Chy5G091720 (gene) Cucumber (hystrix) v1

Overview
NameChy5G091720
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionNeurofilament heavy protein
LocationchrH05: 975857 .. 976060 (-)
RNA-Seq ExpressionChy5G091720
SyntenyChy5G091720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGGGGGAGACTTGTACACGTAGGGTGGCGGTGGAGAGGGAGATGGCGGTGGAGGGGACTTATAGACATAAGGAGGAGGTGGTGAAGGAGATGGTGGTGGGGGAGACTTGTACACGTAAGGTGGCGGTGGAGAGGGAGATGGTGGTGGAGGTGACTTATAGACATAAGGAGGAGGTGGTGATGGTGATGGAGGTGGTG

mRNA sequence

ATGGTGGTGGGGGAGACTTGTACACGTAGGGTGGCGGTGGAGAGGGAGATGGCGGTGGAGGGGACTTATAGACATAAGGAGGAGGTGGTGAAGGAGATGGTGGTGGGGGAGACTTGTACACGTAAGGTGGCGGTGGAGAGGGAGATGGTGGTGGAGGTGACTTATAGACATAAGGAGGAGGTGGTGATGGTGATGGAGGTGGTG

Coding sequence (CDS)

ATGGTGGTGGGGGAGACTTGTACACGTAGGGTGGCGGTGGAGAGGGAGATGGCGGTGGAGGGGACTTATAGACATAAGGAGGAGGTGGTGAAGGAGATGGTGGTGGGGGAGACTTGTACACGTAAGGTGGCGGTGGAGAGGGAGATGGTGGTGGAGGTGACTTATAGACATAAGGAGGAGGTGGTGATGGTGATGGAGGTGGTG

Protein sequence

MVVGETCTRRVAVEREMAVEGTYRHKEEVVKEMVVGETCTRKVAVEREMVVEVTYRHKEEVVMVMEVV
Homology
BLAST of Chy5G091720 vs. ExPASy TrEMBL
Match: A0A5D2E3J8 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A13G252200v1 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.1e-05
Identity = 38/68 (55.88%), Postives = 44/68 (64.71%), Query Frame = 0

Query: 1   MVVGETCTRRVAVEREMAVEGTYRHKEEVVKEMVVGETCTRKVAVEREMVVEVTYRHKEE 60
           MV   TC  +V V + M V GTY+ KEEVV+EMV  ETC  +V V +EMV  VT RH  E
Sbjct: 254 MVEVVTCRHKVEVVKVMVVVGTYKCKEEVVREMVEVETCKHRVVVVKEMVEVVTCRHSAE 313

Query: 61  VVMVMEVV 69
           VV VM VV
Sbjct: 314 VVKVMVVV 321

BLAST of Chy5G091720 vs. ExPASy TrEMBL
Match: A0A0S3SDC3 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.06G206400 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-04
Identity = 37/68 (54.41%), Postives = 43/68 (63.24%), Query Frame = 0

Query: 1   MVVGETCTRRVAVEREMAVEGTYRHKEEVVKEMVVGETCTRKVAVEREMVVEVTYRHKEE 60
           MVV  T      V REM V GTY+H+E VVKEMVV  TC  +  V +EMVV  TY+H+E 
Sbjct: 81  MVVVGTYKHMEVVVREMVVVGTYKHREVVVKEMVVVGTCKHREVVVKEMVVVGTYKHREV 140

Query: 61  VVMVMEVV 69
           VV  M VV
Sbjct: 141 VVKEMLVV 148

BLAST of Chy5G091720 vs. ExPASy TrEMBL
Match: A0A2P5CDA6 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_161510 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-04
Identity = 36/66 (54.55%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 1  MVVGETCTRRVAVEREMAVEGTYRHKEEVVKEMVVGETCTRKVAVEREMVVEVTYRHKEE 60
          +VV E C R+VA  R M  E TYRHKE  V EMVV ETC  +  V + MV EV   +KE 
Sbjct: 19 LVVEEICIRKVAEVRVMEEEVTYRHKEVAVMEMVVVETCKHRAVVVKVMVEEVICIYKEV 78

Query: 61 VVMVME 67
          VV VME
Sbjct: 79 VVRVME 84

BLAST of Chy5G091720 vs. ExPASy TrEMBL
Match: A0A5N5H8Y9 (Neurofilament heavy protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_025205 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-04
Identity = 39/67 (58.21%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 1   MVVGETCTRRVAVEREMAVEGTYRHKEEVVKEMVVGETCTRKVAVEREMVVEVTYRHKEE 60
           MVV ETCT  V VE   AV  T  H   V K M V  TCT KV  ERE VV  T RHK  
Sbjct: 120 MVVVETCTHIVVVEMVTAVVETCTHMVVVEKVMAVAGTCTHKVVEEREKVVVETCRHKAV 179

Query: 61  VVMVMEV 68
           VVMVMEV
Sbjct: 180 VVMVMEV 186

BLAST of Chy5G091720 vs. ExPASy TrEMBL
Match: A0A2I0K2H6 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_017266 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.7e-04
Identity = 38/69 (55.07%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 1   MVVGETCTRRVAVEREMAVEGTYRHKEEVVKEMVVGETCTRKVAVEREMVVEVTYRHK-- 60
           M V E C+ RV VE+EMAV  T RH+ EVVKEMV G TC+  V VER M VE T   K  
Sbjct: 230 MEVVEICSSRVVVEKEMAVAVTCRHRVEVVKEMVEGGTCSNTVVVERVMEVEGTCSSKVV 289

Query: 61  EEVVMVMEV 68
            E  +V+EV
Sbjct: 290 GETSLVVEV 298

BLAST of Chy5G091720 vs. NCBI nr
Match: TYG87905.1 (hypothetical protein ES288_A13G252200v1 [Gossypium darwinii])

HSP 1 Score: 57.4 bits (137), Expect = 1.69e-07
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 0

Query: 6   TCTRRVAVEREMAVEGTYRHKEEVVKEMVVGETCTRKVAVEREMVVEVTYRHKEEVVMVM 65
           TC  +V V + M V GTY+ KEEVV+EMV  ETC  +V V +EMV  VT RH  EVV VM
Sbjct: 259 TCRHKVEVVKVMVVVGTYKCKEEVVREMVEVETCKHRVVVVKEMVEVVTCRHSAEVVKVM 318

Query: 66  EVV 68
            VV
Sbjct: 319 VVV 321

BLAST of Chy5G091720 vs. NCBI nr
Match: BAT90779.1 (hypothetical protein VIGAN_06206400 [Vigna angularis var. angularis])

HSP 1 Score: 54.7 bits (130), Expect = 1.38e-06
Identity = 37/68 (54.41%), Postives = 43/68 (63.24%), Query Frame = 0

Query: 1   MVVGETCTRRVAVEREMAVEGTYRHKEEVVKEMVVGETCTRKVAVEREMVVEVTYRHKEE 60
           MVV  T      V REM V GTY+H+E VVKEMVV  TC  +  V +EMVV  TY+H+E 
Sbjct: 81  MVVVGTYKHMEVVVREMVVVGTYKHREVVVKEMVVVGTCKHREVVVKEMVVVGTYKHREV 140

Query: 61  VVMVMEVV 68
           VV  M VV
Sbjct: 141 VVKEMLVV 148

BLAST of Chy5G091720 vs. NCBI nr
Match: KAB2623023.1 (neurofilament heavy protein [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 53.9 bits (128), Expect = 2.69e-06
Identity = 39/67 (58.21%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 1   MVVGETCTRRVAVEREMAVEGTYRHKEEVVKEMVVGETCTRKVAVEREMVVEVTYRHKEE 60
           MVV ETCT  V VE   AV  T  H   V K M V  TCT KV  ERE VV  T RHK  
Sbjct: 120 MVVVETCTHIVVVEMVTAVVETCTHMVVVEKVMAVAGTCTHKVVEEREKVVVETCRHKAV 179

Query: 61  VVMVMEV 67
           VVMVMEV
Sbjct: 180 VVMVMEV 186

BLAST of Chy5G091720 vs. NCBI nr
Match: PKI62340.1 (hypothetical protein CRG98_017266 [Punica granatum])

HSP 1 Score: 53.9 bits (128), Expect = 2.94e-06
Identity = 34/58 (58.62%), Postives = 38/58 (65.52%), Query Frame = 0

Query: 1   MVVGETCTRRVAVEREMAVEGTYRHKEEVVKEMVVGETCTRKVAVEREMVVEVTYRHK 58
           M V E C+ RV VE+EMAV  T RH+ EVVKEMV G TC+  V VER M VE T   K
Sbjct: 230 MEVVEICSSRVVVEKEMAVAVTCRHRVEVVKEMVEGGTCSNTVVVERVMEVEGTCSSK 287

BLAST of Chy5G091720 vs. NCBI nr
Match: PON59032.1 (hypothetical protein PanWU01x14_161510 [Parasponia andersonii])

HSP 1 Score: 53.5 bits (127), Expect = 3.72e-06
Identity = 36/66 (54.55%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 1  MVVGETCTRRVAVEREMAVEGTYRHKEEVVKEMVVGETCTRKVAVEREMVVEVTYRHKEE 60
          +VV E C R+VA  R M  E TYRHKE  V EMVV ETC  +  V + MV EV   +KE 
Sbjct: 19 LVVEEICIRKVAEVRVMEEEVTYRHKEVAVMEMVVVETCKHRAVVVKVMVEEVICIYKEV 78

Query: 61 VVMVME 66
          VV VME
Sbjct: 79 VVRVME 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D2E3J82.1e-0555.88Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A13G252200v1 PE=... [more]
A0A0S3SDC31.4e-0454.41Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.06G... [more]
A0A2P5CDA62.3e-0454.55Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_161510 PE... [more]
A0A5N5H8Y92.3e-0458.21Neurofilament heavy protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=... [more]
A0A2I0K2H66.7e-0455.07Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_017266 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
TYG87905.11.69e-0757.14hypothetical protein ES288_A13G252200v1 [Gossypium darwinii][more]
BAT90779.11.38e-0654.41hypothetical protein VIGAN_06206400 [Vigna angularis var. angularis][more]
KAB2623023.12.69e-0658.21neurofilament heavy protein [Pyrus ussuriensis x Pyrus communis][more]
PKI62340.12.94e-0658.62hypothetical protein CRG98_017266 [Punica granatum][more]
PON59032.13.72e-0654.55hypothetical protein PanWU01x14_161510 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy5G091720.1Chy5G091720.1mRNA