Chy5G093200 (gene) Cucumber (hystrix) v1

Overview


Name	Chy5G093200
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	small acidic protein 1
Location	chrH05: 2565340 .. 2566264 (-)
RNA-Seq Expression	Chy5G093200
Synteny	Chy5G093200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTACATATCCATGGCTTACCATGGTAAGTAAAAACAATTGTCACATTTGCTTCTTTGCCAAAAAAAAAAAAAAAGAAGCAAAGGAAAAACACCAAGTAAAAAGAAGAAAAACTAGAGAAATTTCAATGTTTATAAGAATATAGTTTGAAAATAGGTATTTATATATATAGTTGAAGAAGATAAAAGGTTACAAAATCTTTTTCGATCACATCATTAAATATAAATTTATAAATATAAGAAATAATGTGTCTAGACATTAAAGATTTAGAACATGATTTTATTGTTTATATTAAATAAATAATAATAAGTTATAAAATAATATATAATTAACAAAATAATTTTTTTTTAAAATAATAAATTTTACAAAATATTTACCATTCATAAATCTATCATAATATACTATAGTGTGATAGAAGAACATTAATTATAAATCCAAAATTTGGTTATAATTTATAAATATTTTATTTATTTTGCTATTTTATGTTATATAACAAAATTCTTTTACAGAAGCATTCAAGTGAGCTTTTTTTTTAATTTTTAATTTAAACAATAACTAATGTTTATCTTAAAAGATAATAAATTTAAAATTTGAGGTAGAATTGTGAGAAAAAAAACAATTCCTTTCGTGAGCCAATTTTAATATAAGAATTTTCTTTCTCAAATCCCATTTAGCCGAGTAACAAATTCAACCAAGTCTATTTGGATTTCATTGTTCATTTGGTTAACACAGAGATGAGATCTTCACCGATGGAGTTCTTTGCGGAGCTGGAAGAACAGGGATCTACGGTTGCCATGGACGTCGACGATGTAGACCCACTTGAGATATTGGGCGAGGGTGTGATCTCCGCCGAGAACAAGCTCGCCGACGCCGATTTCTTCAACTTCTTCGAGGATGATTTTGATGACTCTGACATCAACTGA

mRNA sequence

ATGCCTACATATCCATGGCTTACCATGCCGAGTAACAAATTCAACCAAGTCTATTTGGATTTCATTGTTCATTTGGTTAACACAGAGATGAGATCTTCACCGATGGAGTTCTTTGCGGAGCTGGAAGAACAGGGATCTACGGTTGCCATGGACGTCGACGATGTAGACCCACTTGAGATATTGGGCGAGGGTGTGATCTCCGCCGAGAACAAGCTCGCCGACGCCGATTTCTTCAACTTCTTCGAGGATGATTTTGATGACTCTGACATCAACTGA

Coding sequence (CDS)

ATGCCTACATATCCATGGCTTACCATGCCGAGTAACAAATTCAACCAAGTCTATTTGGATTTCATTGTTCATTTGGTTAACACAGAGATGAGATCTTCACCGATGGAGTTCTTTGCGGAGCTGGAAGAACAGGGATCTACGGTTGCCATGGACGTCGACGATGTAGACCCACTTGAGATATTGGGCGAGGGTGTGATCTCCGCCGAGAACAAGCTCGCCGACGCCGATTTCTTCAACTTCTTCGAGGATGATTTTGATGACTCTGACATCAACTGA

Protein sequence

MPTYPWLTMPSNKFNQVYLDFIVHLVNTEMRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNFFEDDFDDSDIN*

Homology

[Close]

BLAST of Chy5G093200 vs. ExPASy Swiss-Prot
Match: Q9T0H2 (Small acidic protein 1 OS=Arabidopsis thaliana OX=3702 GN=SMAP1 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-13
Identity = 35/62 (56.45%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 30 MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNFFEDDFDDSD 89
          MR   ++  +E+++ GS++AMDVDD++ +EIL EG + ++NKLADADFFN F+DDFDD+D
Sbjct: 1  MRPMQLDMLSEMDDAGSSMAMDVDDLEAMEILNEGGLVSDNKLADADFFNKFDDDFDDTD 60

Query: 90 IN 92
          IN
Sbjct: 61 IN 62

[Close]

BLAST of Chy5G093200 vs. ExPASy Swiss-Prot
Match: Q1ECS0 (Small acidic protein 2 OS=Arabidopsis thaliana OX=3702 GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.0e-04
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 36 EFFAELEEQGSTVAM----DVDDVDPLEILGE--GVISAENKLADADFFNFFEDDFDDSD 92
          +F  E+E  G ++ M    D DD  P+++  E  G+   + K  D+DFFN FEDDFDDSD
Sbjct: 17 DFLGEMEYPGYSMPMQMEIDEDDFGPMDMQFEVGGISPFQMKPEDSDFFNKFEDDFDDSD 76

[Close]

BLAST of Chy5G093200 vs. ExPASy TrEMBL
Match: A0A0A0LNK1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G166190 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.9e-24
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 30 MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNFFEDDFDDSD 89
          MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFN FEDDFDDSD
Sbjct: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 90 IN 92
          IN
Sbjct: 61 IN 62

[Close]

BLAST of Chy5G093200 vs. ExPASy TrEMBL
Match: A0A5A7SMJ5 (Small acidic protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00640 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-23
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 30 MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNFFEDDFDDSD 89
          MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFN FEDDFDDSD
Sbjct: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 90 IN 92
          +N
Sbjct: 61 VN 62

[Close]

BLAST of Chy5G093200 vs. ExPASy TrEMBL
Match: A0A1S3CCM1 (small acidic protein 1 OS=Cucumis melo OX=3656 GN=LOC103499479 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-23
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 30 MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNFFEDDFDDSD 89
          MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFN FEDDFDDSD
Sbjct: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 90 IN 92
          +N
Sbjct: 61 VN 62

[Close]

BLAST of Chy5G093200 vs. ExPASy TrEMBL
Match: A0A6J1KE12 (small acidic protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494814 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 30 MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNFFEDDFDDSD 89
          MR +PMEFFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFN FEDDFDDSD
Sbjct: 1  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 90 IN 92
          IN
Sbjct: 61 IN 62

[Close]

BLAST of Chy5G093200 vs. ExPASy TrEMBL
Match: A0A6J1HIH2 (small acidic protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464345 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 30 MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNFFEDDFDDSD 89
          MR +PMEFFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFN FEDDFDDSD
Sbjct: 1  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 90 IN 92
          IN
Sbjct: 61 IN 62

[Close]

BLAST of Chy5G093200 vs. NCBI nr
Match: XP_004147176.1 (small acidic protein 1 [Cucumis sativus] >KGN61541.1 hypothetical protein Csa_023613 [Cucumis sativus])

HSP 1 Score: 120 bits (302), Expect = 9.10e-34
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 30 MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNFFEDDFDDSD 89
          MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFN FEDDFDDSD
Sbjct: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 90 IN 91
          IN
Sbjct: 61 IN 62

[Close]

BLAST of Chy5G093200 vs. NCBI nr
Match: XP_008460713.1 (PREDICTED: small acidic protein 1 [Cucumis melo] >KAA0031980.1 small acidic protein 1 [Cucumis melo var. makuwa] >TYK16800.1 small acidic protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (301), Expect = 1.29e-33
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 30 MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNFFEDDFDDSD 89
          MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFN FEDDFDDSD
Sbjct: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 90 IN 91
          +N
Sbjct: 61 VN 62

[Close]

BLAST of Chy5G093200 vs. NCBI nr
Match: XP_038875245.1 (small acidic protein 1 [Benincasa hispida])

HSP 1 Score: 117 bits (294), Expect = 1.51e-32
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 30 MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNFFEDDFDDSD 89
          MR +PMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFN FEDDFDDSD
Sbjct: 1  MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 90 IN 91
          IN
Sbjct: 61 IN 62

[Close]

BLAST of Chy5G093200 vs. NCBI nr
Match: KAG6593800.1 (Small acidic protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119 bits (297), Expect = 1.69e-32
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 29  EMRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNFFEDDFDDS 88
           EMR +PMEFFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFN FEDDFDDS
Sbjct: 41  EMRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDS 100

Query: 89  DIN 91
           DIN
Sbjct: 101 DIN 103

[Close]

BLAST of Chy5G093200 vs. NCBI nr
Match: KAG7026131.1 (Small acidic protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119 bits (297), Expect = 2.34e-32
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 29  EMRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNFFEDDFDDS 88
           EMR +PMEFFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFN FEDDFDDS
Sbjct: 52  EMRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDS 111

Query: 89  DIN 91
           DIN
Sbjct: 112 DIN 114

[Close]

BLAST of Chy5G093200 vs. TAIR 10
Match: AT4G13520.1 (small acidic protein 1 )

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-14
Identity = 35/62 (56.45%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 30 MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNFFEDDFDDSD 89
          MR   ++  +E+++ GS++AMDVDD++ +EIL EG + ++NKLADADFFN F+DDFDD+D
Sbjct: 1  MRPMQLDMLSEMDDAGSSMAMDVDDLEAMEILNEGGLVSDNKLADADFFNKFDDDFDDTD 60

Query: 90 IN 92
          IN
Sbjct: 61 IN 62

[Close]

BLAST of Chy5G093200 vs. TAIR 10
Match: AT3G24280.1 (small acidic protein 2 )

HSP 1 Score: 45.8 bits (107), Expect = 2.1e-05
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 36 EFFAELEEQGSTVAM----DVDDVDPLEILGE--GVISAENKLADADFFNFFEDDFDDSD 92
          +F  E+E  G ++ M    D DD  P+++  E  G+   + K  D+DFFN FEDDFDDSD
Sbjct: 17 DFLGEMEYPGYSMPMQMEIDEDDFGPMDMQFEVGGISPFQMKPEDSDFFNKFEDDFDDSD 76

The following BLAST results are available for this feature:

BLAST of Chy5G093200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T0H2	1.6e-13	56.45	Small acidic protein 1 OS=Arabidopsis thaliana OX=3702 GN=SMAP1 PE=1 SV=1	[more]
Q1ECS0	3.0e-04	45.16	Small acidic protein 2 OS=Arabidopsis thaliana OX=3702 GN=SMAP2 PE=2 SV=1	[more]

BLAST of Chy5G093200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNK1	7.9e-24	98.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G166190 PE=4 SV=1	[more]
A0A5A7SMJ5	1.0e-23	96.77	Small acidic protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9...	[more]
A0A1S3CCM1	1.0e-23	96.77	small acidic protein 1 OS=Cucumis melo OX=3656 GN=LOC103499479 PE=4 SV=1	[more]
A0A6J1KE12	1.1e-22	93.55	small acidic protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494814 PE=4 SV=1	[more]
A0A6J1HIH2	1.1e-22	93.55	small acidic protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464345 PE=4 SV=1	[more]

BLAST of Chy5G093200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147176.1	9.10e-34	98.39	small acidic protein 1 [Cucumis sativus] >KGN61541.1 hypothetical protein Csa_02...	[more]
XP_008460713.1	1.29e-33	96.77	PREDICTED: small acidic protein 1 [Cucumis melo] >KAA0031980.1 small acidic prot...	[more]
XP_038875245.1	1.51e-32	95.16	small acidic protein 1 [Benincasa hispida]	[more]
KAG6593800.1	1.69e-32	93.65	Small acidic protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7026131.1	2.34e-32	93.65	Small acidic protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Chy5G093200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13520.1	1.1e-14	56.45	small acidic protein 1	[more]
AT3G24280.1	2.1e-05	45.16	small acidic protein 2	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy5G093200.1	Chy5G093200.1	mRNA