Chy5G090560 (gene) Cucumber (hystrix) v1

Overview
NameChy5G090560
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionMediator of RNA polymerase II transcription subunit 21
LocationchrH05: 98203 .. 99953 (+)
RNA-Seq ExpressionChy5G090560
SyntenyChy5G090560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAGTGCAACCATCGCAGAGCAACCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGGTGCGTATCATTTATTCTGTACCTTAATACTTCGGGGTGGAAAATATGAATATGTGATGCTTGTTGATGTACCTCTTGTTAATAACTTTTTCACGCATCGAAACATCAAGAAAACTATTTGCATTTTCCATTTGAGGAAATTCAGTATCCTAGATTAACTTTACATGCATTCTGTCTGGTGTCTACTGGGTAAGTAGCCGAGAATGCAGTATCTACTTGAAGCACCCTTGTGTTGAGGTTGGAAGAGAAAAAAAAAAAAAAAAAAATCAAGGCAGCAGATTTCCTGCTACTTGTTTGAGATGAGTACGTATTCTAATGCCATGATATATGATACAATCCACAAATTTGGTATTGAAAACTTCAGTCTATTTTTGCCATCCAACATCAAATACTACTTAGGTAGGTATGGCTATTCGGTCGGCAATAAAACAAAGTACTATGGTTGTTTTTTTTAGTTATCCTTTTGCTTTTTTAACTGCTTGTTATGTATATTTGGGCCCACTTTAAGGTGTTCTTTAAGTGTTGATATTTTGGAATCTGATACTCAAACCCTGTATTTGAGCAATTTTGCTGAGAGAGTTTTAATTTTCACAAGTTTCCATCGTCGAACTCAGCAATGCATTAAGGTTTGTTCTTTCGAATAATCTTTTAAGGATTATATAGAATTTATAAAATGCACTGATTCTGTCCACGTTAAGTTTGAAAATCCCAGTGTGATTGTATTAAGCAATAAAAACGTACAAAGTTTTCCAACTCTACTGGGCTTTTAATGTCTTCTAGATGTGATTCTTCAACGAGTTAGATTTGTTCTATATATTCTCTCATTTTCTGTATTTTTTACGATTACCTCTTGATTGGTATGTTATTTTACTAGCTTTTTGAGGAGTTGCAAGGAGTCAACTGAGGAATTTCTCCTCCATCCACTTTTTTCTTTGGAAAGGCTGTTTTCGTGGTAGGTTGGAGTATATGCTAATTTGTGGGGTGCGGGGTGCAAGAGAAATGATAGAATCTTCAAGGGAGAAATAATCGAATCTTGGATCTTGAAGATTCGTTTTAAGAATTAATGGCTTAGTCACATTTCACTTGATTGGAGCCCTTCCCCTTATAGTTAGATACACTTTTTGTGAACACCATTCTGTATGTTCATGTATTCTTTCACCTTGTTTTTCAACAAAAGTCTAGTCGTACATCAAAAACAAAATTTATCAGCATTTTGAACGAAAGAAAGGGATGGGATCTTGCTTCATTTATTTGCAATCATCCAATTGAACATGTGTACCTTTTCTTAAAAAAATTATTGTCAATATTTTCGAGCACAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAACAGTTGAAAAGGATTGCAGAACTACAGGTATGAATTCTCATATTCTGATGTTGATATAAGATCAAGAGTTGTTGTTTTGTTACTTCTTTGTATGTATTTCAGGCTGAGAACGATGTTGTAGGCCAAGAACTTCAAAAGCAGCTACAAGCAGCAGGTGTTATCTCTGTCTGA

mRNA sequence

ATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAGTGCAACCATCGCAGAGCAACCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAACAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGCCAAGAACTTCAAAAGCAGCTACAAGCAGCAGGTGTTATCTCTGTCTGA

Coding sequence (CDS)

ATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAGTGCAACCATCGCAGAGCAACCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAACAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGCCAAGAACTTCAAAAGCAGCTACAAGCAGCAGGTGTTATCTCTGTCTGA

Protein sequence

MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAGVISV*
Homology
BLAST of Chy5G090560 vs. ExPASy Swiss-Prot
Match: C0LU16 (Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana OX=3702 GN=MED21 PE=1 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.0e-40
Identity = 91/114 (79.82%), Postives = 98/114 (85.96%), Query Frame = 0

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSAT-IAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D AT   EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 114
           +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ END+VGQELQKQL+AA
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAA 114

BLAST of Chy5G090560 vs. ExPASy TrEMBL
Match: A0A5A7TEZ9 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00920 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.4e-51
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 114
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 113

BLAST of Chy5G090560 vs. ExPASy TrEMBL
Match: A0A1S3BN38 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo OX=3656 GN=LOC103491637 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.4e-51
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 114
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 113

BLAST of Chy5G090560 vs. ExPASy TrEMBL
Match: A0A0A0KZ00 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis sativus OX=3659 GN=Csa_4G268030 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 9.8e-51
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED+ATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 114
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 113

BLAST of Chy5G090560 vs. ExPASy TrEMBL
Match: A0A5D3DEB7 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G001120 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.3e-50
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 114
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 113

BLAST of Chy5G090560 vs. ExPASy TrEMBL
Match: A0A6J1DHM9 (Mediator of RNA polymerase II transcription subunit 21 OS=Momordica charantia OX=3673 GN=LOC111021179 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.7e-48
Identity = 108/113 (95.58%), Postives = 109/113 (96.46%), Query Frame = 0

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPPSQEPTEDSA IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 114
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQL+AA
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAA 113

BLAST of Chy5G090560 vs. NCBI nr
Match: XP_008449895.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo] >KAA0040117.1 mediator of RNA polymerase II transcription subunit 21 [Cucumis melo var. makuwa])

HSP 1 Score: 210 bits (534), Expect = 1.16e-67
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 113
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 113

BLAST of Chy5G090560 vs. NCBI nr
Match: XP_004149640.1 (mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus] >KGN54019.1 hypothetical protein Csa_021664 [Cucumis sativus])

HSP 1 Score: 209 bits (531), Expect = 3.34e-67
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED+ATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 113
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 113

BLAST of Chy5G090560 vs. NCBI nr
Match: TYK21740.1 (mediator of RNA polymerase II transcription subunit 21 [Cucumis melo var. makuwa])

HSP 1 Score: 208 bits (530), Expect = 4.74e-67
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 113
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 113

BLAST of Chy5G090560 vs. NCBI nr
Match: XP_038902781.1 (mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida])

HSP 1 Score: 205 bits (521), Expect = 1.12e-65
Identity = 110/113 (97.35%), Postives = 111/113 (98.23%), Query Frame = 0

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVN+IAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSA IAEQPKLM
Sbjct: 1   MDIISQLQEQVNSIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 113
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQLQAA
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLQAA 113

BLAST of Chy5G090560 vs. NCBI nr
Match: XP_038893979.1 (mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida] >XP_038893980.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida])

HSP 1 Score: 202 bits (515), Expect = 9.16e-65
Identity = 109/113 (96.46%), Postives = 109/113 (96.46%), Query Frame = 0

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPPS EPTEDSA IAEQPKLM
Sbjct: 1   MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 113
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQLQAA
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLQAA 113

BLAST of Chy5G090560 vs. TAIR 10
Match: AT4G04780.1 (mediator 21 )

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-41
Identity = 91/114 (79.82%), Postives = 98/114 (85.96%), Query Frame = 0

Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSAT-IAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D AT   EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAA 114
           +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ END+VGQELQKQL+AA
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAA 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
C0LU162.0e-4079.82Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A5A7TEZ94.4e-51100.00Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. maku... [more]
A0A1S3BN384.4e-51100.00Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo OX=3656 G... [more]
A0A0A0KZ009.8e-5199.12Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis sativus OX=365... [more]
A0A5D3DEB71.3e-5099.12Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. maku... [more]
A0A6J1DHM92.7e-4895.58Mediator of RNA polymerase II transcription subunit 21 OS=Momordica charantia OX... [more]
Match NameE-valueIdentityDescription
XP_008449895.11.16e-67100.00PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo]... [more]
XP_004149640.13.34e-6799.12mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus] >KGN540... [more]
TYK21740.14.74e-6799.12mediator of RNA polymerase II transcription subunit 21 [Cucumis melo var. makuwa... [more]
XP_038902781.11.12e-6597.35mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida][more]
XP_038893979.19.16e-6596.46mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida] ... [more]
Match NameE-valueIdentityDescription
AT4G04780.11.4e-4179.82mediator 21 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 92..112
NoneNo IPR availableGENE3D6.10.280.10Mediator complex, subunit Med21coord: 1..117
e-value: 4.3E-26
score: 93.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..50
IPR021384Mediator complex, subunit Med21PFAMPF11221Med21coord: 1..113
e-value: 2.6E-24
score: 86.1
IPR021384Mediator complex, subunit Med21PANTHERPTHR13381RNA POLYMERASE II HOLOENZYME COMPONENT SRB7coord: 1..113
IPR037212Mediator complex, subunit Med7/Med21-likeSUPERFAMILY140718Mediator hinge subcomplex-likecoord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy5G090560.1Chy5G090560.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050832 defense response to fungus
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0016592 mediator complex
cellular_component GO:0043078 polar nucleus
molecular_function GO:0003712 transcription coregulator activity