Chy5G094430 (gene) Cucumber (hystrix) v1

Overview
NameChy5G094430
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH05: 4255062 .. 4256865 (+)
RNA-Seq ExpressionChy5G094430
SyntenyChy5G094430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATAATTTTGACACAAAGTAGAAAGGTGAAGGGTATTATATTCTGTATAATTTGGACTTTTTTTTAAAAAAGAGTTTTAAGATATTTGATATTTAAAAGAAATGTAAGAACCCAAACCGCCCGGCTCAAAACTCAAACCGAACCGATTTAATTTTCCTAAAACCCCACACCAAACGGGCCCAAGGTTCCATTCGCACTCGCTTTACTCTCTCAGTCGTCGTGCCGTCAGTGTCTCCTAGGCACCGTTCGCGCCGCCGCCGTTCCCTCTCTCACTCTCAGTCGCCGGTTGCCGCTCACTGTCGTACCTGCGTTTCTCTGGATCTCAATTAACCCACTTGTCTTAGGTTCGTCTTCATCTTTCTCTAAGCTATTGAATGGTTTTTGTTATTATTTTTTCTTTTTATGATTGTGGATTCTGTGTTTTTATTGGGGTCGTGGATTCTTGGTTTAAAATGGGGAAGCTAAGAGTAAATTAGAATGAAATTGGAGGAGGAAAACAGAATCCATTGAAGAAGATCAATGAGCAGCAACAACCGAACAGAGGAAAAAGAGAAGAAGCATTTAGCACTTTAGAGGGTGACTGTGGTTTCCATTTTTTTGCATATAAAGATAAGTAAATGCTCATTTTCCCTGAGAAGTGAATAACTGTGTTTGATTTTGGATGGGTTTAATGAGAAGTGGGCAAACTTTTCGGTTCTATTGGTTGATTTGCTTTGGTAATTGTTTTTATTGAACTCATAATAAATGTTTTGTATCGAGCTAATATGATTTGGATCTCTTCGTCCTTGACGAATGAGATAATGGACATATATACAATGGGATTTATAAAATTACTCTGCAACGCTCAGTAAGTCCGCATAAAATGTTTGTTTAAATGCTTCTGAAGATTTTGGGTCTGTTTACTAGAAAAGTAGAATTCTCATTCATTTCATAACTTACGTCCTGGTTTAATTCCTAACGCAATGTTATACTCTGATGACACGACTCGAAATAACCTTTGAATACTTGTGGATGGTCGAATTTCATGGCTATACTGAAATTTAAATTGCTATTCTATCATTTTGATTGCTTTCTCTTTTAGTGCTTAATATGTATTCTCTCAGTTCCAAAACACTTGATTGAAAAAATGCTTTTTCACCAGTTCTACTTAAAGTTTATGCACGGATAGAATTGCAACATCTTTTCTGCTTTGCTGGTGATTTGACCAATGAAACGAGTATCCAAGTTCCTGCACATAGAAAAACATAAAAACACATGAGACCCAAACACCACCAAGACATGGGATATCGGTCTCCCTGTGTAATACTATTATATATCAACGAGGTTCTCAAGATTTTGCGATCAGTAAGGCAAACAGCACAAGAACAGAGCAATAAATAAATGAAGAAGATAGCAAGGAAACAAAGAAACTGAATTTCTATTCGAGCCAGCCGCCTCTTTCCAAGTGAGCTCTCACTCCCCAAAAACACACCCTTTCACCAAACTGAAGCCAAAACCCTACAAAAACCCCTTCAGCTAGTCCCTACACGTACAACATTCTTCAGCTGGACCCCTCCGCTCTTTCTGCTCGTGTTATTCCTTTCTTACCCTTCTTCCTTTCATACACTTTCATAGTAGGAGGCCTCACAGAACCTAGCCATGTGGCATTTGTTGAAGAATTCCAATTCACTGATTGAATAATATAAGTCTCTGGGATCTGTTTGGAATTCTGTACTCTGTATATATCATTGATGTTCTATGTTGTGGCAAAAGTGTATGAACTCATAAACTGAATGATGAACTGCAGTTTGCTGGAGTAG

mRNA sequence

ATGTTGATAATTTTGACACAAAGTAGAAAGGTTCCATTCGCACTCGCTTTACTCTCTCAGTCGTCGTGCCGTCAGTGTCTCCTAGGCACCGTTCGCGCCGCCGCCGTTCCCTCTCTCACTCTCAGTCGCCGGTTGCCGCTCACTGTCGTACCTGCGTTTCTCTGGATCTCAATTAACCCACTTGTCTTAGTTCTACTTAAAGTTTATGCACGGATAGAATTGCAACATCTTTTCTGCTTTGCTGGTGATTTGACCAATGAAACGATTTGCTGGAGTAG

Coding sequence (CDS)

ATGTTGATAATTTTGACACAAAGTAGAAAGGTTCCATTCGCACTCGCTTTACTCTCTCAGTCGTCGTGCCGTCAGTGTCTCCTAGGCACCGTTCGCGCCGCCGCCGTTCCCTCTCTCACTCTCAGTCGCCGGTTGCCGCTCACTGTCGTACCTGCGTTTCTCTGGATCTCAATTAACCCACTTGTCTTAGTTCTACTTAAAGTTTATGCACGGATAGAATTGCAACATCTTTTCTGCTTTGCTGGTGATTTGACCAATGAAACGATTTGCTGGAGTAG

Protein sequence

MLIILTQSRKVPFALALLSQSSCRQCLLGTVRAAAVPSLTLSRRLPLTVVPAFLWISINPLVLVLLKVYARIELQHLFCFAGDLTNETICWSX
Homology
[Close]
BLAST of Chy5G094430 vs. ExPASy TrEMBL
Match: A0A0A0LLP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G223680 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.2e-33
Identity = 80/89 (89.89%), Postives = 83/89 (93.26%), Query Frame = 0 

Query: 1  MLIILTQSRKVPFALALLSQSSCRQCLLGTVRAAAVPSLTLSRRLPLTVVPAFLWISINP 60
          MLIILT+ RKVPFAL LLSQSSCRQ LL TVRAAAVPSLTL+RRLPLTVVP FLWISINP
Sbjct: 1  MLIILTKIRKVPFALGLLSQSSCRQSLLATVRAAAVPSLTLNRRLPLTVVPGFLWISINP 60

Query: 61 LVLVLLKVYARIELQHLFCFAGDLTNETI 90
          LVLV LKVYARIELQHLFCFAGDLTNET+
Sbjct: 61 LVLVQLKVYARIELQHLFCFAGDLTNETL 89

[Close]
BLAST of Chy5G094430 vs. NCBI nr
Match: KGN61677.1 (hypothetical protein Csa_006472 [Cucumis sativus])

HSP 1 Score: 147 bits (372), Expect = 4.56e-44
Identity = 80/89 (89.89%), Postives = 83/89 (93.26%), Query Frame = 0 

Query: 1  MLIILTQSRKVPFALALLSQSSCRQCLLGTVRAAAVPSLTLSRRLPLTVVPAFLWISINP 60
          MLIILT+ RKVPFAL LLSQSSCRQ LL TVRAAAVPSLTL+RRLPLTVVP FLWISINP
Sbjct: 1  MLIILTKIRKVPFALGLLSQSSCRQSLLATVRAAAVPSLTLNRRLPLTVVPGFLWISINP 60

Query: 61 LVLVLLKVYARIELQHLFCFAGDLTNETI 89
          LVLV LKVYARIELQHLFCFAGDLTNET+
Sbjct: 61 LVLVQLKVYARIELQHLFCFAGDLTNETL 89

The following BLAST results are available for this feature:
BLAST of Chy5G094430 vs.
Match NameE-valueIdentityDescription
BLAST of Chy5G094430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLP37.2e-3389.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G223680 PE=4 SV=1[more]
BLAST of Chy5G094430 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61677.14.56e-4489.89hypothetical protein Csa_006472 [Cucumis sativus][more]
BLAST of Chy5G094430 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy5G094430.1Chy5G094430.1mRNA