Chy5G090560 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAGTGCAACCATCGCAGAGCAACCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGGTGCGTATCATTTATTCTGTACCTTAATACTTCGGGGTGGAAAATATGAATATGTGATGCTTGTTGATGTACCTCTTGTTAATAACTTTTTCACGCATCGAAACATCAAGAAAACTATTTGCATTTTCCATTTGAGGAAATTCAGTATCCTAGATTAACTTTACATGCATTCTGTCTGGTGTCTACTGGGTAAGTAGCCGAGAATGCAGTATCTACTTGAAGCACCCTTGTGTTGAGGTTGGAAGAGAAAAAAAAAAAAAAAAAAATCAAGGCAGCAGATTTCCTGCTACTTGTTTGAGATGAGTACGTATTCTAATGCCATGATATATGATACAATCCACAAATTTGGTATTGAAAACTTCAGTCTATTTTTGCCATCCAACATCAAATACTACTTAGGTAGGTATGGCTATTCGGTCGGCAATAAAACAAAGTACTATGGTTGTTTTTTTTAGTTATCCTTTTGCTTTTTTAACTGCTTGTTATGTATATTTGGGCCCACTTTAAGGTGTTCTTTAAGTGTTGATATTTTGGAATCTGATACTCAAACCCTGTATTTGAGCAATTTTGCTGAGAGAGTTTTAATTTTCACAAGTTTCCATCGTCGAACTCAGCAATGCATTAAGGTTTGTTCTTTCGAATAATCTTTTAAGGATTATATAGAATTTATAAAATGCACTGATTCTGTCCACGTTAAGTTTGAAAATCCCAGTGTGATTGTATTAAGCAATAAAAACGTACAAAGTTTTCCAACTCTACTGGGCTTTTAATGTCTTCTAGATGTGATTCTTCAACGAGTTAGATTTGTTCTATATATTCTCTCATTTTCTGTATTTTTTACGATTACCTCTTGATTGGTATGTTATTTTACTAGCTTTTTGAGGAGTTGCAAGGAGTCAACTGAGGAATTTCTCCTCCATCCACTTTTTTCTTTGGAAAGGCTGTTTTCGTGGTAGGTTGGAGTATATGCTAATTTGTGGGGTGCGGGGTGCAAGAGAAATGATAGAATCTTCAAGGGAGAAATAATCGAATCTTGGATCTTGAAGATTCGTTTTAAGAATTAATGGCTTAGTCACATTTCACTTGATTGGAGCCCTTCCCCTTATAGTTAGATACACTTTTTGTGAACACCATTCTGTATGTTCATGTATTCTTTCACCTTGTTTTTCAACAAAAGTCTAGTCGTACATCAAAAACAAAATTTATCAGCATTTTGAACGAAAGAAAGGGATGGGATCTTGCTTCATTTATTTGCAATCATCCAATTGAACATGTGTACCTTTTCTTAAAAAAATTATTGTCAATATTTTCGAGCACAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAACAGTTGAAAAGGATTGCAGAACTACAGGTATGAATTCTCATATTCTGATGTTGATATAAGATCAAGAGTTGTTGTTTTGTTACTTCTTTGTATGTATTTCAGGCTGAGAACGATGTTGTAGGCCAAGAACTTCAAAAGCAGCTACAAGCAGCAGGTGTTATCTCTGTCTGA ATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAGTGCAACCATCGCAGAGCAACCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAACAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGCCAAGAACTTCAAAAGCAGCTACAAGCAGCAGGTGTTATCTCTGTCTGA ATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAGTGCAACCATCGCAGAGCAACCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAACAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGCCAAGAACTTCAAAAGCAGCTACAAGCAGCAGGTGTTATCTCTGTCTGA MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAGVISV* Homology
BLAST of Chy5G090560 vs. ExPASy Swiss-Prot
Match: C0LU16 (Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana OX=3702 GN=MED21 PE=1 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 2.0e-40 Identity = 91/114 (79.82%), Postives = 98/114 (85.96%), Query Frame = 0
BLAST of Chy5G090560 vs. ExPASy TrEMBL
Match: A0A5A7TEZ9 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00920 PE=3 SV=1) HSP 1 Score: 210.3 bits (534), Expect = 4.4e-51 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of Chy5G090560 vs. ExPASy TrEMBL
Match: A0A1S3BN38 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo OX=3656 GN=LOC103491637 PE=3 SV=1) HSP 1 Score: 210.3 bits (534), Expect = 4.4e-51 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of Chy5G090560 vs. ExPASy TrEMBL
Match: A0A0A0KZ00 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis sativus OX=3659 GN=Csa_4G268030 PE=3 SV=1) HSP 1 Score: 209.1 bits (531), Expect = 9.8e-51 Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of Chy5G090560 vs. ExPASy TrEMBL
Match: A0A5D3DEB7 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G001120 PE=3 SV=1) HSP 1 Score: 208.8 bits (530), Expect = 1.3e-50 Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0
BLAST of Chy5G090560 vs. ExPASy TrEMBL
Match: A0A6J1DHM9 (Mediator of RNA polymerase II transcription subunit 21 OS=Momordica charantia OX=3673 GN=LOC111021179 PE=3 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 2.7e-48 Identity = 108/113 (95.58%), Postives = 109/113 (96.46%), Query Frame = 0
BLAST of Chy5G090560 vs. NCBI nr
Match: XP_008449895.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo] >KAA0040117.1 mediator of RNA polymerase II transcription subunit 21 [Cucumis melo var. makuwa]) HSP 1 Score: 210 bits (534), Expect = 1.16e-67 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of Chy5G090560 vs. NCBI nr
Match: XP_004149640.1 (mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus] >KGN54019.1 hypothetical protein Csa_021664 [Cucumis sativus]) HSP 1 Score: 209 bits (531), Expect = 3.34e-67 Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of Chy5G090560 vs. NCBI nr
Match: TYK21740.1 (mediator of RNA polymerase II transcription subunit 21 [Cucumis melo var. makuwa]) HSP 1 Score: 208 bits (530), Expect = 4.74e-67 Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0
BLAST of Chy5G090560 vs. NCBI nr
Match: XP_038902781.1 (mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]) HSP 1 Score: 205 bits (521), Expect = 1.12e-65 Identity = 110/113 (97.35%), Postives = 111/113 (98.23%), Query Frame = 0
BLAST of Chy5G090560 vs. NCBI nr
Match: XP_038893979.1 (mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida] >XP_038893980.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]) HSP 1 Score: 202 bits (515), Expect = 9.16e-65 Identity = 109/113 (96.46%), Postives = 109/113 (96.46%), Query Frame = 0
BLAST of Chy5G090560 vs. TAIR 10
Match: AT4G04780.1 (mediator 21 ) HSP 1 Score: 166.4 bits (420), Expect = 1.4e-41 Identity = 91/114 (79.82%), Postives = 98/114 (85.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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