Chy5G095830 (gene) Cucumber (hystrix) v1

Overview
NameChy5G095830
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description60S ribosomal export protein NMD3
LocationchrH05: 5760875 .. 5761592 (+)
RNA-Seq ExpressionChy5G095830
SyntenyChy5G095830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAACCATAAAACAGAAACCGCTGCGCATTCAGCTGCCGCAGTCTCAGCCTTCCGAAGAGATATCTGCCGCACCTTCCTCCCACTCTCTCTCCGAGCAATCAGAACACGGTGGTTCATCCCTTAACTCGTTGCTGCCGTGGTTCATTATAGTTTTTTCTTGTTGATTTCTTATTCAATCAAGGTTCAACGATTCTTTTTAATGGAAACATAAAACTAATAATGTAGACCTCACAAATTAGGAAAAACGGAAACCAGATTAAATCAATAAAAATTATTTTATCTGAGCTGAGATTTCAAAAATTCGCCTCCTTGTGGCGAGCTTACAGCCCCAAGTTTAAATTTTAGCCTAGATTTTTTTTCGTTCACCTTTTCTGAAAAAGCTTTAGAATTCAACTTCTAGTGTTGGTTTGTTCATCTTTAGTATAAACTATGGCTGGAGAAGAAGTATTGTTTATGATTCAGCAGACCAGTTGCAGTGTCTTATGTTGCAAATGTGGAATTCCCATTGCACCAAATGCTGCCAATATGTGTGTCAAGTGCTTGGTGTTCTGAAGTTGATATCACTGAAGGTTTGCAGAAGCAATTATGAATTAAGTATTATTCATTTTCCTCATTGTGAGAGTTACTTGCAGCCACCTCGAATTTGGATTAAAGCACAATTAGAATCAAAAGAACTATTAACACTGTATCAAAAGGTTAAAGAATCTGAGTAA

mRNA sequence

ATGAGAAACCATAAAACAGAAACCGCTGCGCATTCAGCTGCCGCAGTCTCAGCCTTCCGAAGAGATATCTGCCGCACCTTCCTCCCACTCTCTCTCCGAGCAATCAGAACACGTATAAACTATGGCTGGAGAAGAAGTATTGTTTATGATTCAGCAGACCAGTTGCAGTGTCTTATGTTGCAAATGTGGAATTCCCATTGCACCAAATGCTGCCAATATGTGTGTCAAGTGCTTGGTGTTCTGAAGTTGATATCACTGAAGGTTTGCAGAAGCAATTATGAATTAAGTATTATTCATTTTCCTCATTGTGAGAGTTACTTGCAGCCACCTCGAATTTGGATTAAAGCACAATTAGAATCAAAAGAACTATTAACACTGTATCAAAAGGTTAAAGAATCTGAGTAA

Coding sequence (CDS)

ATGAGAAACCATAAAACAGAAACCGCTGCGCATTCAGCTGCCGCAGTCTCAGCCTTCCGAAGAGATATCTGCCGCACCTTCCTCCCACTCTCTCTCCGAGCAATCAGAACACGTATAAACTATGGCTGGAGAAGAAGTATTGTTTATGATTCAGCAGACCAGTTGCAGTGTCTTATGTTGCAAATGTGGAATTCCCATTGCACCAAATGCTGCCAATATGTGTGTCAAGTGCTTGGTGTTCTGAAGTTGATATCACTGAAGGTTTGCAGAAGCAATTATGAATTAAGTATTATTCATTTTCCTCATTGTGAGAGTTACTTGCAGCCACCTCGAATTTGGATTAAAGCACAATTAGAATCAAAAGAACTATTAACACTGTATCAAAAGGTTAAAGAATCTGAGTAA

Protein sequence

MRNHKTETAAHSAAAVSAFRRDICRTFLPLSLRAIRTRINYGWRRSIVYDSADQLQCLMLQMWNSHCTKCCQYVCQVLGVLKLISLKVCRSNYELSIIHFPHCESYLQPPRIWIKAQLESKELLTLYQKVKESE*
Homology
[Close]
BLAST of Chy5G095830 vs. ExPASy TrEMBL
Match: A0A6J1D613 (60S ribosomal export protein NMD3 OS=Momordica charantia OX=3673 GN=LOC111017597 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.1e-05
Identity = 33/60 (55.00%), Postives = 37/60 (61.67%), Query Frame = 0 

Query: 67  CTKC-CQYVCQVLGVLKLISLKVCRSNYELSIIHFPHCESYLQPPRIWIKAQLESKELLT 126
           C KC C  V    G+ K           +L+I+H P CESYLQPPR WIKAQLESKELLT
Sbjct: 34  CVKCLCSEVDITEGLQK-----------QLTIMHCPDCESYLQPPRTWIKAQLESKELLT 82

[Close]
BLAST of Chy5G095830 vs. ExPASy TrEMBL
Match: A0A5D3CM67 (60S ribosomal export protein NMD3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002220 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.1e-05
Identity = 33/60 (55.00%), Postives = 37/60 (61.67%), Query Frame = 0 

Query: 67  CTKC-CQYVCQVLGVLKLISLKVCRSNYELSIIHFPHCESYLQPPRIWIKAQLESKELLT 126
           C KC C  V    G+ K           +L+I+H P CESYLQPPR WIKAQLESKELLT
Sbjct: 34  CVKCLCSEVDITEGLQK-----------QLTIMHCPDCESYLQPPRTWIKAQLESKELLT 82

[Close]
BLAST of Chy5G095830 vs. ExPASy TrEMBL
Match: A0A5A7SYS9 (60S ribosomal export protein NMD3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18G00380 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.1e-05
Identity = 33/60 (55.00%), Postives = 37/60 (61.67%), Query Frame = 0 

Query: 67  CTKC-CQYVCQVLGVLKLISLKVCRSNYELSIIHFPHCESYLQPPRIWIKAQLESKELLT 126
           C KC C  V    G+ K           +L+I+H P CESYLQPPR WIKAQLESKELLT
Sbjct: 34  CVKCLCSEVDITEGLQK-----------QLTIMHCPDCESYLQPPRTWIKAQLESKELLT 82

[Close]
BLAST of Chy5G095830 vs. ExPASy TrEMBL
Match: A0A0A0KGY6 (60S ribosomal export protein NMD3 OS=Cucumis sativus OX=3659 GN=Csa_6G502070 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.1e-05
Identity = 33/60 (55.00%), Postives = 37/60 (61.67%), Query Frame = 0 

Query: 67  CTKC-CQYVCQVLGVLKLISLKVCRSNYELSIIHFPHCESYLQPPRIWIKAQLESKELLT 126
           C KC C  V    G+ K           +L+I+H P CESYLQPPR WIKAQLESKELLT
Sbjct: 34  CVKCLCSEVDITEGLQK-----------QLTIMHCPDCESYLQPPRTWIKAQLESKELLT 82

[Close]
BLAST of Chy5G095830 vs. ExPASy TrEMBL
Match: A0A1S3B197 (60S ribosomal export protein NMD3 OS=Cucumis melo OX=3656 GN=LOC103485035 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.1e-05
Identity = 33/60 (55.00%), Postives = 37/60 (61.67%), Query Frame = 0 

Query: 67  CTKC-CQYVCQVLGVLKLISLKVCRSNYELSIIHFPHCESYLQPPRIWIKAQLESKELLT 126
           C KC C  V    G+ K           +L+I+H P CESYLQPPR WIKAQLESKELLT
Sbjct: 34  CVKCLCSEVDITEGLQK-----------QLTIMHCPDCESYLQPPRTWIKAQLESKELLT 82

[Close]
BLAST of Chy5G095830 vs. NCBI nr
Match: KAG6603987.1 (hypothetical protein SDJN03_04596, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 4.59e-10
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 39  INYGWRRSIVYDSADQLQCLMLQMWNSHCTKCCQYVCQVL 78
           IN+GWR  IV  S D  QCLMLQMWNSH TKCCQYV Q+L
Sbjct: 104 INHGWRSRIVCCSTDHWQCLMLQMWNSHGTKCCQYVRQML 143

[Close]
BLAST of Chy5G095830 vs. NCBI nr
Match: KAA0036240.1 (60S ribosomal export protein NMD3 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 2.06e-07
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 94  ELSIIHFPHCESYLQPPRIWIKAQLESKELLT 125
           +L+I+H P CESYLQPPR WIKAQLESKELLT
Sbjct: 51  QLTIMHCPDCESYLQPPRTWIKAQLESKELLT 82

[Close]
BLAST of Chy5G095830 vs. NCBI nr
Match: XP_004143504.1 (60S ribosomal export protein NMD3 [Cucumis sativus] >KGN48818.1 hypothetical protein Csa_003669 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 2.06e-07
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 94  ELSIIHFPHCESYLQPPRIWIKAQLESKELLT 125
           +L+I+H P CESYLQPPR WIKAQLESKELLT
Sbjct: 51  QLTIMHCPDCESYLQPPRTWIKAQLESKELLT 82

[Close]
BLAST of Chy5G095830 vs. NCBI nr
Match: XP_008440695.1 (PREDICTED: 60S ribosomal export protein NMD3 [Cucumis melo] >TYK12635.1 60S ribosomal export protein NMD3 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 2.06e-07
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 94  ELSIIHFPHCESYLQPPRIWIKAQLESKELLT 125
           +L+I+H P CESYLQPPR WIKAQLESKELLT
Sbjct: 51  QLTIMHCPDCESYLQPPRTWIKAQLESKELLT 82

[Close]
BLAST of Chy5G095830 vs. NCBI nr
Match: XP_038883908.1 (60S ribosomal export protein NMD3 isoform X2 [Benincasa hispida] >XP_038883909.1 60S ribosomal export protein NMD3 isoform X2 [Benincasa hispida])

HSP 1 Score: 60.1 bits (144), Expect = 2.06e-07
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 94  ELSIIHFPHCESYLQPPRIWIKAQLESKELLT 125
           +L+I+H P CESYLQPPR WIKAQLESKELLT
Sbjct: 51  QLTIMHCPDCESYLQPPRTWIKAQLESKELLT 82

[Close]
BLAST of Chy5G095830 vs. TAIR 10
Match: AT2G03820.1 (nonsense-mediated mRNA decay NMD3 family protein )

HSP 1 Score: 45.4 bits (106), Expect = 4.1e-05
Identity = 19/31 (61.29%), Postives = 22/31 (70.97%), Query Frame = 0 

Query: 95  LSIIHFPHCESYLQPPRIWIKAQLESKELLT 126
           + I + P C  YLQPP+ WIK Q ESKELLT
Sbjct: 54  IQIFYCPECTCYLQPPKTWIKCQWESKELLT 84

The following BLAST results are available for this feature:
BLAST of Chy5G095830 vs.
Match NameE-valueIdentityDescription
BLAST of Chy5G095830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D6134.1e-0555.0060S ribosomal export protein NMD3 OS=Momordica charantia OX=3673 GN=LOC111017597... [more]
A0A5D3CM674.1e-0555.0060S ribosomal export protein NMD3 OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SYS94.1e-0555.0060S ribosomal export protein NMD3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A0A0KGY64.1e-0555.0060S ribosomal export protein NMD3 OS=Cucumis sativus OX=3659 GN=Csa_6G502070 PE=... [more]
A0A1S3B1974.1e-0555.0060S ribosomal export protein NMD3 OS=Cucumis melo OX=3656 GN=LOC103485035 PE=3 S... [more]
BLAST of Chy5G095830 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6603987.14.59e-1072.50hypothetical protein SDJN03_04596, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0036240.12.06e-0781.2560S ribosomal export protein NMD3 [Cucumis melo var. makuwa][more]
XP_004143504.12.06e-0781.2560S ribosomal export protein NMD3 [Cucumis sativus] >KGN48818.1 hypothetical pro... [more]
XP_008440695.12.06e-0781.25PREDICTED: 60S ribosomal export protein NMD3 [Cucumis melo] >TYK12635.1 60S ribo... [more]
XP_038883908.12.06e-0781.2560S ribosomal export protein NMD3 isoform X2 [Benincasa hispida] >XP_038883909.1... [more]
BLAST of Chy5G095830 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G03820.14.1e-0561.29nonsense-mediated mRNA decay NMD3 family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy5G095830.1Chy5G095830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005622 intracellular anatomical structure