Chy5G094430 (gene) Cucumber (hystrix) v1

Overview


Name	Chy5G094430
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH05: 4255062 .. 4256865 (+)
RNA-Seq Expression	Chy5G094430
Synteny	Chy5G094430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGATAATTTTGACACAAAGTAGAAAGGTGAAGGGTATTATATTCTGTATAATTTGGACTTTTTTTTAAAAAAGAGTTTTAAGATATTTGATATTTAAAAGAAATGTAAGAACCCAAACCGCCCGGCTCAAAACTCAAACCGAACCGATTTAATTTTCCTAAAACCCCACACCAAACGGGCCCAAGGTTCCATTCGCACTCGCTTTACTCTCTCAGTCGTCGTGCCGTCAGTGTCTCCTAGGCACCGTTCGCGCCGCCGCCGTTCCCTCTCTCACTCTCAGTCGCCGGTTGCCGCTCACTGTCGTACCTGCGTTTCTCTGGATCTCAATTAACCCACTTGTCTTAGGTTCGTCTTCATCTTTCTCTAAGCTATTGAATGGTTTTTGTTATTATTTTTTCTTTTTATGATTGTGGATTCTGTGTTTTTATTGGGGTCGTGGATTCTTGGTTTAAAATGGGGAAGCTAAGAGTAAATTAGAATGAAATTGGAGGAGGAAAACAGAATCCATTGAAGAAGATCAATGAGCAGCAACAACCGAACAGAGGAAAAAGAGAAGAAGCATTTAGCACTTTAGAGGGTGACTGTGGTTTCCATTTTTTTGCATATAAAGATAAGTAAATGCTCATTTTCCCTGAGAAGTGAATAACTGTGTTTGATTTTGGATGGGTTTAATGAGAAGTGGGCAAACTTTTCGGTTCTATTGGTTGATTTGCTTTGGTAATTGTTTTTATTGAACTCATAATAAATGTTTTGTATCGAGCTAATATGATTTGGATCTCTTCGTCCTTGACGAATGAGATAATGGACATATATACAATGGGATTTATAAAATTACTCTGCAACGCTCAGTAAGTCCGCATAAAATGTTTGTTTAAATGCTTCTGAAGATTTTGGGTCTGTTTACTAGAAAAGTAGAATTCTCATTCATTTCATAACTTACGTCCTGGTTTAATTCCTAACGCAATGTTATACTCTGATGACACGACTCGAAATAACCTTTGAATACTTGTGGATGGTCGAATTTCATGGCTATACTGAAATTTAAATTGCTATTCTATCATTTTGATTGCTTTCTCTTTTAGTGCTTAATATGTATTCTCTCAGTTCCAAAACACTTGATTGAAAAAATGCTTTTTCACCAGTTCTACTTAAAGTTTATGCACGGATAGAATTGCAACATCTTTTCTGCTTTGCTGGTGATTTGACCAATGAAACGAGTATCCAAGTTCCTGCACATAGAAAAACATAAAAACACATGAGACCCAAACACCACCAAGACATGGGATATCGGTCTCCCTGTGTAATACTATTATATATCAACGAGGTTCTCAAGATTTTGCGATCAGTAAGGCAAACAGCACAAGAACAGAGCAATAAATAAATGAAGAAGATAGCAAGGAAACAAAGAAACTGAATTTCTATTCGAGCCAGCCGCCTCTTTCCAAGTGAGCTCTCACTCCCCAAAAACACACCCTTTCACCAAACTGAAGCCAAAACCCTACAAAAACCCCTTCAGCTAGTCCCTACACGTACAACATTCTTCAGCTGGACCCCTCCGCTCTTTCTGCTCGTGTTATTCCTTTCTTACCCTTCTTCCTTTCATACACTTTCATAGTAGGAGGCCTCACAGAACCTAGCCATGTGGCATTTGTTGAAGAATTCCAATTCACTGATTGAATAATATAAGTCTCTGGGATCTGTTTGGAATTCTGTACTCTGTATATATCATTGATGTTCTATGTTGTGGCAAAAGTGTATGAACTCATAAACTGAATGATGAACTGCAGTTTGCTGGAGTAG

mRNA sequence

ATGTTGATAATTTTGACACAAAGTAGAAAGGTTCCATTCGCACTCGCTTTACTCTCTCAGTCGTCGTGCCGTCAGTGTCTCCTAGGCACCGTTCGCGCCGCCGCCGTTCCCTCTCTCACTCTCAGTCGCCGGTTGCCGCTCACTGTCGTACCTGCGTTTCTCTGGATCTCAATTAACCCACTTGTCTTAGTTCTACTTAAAGTTTATGCACGGATAGAATTGCAACATCTTTTCTGCTTTGCTGGTGATTTGACCAATGAAACGATTTGCTGGAGTAG

Coding sequence (CDS)

ATGTTGATAATTTTGACACAAAGTAGAAAGGTTCCATTCGCACTCGCTTTACTCTCTCAGTCGTCGTGCCGTCAGTGTCTCCTAGGCACCGTTCGCGCCGCCGCCGTTCCCTCTCTCACTCTCAGTCGCCGGTTGCCGCTCACTGTCGTACCTGCGTTTCTCTGGATCTCAATTAACCCACTTGTCTTAGTTCTACTTAAAGTTTATGCACGGATAGAATTGCAACATCTTTTCTGCTTTGCTGGTGATTTGACCAATGAAACGATTTGCTGGAGTAG

Protein sequence

MLIILTQSRKVPFALALLSQSSCRQCLLGTVRAAAVPSLTLSRRLPLTVVPAFLWISINPLVLVLLKVYARIELQHLFCFAGDLTNETICWSX

Homology

[Close]

BLAST of Chy5G094430 vs. ExPASy TrEMBL
Match: A0A0A0LLP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G223680 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.2e-33
Identity = 80/89 (89.89%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MLIILTQSRKVPFALALLSQSSCRQCLLGTVRAAAVPSLTLSRRLPLTVVPAFLWISINP 60
          MLIILT+ RKVPFAL LLSQSSCRQ LL TVRAAAVPSLTL+RRLPLTVVP FLWISINP
Sbjct: 1  MLIILTKIRKVPFALGLLSQSSCRQSLLATVRAAAVPSLTLNRRLPLTVVPGFLWISINP 60

Query: 61 LVLVLLKVYARIELQHLFCFAGDLTNETI 90
          LVLV LKVYARIELQHLFCFAGDLTNET+
Sbjct: 61 LVLVQLKVYARIELQHLFCFAGDLTNETL 89

[Close]

BLAST of Chy5G094430 vs. NCBI nr
Match: KGN61677.1 (hypothetical protein Csa_006472 [Cucumis sativus])

HSP 1 Score: 147 bits (372), Expect = 4.56e-44
Identity = 80/89 (89.89%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MLIILTQSRKVPFALALLSQSSCRQCLLGTVRAAAVPSLTLSRRLPLTVVPAFLWISINP 60
          MLIILT+ RKVPFAL LLSQSSCRQ LL TVRAAAVPSLTL+RRLPLTVVP FLWISINP
Sbjct: 1  MLIILTKIRKVPFALGLLSQSSCRQSLLATVRAAAVPSLTLNRRLPLTVVPGFLWISINP 60

Query: 61 LVLVLLKVYARIELQHLFCFAGDLTNETI 89
          LVLV LKVYARIELQHLFCFAGDLTNET+
Sbjct: 61 LVLVQLKVYARIELQHLFCFAGDLTNETL 89

The following BLAST results are available for this feature:

BLAST of Chy5G094430 vs.


Match Name	E-value	Identity	Description

BLAST of Chy5G094430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLP3	7.2e-33	89.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G223680 PE=4 SV=1	[more]

BLAST of Chy5G094430 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61677.1	4.56e-44	89.89	hypothetical protein Csa_006472 [Cucumis sativus]	[more]

BLAST of Chy5G094430 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy5G094430.1	Chy5G094430.1	mRNA