGTTTCTACGGGTCATTCAGCGTTGGGTTTTAACTGGGTTCTCTTCAGTATTGGGTTTTCTACGAGTTTGGGTCTAAATATTAGAGGTTTCAGTGTGGGTCTCTCGGTCCTTCTTGGCATTTGGTTGACAGTATAGTCGGGTTTGTCTTGGTTGATGAGAGATTGCTAATTATTGTTGAACTCTGTAATTGTATCCTATTTTTGCTCTTAATAAAATCCCTCCAAACTGTTTCTCAAAGTGGATGTAGACCGAATTGGTCGAACCACTATATATCGTTGTATCACTTATTATCGCTTTATTTGATTATCTGGCTACTGAGTTCTTGTTTAGATTGTGTTCTCTGATTAGTGCATAAAACTATATCAAGTGGTTGGGAGTTTGGTATAGTCATAACAAATGGTAATAGAACTTGGGTGTGTTATTCCTAACAAGTGGTATCTTCATTCGATCTAAAAGAAGATTTTGGTTTGGTGTGGTAGTTTGCAGTTTACATATTTTTGGTTTAATCAGTTCTGTAAAGATGACTTCAACATGGTTTGGGGTGGCTAAGTTTGACGGGATGAATGATTTTTCTCTTTGGAAAAAAAAGATTAGAGCTATTTTAGTTCAACAAAAAGTAGTTAAAATCTTAGAGGAAGAGAACCTTCCAGAAACTATTACAGAAAGTGAGAAAAAGGATACGGATGAAATGGCCTATTCAACGATCCTTCTGTATCTGTCAGATGATGTGCTTAGACTTGTAGATGAGGCTACTACTACAGGAGAGTTGTGGAAGAAGTTAGAAAGTCTTTACTTGACAAAGTCATTGCCAAATAAATTATTTCTAAAGGAGAAATTTTTTTGGATATAAGATGGACCAAAGTAAAGGCTTAGAAGAGAACTTGAATGAATTTCAGAAGATTATAGTTGATCTCAATAACATGGATGAGAAGATGTCATATGAGAATCAAGCAGTGATTCTTTTAAACTCGTTACCTGAAACATATCGAGAGGTTAAGGCATCTATTAAATACGGTAGAGATTCTTTGACCATGAGTGTAGTGTTGGATGCCTTAAAGACTAGAAATCTAAAAATTAAGAAAGAACGCATGGATAGAGAGTTACTCATGGCCAGAGTAAGAATTGACAAAAAGAACTGGAAAGGAAAAGAGAAGAGTTCCAGGATGAATTCAAAGGGGAAGCTAGAAAGTGTTTCCTTTATCATAAAGAAGGACATTTTAAGAAACATTGCCCTTTGAATAAGAGCAAGGTTGAGACCAGTGCAACAAATGTTACTGAAGGGTATGATTTTGATTCAATAAAGGTCTTGATGGTGTCTCATAGGCATATGCAAGATGCTTGGATCATGGATTCAGGGTGCATGTATCACATGACTTCTAATCGAAATTTTTTTATTGACTTTCAGAAAAATGATGGGGGACAAGTCTTAATGGGTGATAGCGATACTTGTGATATCAAGGGAACTGGGTCAGTTAAAATTACAACACATGACGAGATGATATGAAAGCTCACAAATGTGAGGTATGTTCCAGAACTCAAATGTAATCTAATATCTCTTGGTGAACTAGATAGATTAGGTTATGTTTTTAAATCTGAAAACGGAGTTTTGAAAGTTATCAAGGGTTCTTTGATTAAACTGAGGGAAACTTTGAGGAATGGTCTGTATGTGTTGGAAGGTACTGCAGTTTCAGGTAGTGTTGCTACAACATCAAAGCAGACAGTTGATCATGTTGTGACAGAGGTCAGAATTGATTCTGGAGTACGACTAGCAAGGAAAAGTTCAGATGTATCTAGTGAACAGTCACCACTAGTTTCACAAACATCGGCTATATATGAGTCTGAATTTGATGTTGTACAGTCTAAACAAGAGAGGACTTTGATTGATGAGGGAGTTTTCAGTGACGATATTATATCTAATTCGAAGAAACAATGGAATGATGCTATGGAAGCATAGTTGTTTTCTTTGAGAAGGAATCAGACATGGTCATTGGTTCCAAAGCCTCCTATTAAGAAACTCATTCAAACAAAGTGGATTAAGCCAGGAGGTGACAGTAAACCTAGGTATAAGGCTAGGTTGGTTGCCAAGGTTCTTCCATCTCATAGGTTTAAGTACTGGTTAGATGAGCTCAAGGTTAATTCTGGATGATAGGGTGATTAGGAGAATCAGTTTGGTGTCTTAAATAGCTTATCATGAGGGAGATTTGTAGAAAAATGACAAGTATTTAAGAGTTAGTAAAATGAGTTTTAAGTTAAGGGTAAAGTGGTAATTTGTCTTTATGAAAAATTTGTAATTATTCCCACCTTCTACCTTAGATCTTTTAATAAGACAAAAGAAAAGAGGGAAAAGTAAGATAGCAGCCGATAGTCACACTAAGGAAGAGGGGGTGGAAGACAGAGGCGTTCGACGGAGCATTGACGTCAGAGTTTCTGCATGCTATTGACGATGAACGACGTTCATGGTGAAGCTGGCAGTGAACGACGCATGTTTACGGATTTATTCCGGTGTTGATCGGCGTCGGGTAAAAGGTTTTTTCGGGCATTGCTGCTACTTTTCTACGGGTCATTCAACATTAGGTTTCGACCGAGTTCGCTTCAGTATTGGGCTTTCTACAAGTTTAGGTCTCGGTATCAGAGGTTTCAGTGTGGGTCTCTCAGTCCTTCTTGGCATTGGGTTGACGGTATAGTCGGGTTTGTCTTGGTTGA

mRNA sequence

ATGACATTCGTGGTGGAGTTGGCGGTGAACGATGCACATTTGCGGCTTTATTCCGGTGGTGATTGACGTCGAGTAGAAGTTTTTTCCAAGCATTGTTGCTGCGTTTCTACGGGTCATTCAGCGTTGGGTTTTAACTGGGTTCTCTTCAGTATTGGGTTTTCTACGAGTTTGGGTCTAAATATTAGAGGTTTCAGTGTGGGTCTCTCGTCCTTCTTGGCATTGGGTTGACGGTATAGTCGGGTTTGTCTTGGTTGA

Coding sequence (CDS)

ATGACATTCGTGGTGGAGTTGGCGGTGAACGATGCACATTTGCGGCTTTATTCCGGTGGTGATTGACGTCGAGTAGAAGTTTTTTCCAAGCATTGTTGCTGCGTTTCTACGGGTCATTCAGCGTTGGGTTTTAACTGGGTTCTCTTCAGTATTGGGTTTTCTACGAGTTTGGGTCTAAATATTAGAGGTTTCAGTGTGGGTCTCTCGTCCTTCTTGGCATTGGGTTGACGGTATAGTCGGGTTTGTCTTGGTTGA

Protein sequence

MTFVVELAVNDAHLRLYSGGD*RRVEVFSKHCCCVSTGHSALGFNWVLFSIGFSTSLGLNIRGFSVGLSSFLALG*RYSRVCLG*

Homology

[Close]

BLAST of Chy5G098710 vs. ExPASy TrEMBL
Match: A0A0A0KYF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G430870 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.2e-28
Identity = 67/84 (79.76%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 1  MTFVVELAVNDAHLRLYSGGD*RRVEVFSKHCCCVSTGHSALGFNWVLFSIGFSTSLGLN 60
          MTFVVELAVNDA LRLYSGGD RRVE F +HC CVST HS LGF+ V FSIGFST L L 
Sbjct: 1  MTFVVELAVNDARLRLYSGGDRRRVEAFFRHCFCVSTSHSTLGFDRVCFSIGFSTGLDLG 60

Query: 61 IRGFSVGLSSFLALG*RYSRVCLG 85
          IRGFSVGLSSFLA G RYSR CLG
Sbjct: 61 IRGFSVGLSSFLAFGWRYSRACLG 84

[Close]

BLAST of Chy5G098710 vs. NCBI nr
Match: KGN54705.1 (hypothetical protein Csa_012086 [Cucumis sativus])

HSP 1 Score: 132 bits (333), Expect = 2.37e-38
Identity = 67/84 (79.76%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 1  MTFVVELAVNDAHLRLYSGGD*RRVEVFSKHCCCVSTGHSALGFNWVLFSIGFSTSLGLN 60
          MTFVVELAVNDA LRLYSGGD RRVE F +HC CVST HS LGF+ V FSIGFST L L 
Sbjct: 1  MTFVVELAVNDARLRLYSGGDRRRVEAFFRHCFCVSTSHSTLGFDRVCFSIGFSTGLDLG 60

Query: 61 IRGFSVGLSSFLALG*RYSRVCLG 84
          IRGFSVGLSSFLA G RYSR CLG
Sbjct: 61 IRGFSVGLSSFLAFGWRYSRACLG 84

The following BLAST results are available for this feature:

BLAST of Chy5G098710 vs.


Match Name	E-value	Identity	Description

BLAST of Chy5G098710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYF5	2.2e-28	79.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G430870 PE=4 SV=1	[more]

BLAST of Chy5G098710 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54705.1	2.37e-38	79.76	hypothetical protein Csa_012086 [Cucumis sativus]	[more]

BLAST of Chy5G098710 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy5G098710.1	Chy5G098710.1	mRNA