Chy5G090550 (gene) Cucumber (hystrix) v1

Overview


Name	Chy5G090550
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	NusB domain-containing protein
Location	chrH05: 71545 .. 90589 (+)
RNA-Seq Expression	Chy5G090550
Synteny	Chy5G090550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGATTATCCATCCGATACGGCTTACTCACCACCCAACAAGTTGGAGGAGTTTCCTTCCTCTTCCACTAGGAAATGGCTTTGCCTCCAAATCCCCTGTGAGTAACGTGAGCTGATTTTGGGGCATTTCACAATGTCTTTAGCTCCACCCACCTCCCTTTATCCCTATTCTTCCCACTCTCATTCCCTCCCCAAATCCCATTTGTTTTCCTTTACTCAAGGTTCCCATCCCAACCTCTTTCCCTTACGCTTTCCCTTTCATCCTAGTTTCTCCACCTCTTTTTCAACCCTTCATTCCCTTAAATCCTCAGCTTTCAAAACCGACATTGGACTCGGAGATTCCCATGATGCTGACCAACCTCACGAACAGTATCAAGTGGAGCAGGAGCAGCCTCATGGTTTGAAATTTGCGCCTGGAGCTTCTGCCCACAGGACTCGACTCTTCACCGTTGGGGATAAAGTTATCACTACCAGGTTTCTTTTTCCTTTGCCCTTCCACTTCTTCTGTTCTCTATTCTTTACCTACTCCCCTCTTTCCCTTTTCAGTTTAAACTCTGCTTCCTAAATCTTGCTCACCATGTAAGGAGAATTAAGGAATTAATGGTAAATCTTGGGTAAATTCATGTTAATCATTTTTTAGTTTCTTATTTGAATTTTAATTCCTGTTTAGTTTCATTATGGGATTTCATTTTCCATAAACTGGAGTCCTCCCTCATGTACCTTTACAACTTCGATTTATATTAAGTTTTGAAAGTTGATAATTGGATAATTTTCTCCTTTGGGTCCTTTAGGCTACATCAGTTCACCAACAACAATTGACATCTCTGTTAATTTCTCACGCTTAGCAATTTGAATTGTGAAATAGAGACGGTAGGATGTGGCACGCTTCATCACTTCATCCTAGTTACTCCCTCTAAATACTTGCATCATCTTTACAACTTTCCAGAATCGTGGAGGCAGGGTCAGTGATAACATTTGCTTTAAAGATCAGTTTTGGATCTTTCCTTAGTAGTCTAAAATTGGGCTATACCAGATGTGGCACCTGGATGAGCATCGAGATAACACGACCACCATCTTATACTGGTCAACACTAACGAACTTGGTTTTATGTAATCCAACCTTGGTTACTATGTAGAAAAACACTAATGAAACTAAAAGCTTTGTTCTTCCTGATACTCCTTCCCTTGCGAGCTTGGAGTTGCTCCTGAATTCAACAAGCTTAAGAGCTTACGGGCTGATTGGGGAGAGGAGTTGGGTGGGGTGGAGTTGTTTGGCCGCAGGAGTTATTAAACACATTGTAGATCACCCGATTCATTAGCATCACTTTCATGATTTATTAACTCCTTACATTGTGGGTCCATAACTAAACAACTTTATTTTTCATTCCCTCGTGGGTTATGGTAAATTTAGTGAGTAATTTATATTCTTGACACTCTAGACTATTGGATATTAATTGAGACAACTGCTAGAGGCAAGGAAATTGTCATATTGTTGTTTTGCCTAGTTTTTCTTAAAGAAAGGAAAAAGGGAAAAGAAAAAGAAAAGATATAGGCTCCATGATTACTACATCTTTCCAGAATACATGACTTAACTTAGCATGCTTAGTTTTCATTCTTGCTCATCCTCTCTTTTCTTCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAATATGTCAGTTCCCGTTTCATGCTAGTTCAATTATTCCCCATGTAAACGATTCCATGCCACGCCTCTGCTGTCAAGCCTCGCTTCAGGCTTCTACTTCTTTTTCTGAAAATCGTGTGGCTGAAGAGAGGAGTTCTATTTCAATATCTTCCATTGAGATGATTCCAAAGATTGACAAGAGCGGCAAATTTTGCAGTCCGAGAGCTGCGAGAGAGCTTGCTTTGTAAGATCCACTACTTCCTTTGCACCTTTTTTTTTTCTCCAACATATGAATATCTCCTCTCTACCTTTTACCTATTCAAAAAGTTGGCTTACTCTCCAAGATATGGGTTAATAATTTGTTTAATTTCTAGACTTGTGATAAATTCTAATTCTACTAGATTATTCAATCGCAGGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCTGTTCGGCTCTTTGAGAAAAGGTTAAATGCCCGACGAGGTAATCTATGATAGAGACATGATACATAGTTTTCTGTTACCCCATATACTATTTGGTATGTGTGTTTTAATATAAAAAAGATCGTGTTGGGGAAATAGGTGTCACTCAAATATAAAATCCTGCTTGCTTTTTTTTGTTTGTACAATTCAGAATCAGGATATGAATTTGACAAGACATCATTGATGGAATATAATCATATGAGCTTTGGAGGTCCGCCAGTGACTGTGGAAACAATTGAAGAGGCAGATGAGCTCTTACGTAAGGATGAAAGGGATTCTACAATTGGTAAGCAATTATTTGACCTTCATATATAACACACACACACATTATTTCTTCTTCTTAATTCACCCATTACTTTATATTAAAAACATAATTGGCTAGAAGAGACAACTTTTCATTGAAAAGATGAAAAGTGTAAAAGAGAGACTAATGCTCAAAAGATACAAACTCTCTTAAAGTAGTAAAAAGGAAAAAGAAAAGCAGAAAAATGTAAAGATTCCACAAACATTAACAAATGATTGATTTACTTAAAAACTTAACAAAGAACTAATAGATTAACATCAAGCATCGGTATGAACGTTGAGTTGCCCTAGAAGTTGGAGTAGATCTCCAAATACTGCAAGTGTTGCTGACAAATTACAATCTTCAGTTTGGGTAACTTTTTTTGACAAAGAAGTTTCTTCTTCTGAGTGTGAACCAATTCTTTGTCAAGATGAGATGCCCACGTTATATCAATACTGTATTAGGTTCCATAAGAAAGCTCTACATCATGTGACAAAAAAGCTAAAGATTTGATTTGAGAAGGGCCATCATCAACTTGATTCTGCATATTGACTTCCACCTTGATTTTTTGAAACGGGGTGTTAGGGACCTGTTTTTCGAGCCATCGTTCGTCAGTAGCGATCTTCATCAAACTTGGCCTTTTTCCTTTTAGATGTGCTCCATCATTTTGTCTCTTGCTGCCTTTGTACTAGGGCTGATTGATGTAGCCTAAGCAACCTCAAGGAGTAATTCTCTAAGAACCAAGATTATTAATCTTTTTATTAGAATGGATAATGTGCTTCATACAAGACGATAAGAGTCCTATTTAAGAGTTTTATTACAAGTGGTGGGTAAAAATGGAATTAACCTAGAATATTAACTAATCACCCAATTAACCCCTATTCTTCTTACATCATTCTACCCTTCCAAAAAGAAAACTTGTTCTCGAGTTTTAAAAAGAAAAAAACTATGAAGCAAATAATTAATGAAATAAACTTGTTTAACGGAATATGACCAAACCAACCTCCTACGTTTCATACAAAAATATTATGATCAAATAGATAAGTTGAGACAAAAAAATCCAATATTTCCACCAAAAGAGGAACCTCTCCATCGGTCGTAAAGCCAAAAAAGAAATTTTCCTTCATGCTCATTCAAAACCACATTCAATGGATCAATCACTAAAACAACATTCCAAAGAGAATCGTTCAAGAATCACGTCTTCTCTATCATTCGCTTCAAGTTCTTCAACGATTCGATGATCCATTTCCACTGCAATCAATGTGTCGTTGTTCTTGTTCGATTTTTGCTCGGTGTTCGATCCTTTTTTCCAATCTTAGTTGGATTTTTCTTCACTTGAGACTATTTCCAAATCAACATTTTCAAATTCTTGTTTTCCTTCAATTTTATCGTCCAGATTTTCTATTTGAAAATTTTCCAACCATGATTCCTTTGTTTTTTCTTCCGTATATGAAATCAGTTTGTTCTTCAAATCTTGCTAATGAATTGATAGTTGATCGATATGTGAGCCATTTTCCCCAATGAATGTTGGATTTCTTTTGTTATTTTTTTTTATTTCCTCCAATGCTACGGCCTAAGGGATCAAATTAATCATTTTGTTTTTGTTTTTTTCTTCTAATCGTTCTTTGGATAAAAAAAAGAAGAAAAAAATAGTCATTTTGTTGGGAATTGAATATGTTTCAATCTCATAGTGGGTATAGGACTCATCCATTGATTTTCTTGAATCAACCTTTCTTAATCGTGTTTCATAACCAAAAGAGTAATTTTGAGTTTTGAGCTTTCTTCTAGGGTGGTAAAAACCCATTCTTGATGATTCTTTAGTTCATTGAACTCCCAAACTCTACGTTGATTTCTTAAAAATGGGTTTGATCGAATCATTGGACCGTTTGTCGATATTTTCGTTTTCTTATTCCATCCCAAGCTTCCTTAGAAATATCATTGGAGTCACTAGAATCACTAGAATCAAATTTCCTTTGTGGATAATGATAGGTTCTTTGAAAAGATTGTGTTAGTGATATATAATTAAATTTGCCTTCAACCACTAGCTTAAGCTTTTGGGTGAATTGGTGGTTTAATATGGTATCAGAGGCAGGTGGTCCAGGAGACCCTGTGTTCAAGCCCCTACATTGCTGTTTCCTCCCCAATTAAAATTGATTTCCACTTGTTGGGCCTTTTAGATATTTCGAGCCCACAAGTGAGGGGGAGTGTTAGTGATATATAATTAAATTTGCCTTCAACCACTAGCTTAAGCTTTTAGGTGAATCGGTGGTTTAATAGATTGAACATATGTAAAATTAGCAAGTTGAAATTCTTCTTCGGAATCATTTGAGTCAAAATTCCAGCACTGTTTTTGGAAGTAAAATTGATTTTCTTGCCTATACAAACTGCTGTATTTTTCTTGGACATCTTCTTTGATTGGTAATAGTCCTTTCTTGCTAAATTTTGAAAACAATTTGATTTCTTCTTTATTTCTTGAAATTTTAAGGGTTCCGCCAAATTAGATGTTTGTTGTTCGACAATAAGCACAACTCATGAAGCTCTCTCTTGTGATTGGTGTCACCAAAAGTTTCTTGATCTTCCACGTTTGTAGTCAACGTTGGCCTAGGTGGCCGCTCTGACACCAAAATGATGTAGTCTAAGTAACCTTAAGGAGAAATTATCCAAGAACCAAGATTGTAAATCTTTTTATTAGAATGAATAATGTGTTTCAGACAAGAGAGGAAGACTCCTATTTATAGAGTTTATTACAAGTGGTGGGTAGAAAGGGAATTAACCTAGAATATCAATTAATTACCCAATTAACTCCTATTCTTCTTACATTAGGGGTCCTCTGTTTTTTTGCTTTTTTTTTTTTTGTTTTAATCTAACACATTTTGTTGTACTTCTTTTCATTTCGTCTACTTCTTTTTCAGTTGTAATATTTCCCTCTTTTGGGCTTCTTTTTTATTCATTTTATTTCATCTACTTCTTTGGATTATTTCATTCGTCAATAAATTATTTTTTTATTAAAAAAAATGCAACCGAATCCAGAATTAGGGACAAAGGGTATTTTAATTTTTCCCATGTTTTTACTACAGTTGTTAATTCAGTATTGTCTAGCCTCAAAGTCCAATTTTATTGTGGTTAGTATTAAAGTTCTGTTTTCTGCATGACCGTATCTCAGAGGCAGAAATCCTCGCAGCCCCACCAAAGATGGTCTACAGCAAACTGATCTTACGGTAAACTTGGTTTATACTCCCCAACCTTTGGCAGAGGATGATAAGATAAAATTTTTGTATGACTTTCATCTATTTTATCAATATTATTCACTTTAAGAATGAAATAAGGCAAGCCATTTTCTTCATGGTTTTCAGGTTTACACGAAAACTTTTGGTTGCAGTTGGGGACGGATGGGACAGTCGTGCGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGGTCGTGTAAAAAGCTTGTTTTGGTTTGCTATTTTATTTTCTGATTCTCTTCTTTATGTTGTTGTTATGTGGTTAGAATACTCCTCCTGAATTGATCTTTGCCTCATAATCATAGCGCATGTGTGCTTTTTACAAGGCTTATAGAAATTTGAAAAGCTTCATGTGACGGTGACAAGGATGGAACCACAATCATATGTGCAATATTTTTCAGTCACGGATATTGTTGGATCTCTCACGTGAGTGTTGGAAAATGTGTGCTTTTCTTATTGAAGATTTGAGCTTAATGGTAAATGTCCTTGGACTCAACAAATAGTTGATGGCTTAGAGGAAAACAACGATCTTCCACGACCTTTTGAAGAGATGATTGAAAGTGAAAGTGTAACAGAATTAGAACCAGTTGCCTCTATACATAATTTGTTTCCGCTGAGCAAGGAAGTGGTAGCGATGCTTCTTGATTATGATTTATTCATCTGAGTAGTGACTAAGAAAGGGAAACCGCAAAGGAAGGGTGGGACCTCCTCGAGCAACAATAAGAAGCTCACTAGAGAAGTAAAAGCCTTGGTAGGTAGTTGGGAAATGGAAGCTCAAGCGGCATAAGCTAGTAATTCCTAGGGCTCTGAAGGTGATCTATGTTAATTCTCTCTTGGAACGTAAGGGGTCTTAATGCTCGCCCCAAAAGAGCGGTTGTGAAAGATTTGCTTGTGAAGTTCAATCCAGATGTGGTTATTCTCCAGGAGTCTAAAGTTAGTGTTGTCAATCTTTATTTGGTGAAATCGGTTTGGAGTAGCCATTTATTGGGTGGGCTGCTTTAGTGGCCTTTGGTTCTTCCGACAGTATCCTTTTAATGTGCAAAGAGGAATCGATCACGGTGGTTGACTCTATTCAAGGTTAGTTTTCTATTTCTACTCTTTGTAAGTTTAATGCTGGCTTCTTTGGTTGGATCACAAGCGTGTACGGTCCTTCATCCTATAAACTTAGAGACCAGTTTTGGTGGGAGCTTTTTGGCTTATATGGTGTGTGCTATGAGAACTGGTGTATAGGGATGACTTCAATGTAGTGAGGTGGTTAAATGAGAAGAGCTCTGGCGTTCGCGCTACTAAAAGTATGGTTCTTTTTAACAGATTGATTGAGGATCTGGATCTTTTGGATATCCCCTTTCGGAATGGCCTGATGTCTTGGTCCCAATCTGGGATTAGGCCGGTTGCGTCAAAGCTCGACAAATTTCTTCTCTCTAAGCCTTGGGTTGATTTCTTTAAAGAAGTTAGTGTGGAAAGACGTATGCATACCACCCCAGATCACTTCCCGATTCTTTTGAAACTGGGGGTGCAGTCTTGGGGTCTTACCCCTTTTAGATTTGAAAATGTTTGGTTGGACCATCATCTCTTCCTAAAAAACGTCGAGAATTGTTGGGGTAGTTTGATTGTTGATGGCTGACCTATTTTTTACTTTATGGAGAAACTAAAAGGACTGAAAGTCCTCTTAAAGGGCTGGAATAAGGAGACGTTCGGCAACATTTTCTCCCAAAAACAATTGCTGATTGATAAGATTAACTCTCTTGATTCGTTCGAAGAGTCGGACTTGTTCATTGAGGAAGGTGCTAGGGAAAGAGAAGATTGTAGAGGGGCTTACTTGATTTGATTGTTAAAGAACAAAAATTATGGATTCAAAAATCTAAACTTCAATGGCTTAGAGAGGGGAAGAAGAACTCAAGTTTCTTCCACAGATGGGTTTCGACTTGTAAAAGTAAAAGTCTTATTTCTTCTTTTATGAGTATTGGTGGGAAGGCTCTTGTCACTGAGAAGGAGTTCGTGGATGAGATCCTTAGTTTCTTTTCAAATTTGTATGGCATAAGACCTCTTTGTCGTTCATTTGTGACGGTCTCAACTGGAAAGCCCTTAGCTTGCAGGATTCTAGCTTACTTGAGGCTCCCTTTATAGAAAAAGAGATTAGAGAAGCTGTCTTTGAGATCGGTTGTCTTAAATCTCCCGGTCTTGATGGCGTGATGGGGGAGTTATATAAAAAGTCTTGGAACATTTTGAAGTCCGACCTAGTAAGGGTGTTCCAAGATCTTTTTAAAAACGGAATCATTAACAGAAGCTGCAATGAGACTTATGTTTGCCTCATCCCCAAAAAGAAAAAGGCGGCCTGTTTTAGTGATTTCAGACCCATAAGCTCAGTTACCTCCTTGTATAAAGTTATTTCCAAGGTGCTTGCAACAAGACTTAAAAAAGTCCTTCCATCTATAATTAATGATTCTCAAATTGTCTTTGTGGAGGGGTGACAAATTCTTCATTCTATTTTGATTGGTTCTGAGGCTGTTGATGAGTGGTCTTTAAAAGGCAGAAAAGGTGTTCTCTTGAAGCTTGATCTGGAGAAAGCCTATGACTAGGTGGACTGGTCTTCTCTTGATATCCCATGAAACTTAAAGGCTTTGGTAAGAGATGGATTTGGGGCTGTTTGTCGGCGACTAACTTCTCGATCATTATCGATGGTAGGCCTAGGGAAATATTTTTCCTAAAAGAGGCATTCGTCACGGCGATCCTCTTGCCCCTTTTCTTTTTACGATCGTGGGAGATGCCCTATGCTGCCTTATTCACTATCGTAATGAGGAAAGGACTATAGAAGGCTTCCATTTTGAGAACTTGTTAGATGAATTAACCCACCTTTAGTACGCGAATGATACTCTTCTGATAGAACACCAAGTAATGGTTCTATTTGTTCATTAAGCAACCAAACTATTACAAAATACAATACTCAAACTAGTCTTGAAAATACAGAACAAACAAGTACCGTTACAGACAACAACCAAGTTCAAAATAAAACATTCAAACATCAAAAGTAATTTACGATAATGGAAAACACTTTCTAAGATTAAAGTAACAGAACAACTTCTGTAATTCTGCTCTCCAGAAACTACAGCCCCTCCACTTCCAGAAACTGATTAACCACCCCATCTTTCCTTCCATCTCTCCCTTTTAACCTCCCCCCATGTAACTAACTGTGGTCTCCACTAAGGTGGTTTCCACTTCCTCCACTTCCATCACCTATGAACGTGCAGTTCCACTTGTCTTTCTTCTACTATATTGTATTACAATTGGTGGTCTGTCATCTTCTCTTTTCTTCTTGAGAAGATGGAAATTTGGAGACATGGTGGGAGGTGATTAATATCCTTCTTTTGGGAGCTGGTTTATCCCTTAACAGCTCCAAAACATCTTTGACCGGTATTAAGTTTAACAATGATGACTTGGCTTCTTATACTAATACCTTGGGGTGCTCGGTGGATACCTTTTGGGCTTCTCTATTGGAGGGGGTCCTAATAGAAAAGAGGTGTGGAATGCCCTTGAAGAGCGATTCAGATATAAAATTGATAGGTGGAGGATTATGTCCCTCTCCAAAGGGGGTAGGCTAACTCTTATGCAATTGGTTCTCAACGGCCTTCCTTGTTACTTATTTTCCCTTGCACAAGCTTCGGTTGGTGTTATCAATAGACTGGAAAAGATGATCTGTTATGGTGGCTTTGAGATTGGCTCGTTTAGGCAAAAGAACACTACTCTTGTCACTAAATGGCTTTGGAGGTTTGGTAAGGAAGAAGCCACTTAATGAAGGTGCTTAATTGTGGCCATTTACGGCTTAGAGGAGAATGGGTGGTCTACTAAAGATCCGGGAAGGTCTTATAGATTGTGGGCCGGTATTTTGAAGCATAAGGAGACTTATAAATTCGCAGCTTGCAGAAAAATTATGTGGTGTGGAACAAAAATCAGATTTTGGAAAGATGGTGTGGCGTGGAACTGCTTGCAGAAAAATTCCCCTACCTTGTTCTCCTTGGCATTGTACAAGGATGCTTTCGTGGCTGAATGTTGGTGTAATGTTACTCATTCATGGAACTTGGGCCTTAGAAGAAATGTGCTCGATAATGAGCTTGACAACGTGGCCTCAGTTCTGAAAATTCTTCATCCTTGGCCCACTCAGATGGTGGTGACATCTTAAATGGATTCCTAACTTTAATGGCAAAAAAAATCCAGCACACTATGTTCAGCCCTTCGATGTGCTGCCTTTGTTTCAAAGATGAGGAGACCCTAAACCACTTATTTTTGCATCGTCTCTTTACTAGGAAAGCTTGGAACAATTTGTTTAGAATTTTTGATTTGGAGCTGTCTTCCTAGTAAGGTTGATAGTTGGATGCTGGAAGGGCTTAACATTAGAGGTTATAGTCCGAAAGGAAACATCGTATGGAGATGTGCTACCCAGTCCCTTTTGTGGCGCATTTGGAAAGAAAGGAATAGTAGAATTTTTTAAGATAGCTATAACTCTTTTGATTCTTTTTAGACTGTATTGCAATACACAACTTCTTAGTAGAGTACAAATTACACCAACGACTTTTGTAATTACAGCCTTTCTATGATTTTCAACAATTGGAAGGTCATTATTCATTAGCTTTTGATGGGGAGGGCCCTCTTTGTTTCCAAATTTATTTAAAGATTTTGATTGTTCAATCTTTTAAAGTGAAAGTTGCATTTCTGCTAAACATCATCGACCCAAACCTTATAAGGGTTCCTCACCTTTTTACTTCATTCACACTAATGTGTGGGTCCGTCTAAAGTGTTGGCTTATAGTGGTAAGCGTTGGGTTGGTTTATTACCTTGATCACACTTGTTTAACTTGATTTTACCTTTTTAACAAAAAAAATGAAGGTAGAAGAGGTTTTTGTTTGGTTTTATATTATGATTGAGACCTAGTCTCAAACTAAAATCCGCATTCTTCACTCTGATAATAGTGCTGAATATTTTAACGAACAATTAACTTATTTTTTGCAAGATAAGGGTATTTTTCCATCAAGCTACATGTCAAGATACTCTTTAGCAAAATGACGTTGAGCGAAAAAATAGACATTTACTTGAAGTTGCTCGTGCCCTTATGCTTTCTATGCATGTACCAAAATATTTGCGGGGTGATGCAGTCCTTACTGCTGCATACCTCATAAATCAAATGCCAACCAAGGTTTTGAATTTTAAAACTCCTCTGAATCACTTCAAAACGGTTTTTTTTCCTACTGTTAGGTTGTTTTCTGACTTAACAATAAAAGTATTTGGGTGTATTGTTTATGTTCATACTCTTTACCCTATACTAACTAAACTCGATCCTCGAGCCGTTAAATACATTTCTGTATGCTATGTCTTCCATAAGAAGGCTTTCAAATGTTTTGACCCTTCGACCAAAAGGTTTTTGGAGAGTATGGACGTGTCTTTCTTAGAAAATCAAGCTTCTTTAAGCCCAAATTGTCTTCAAAGGGAGACATCTAACCTCAAAGATAATTTCTAGGACAATTCACTTACCCCAAACATCATTGGTCCTGAAATTATGAGATATAATCCTTTGATACCAAGTGTGGAAAGTTCTTTAGGGGGAGAAACACTACAAAAACCTGAACTTCAGATTTATACTAGAAAAAACGCGCCTCAGAGTAATCGAGAATAGATAGTTGATCTATCATAGGACCAATCTAATTCTTCGATGAATGATTCTGCAGATTCAGGTAACATACATCTCCTTCTCATAATTCTCCCAGTACTTCTCATAATTTTCCTAATTCTCCCAGTACTTCTCATAATTTTCCTAGTTCTCCTTCTCATAATTCCTTACCCAATGTCTCTAATCTTGACATTCCAATTGCCCATAGGAAAATTACCCGTAAAGGTGCCAAATATCCGATTGCAAACTATCTTTCTTATCACAGATTATCTGACAGTCATAAAGCCTTTGCATCCAAAATAAACAACCTATTTGTTCCAAGGAATATACAGGAGGTCCTAAATGATTTGAATTGGAAAGTGGCAGTAATGGAAGAGATGAATGCGCTGAAACAAAACTGCACATGGGACATAGTTGAACTACCTAAAAACAAGAAAACGGTTGGATGTAAGCGAGTGTTCACTGTAAAATGTAAAGCTGATGGTAGTATTGGAAGGTACGAGGTCAGATTGGTTGCTAAGAAATTTACTCTGACCTATAGTGTTGATTATCAAGAAATATATGCTCCAGTTGTTAAAATTAATTCCATAAGAATTTTGCTATATGTTGCAGTTAATTTTGATTGGCCACTTTATCAATTGGATGTTAAGAATGCCTTTCTCAATAGGGATCTTGAAGAAGAGGTATTTATAGATTTGCTACTTGGTTTTGAGGTAGATCTCAGGATTAACAAAGTGTGAGTTAAAATAATCATTATTTGAGTCTCCTAGAGTCTGGTTTGAACGTTTTAAAAAAGCATTCACAAGCTATAGATCTAGTCAAAGTCAAGTCGATCATACTATGCTTTATAAACATGTAGGAAATGACAAGGTTATGGTTTTGATAGTTGACGTTCATGATATCATTCTTACCGGCAATGATGAGACATGACTGACTTTCTTGAAGAAAAAGTTAGTTGATGGTTTTCAAATCAAAGACCTAGGAACTATGAAATATTAGCTAGGCATGGAGTTTACTAGGTCCAGAAGTGACATTCTTGTCAACCGAAGGAAGTATATTTTTTATCTACAGAAAGAAGTAGGTTTACTTGGCTGTAGGGTGGTTGAAACTCCTATTGGGCAGAACTTGAAATTGGAAGTTGCTGTTGAAAAAGAAATAAAAGAAAAAGAGAAGTATCAGAGACTTGTGGGGAGACTTACATATCTCACTCACACACGTCCTGACATCACTTTTGCAGTTAGTACTTAGTATGGGAAGTCAGTTCATGCATGCTCCTGGATCAGCTCACTTTGATGTTGTTCACAGAATTCTAAGATATTTGAAAAGTACTGATGCAATAAGGCAGTTAGCTTGTTAGTTTGCTATTTCCTGTTATTAGTTGTTATTTCCTGTTATTAGTTGTTATTTTCTGTTATTAGTTGTTAAGAGGTTAGCTTGTCAGTTTGTTAAAATAGTTAATCTGTTTATAACTAATCAGCTGTCAAAACTGATTAGTTATACTTGTAACTACCCCACACATCAATAAATAGCCATTCTCCAATTGAGATTGGCAGAGAATTCATTTGAGAAATTAAGTCCAACTTGAATTACACGAAGTGGTATCAGAGCAGTCTCGATCCTTAGACGGATGGCTGGCCGGAGAAGAATCTCTGTCGCGGGGAATAACTGCGAGCAAGAAGAGGTGGAAGAGACCGCCACCCTCTCTTCAAGGACAACCACGGTACGCTTGCTGGCCGTCGAAGACTCCTTGGGAGATTTACATGACTGAACAGAGTAATGGACAACTTAGACTCACCCAAAGAATGGACGAACTACCGGCAATGGCAAGGAACGAGGATTATGACCGGAACGCAGGAAATAGAGGAGGCCGACGGGCTCGAAGGAACTTCAGGAACTGGCCCAACCAAAGAAATGATCAAAGAAGGAGACCGGGAGACATCCCACTACGACACGCCGACGATGATGAGCAAGACGACGAGGAGGAGTGGCAGAACGTGCAAGATTACGATTCTTCCAGTGGCGACGACCAAGGAAATATTTGGAACGACAACGAAGAATTTCGAATGGCTCACGGCTATAGAGGACACGAAGCACGACGAGAGATTCATTACGACCACAAAATGAAAATTGACCTCCCAACCTATAATGGTAAACGGGATATCGAATCTTTCTTGGATTGGATAAAAAACGCCAAGAACTTCTTCAACTACATGGACACTCCGGATAGAAAGAAAGTACACTTGGTGGCCCTGAAATTGAGATGAGGAGCCTTGGCATGGTGGTACCAATTGGAGATAAATAGACAGAGATTCGGCAAACCACCCATACAATCATGGGAGAAAATGAAGAAGCTTCTGAAGGCGTGTTTCCTACCCCCAAACTACGAACAAACGTTGTACAGCCAGTACTAGAATTGCCGCCAAGGGAGTCGAACCATAGCCGAGTACATTGAAGAATTCCATAGATTGAGTGCAAGGACCAACCTGAGTGAAAATGAGCAACATCAGATTGCAAGGTTCGTTGGTGGGCTACGATTCGACATCAAAGAAAAAGTGAAGCTGCAGCCCTTTCGCGTCCTATCTGAAGCAATTTCCCTCGCGGAGACTATAGAGTAAATGATGACGGCACGCACGAAAAACGCCACCAAGAGGGGCACATGGGACAGAAATACATCCAGACGGCAATCTTACAGCAGAAAAATAGATGACACACCAGCAACATCCGTTGCAGAGAAGAGCAAGGAAGTTGATGCCCAAGAGACGAGTAAAAAGAAGGCCGGAGCTGTTACAGAAAAGAACCAGAACAACTACACTCGCCCATCCTTAGGGAAGTGCTTTTGGTGTGGTGAGCTCGGACACTTATCCAACAACTGCCCCCAAAGAAGAACCATAGCGTTGGCAAAAGAGGAAGACTATGGCACAGAAGAAGAGATAGAGTTGATTGAAGCAGATGATGAAGAACGAATCTTCTGTGTTATTCAGAGGGTCCTCATTGCCCCCAAAGAGGAAACGACCCCCCAACACCACAGCCTATTCAAAACAAGATGCACCATCAACGACAAAGTATGTGACATTATAATTGACAGTGGAAGCAGTGAGAACTTTGTAGCAAGAAAGATTGTGACCATTCTCGGCCTAAAAACAGACCCTCACCCTGATCCTTACAAAATAGGATGGGTGAAGAAAGGAGGAGAGACAACAATCAACGAAATCTGCACTGTACCCCTATCCATCGAAAGCAGCTACAAAGACCAAATTGTGTGTGATGTGATAGACATGGACGTGTGCCATTTACTCCTAGGCAGGCCGTGACAACACGACACCCGAACCATACACAGGGGAAGGGAAAATACCTATGAGTTCCAGTGGATGGGAAGGAAAGTAATTCTACTCCCATTAACAAAGAAAAACACCGAAGGCCTAAAGCAGAAGAAAAAAGGACAACTCTTCATCACAGTAGGCGGGAAGAAGATTTTGAGGGAAAGGGAGCAAGACCTTTTGGGACTTGTGGTGGTTGACAAACCTCAAAAGAAAGAAGGTGAGACTATTGACCCCAGATTAGAGAACTTGTTTACAGAGTTCCGTCATCTAAAGAGAGACCCGCAACGATTGCCACCATTTCACGACATCCAACATCAAATCGATCTTACCCCAGGAGCCTCACTACCTAATCTACCCCACTATAGAATGAGCCCAGAGGAGTATAAAATCTTACATGACCACATTGAAGACTTGTTGAAGAAGGGTCACATCAAGCCTAGCCTAAGCCCATGCGCTGTACCCGCACTACTCACACCCAAGAAGGACGGAAGTTTGGAGAACGTGTGTAGATAGCAGAGCTATCAACCGAATCATTGTAAAGTACCAGTTCCCTATTCCTCGAATTGGAGACTTATTGGATCAACTAGGCAAGGCTACCATCTTTTCAAAGGTTGACTTAAGAAGTGGTTATCACCAAATAAGAATCAGGCTCGGGGACGAGTGGAAGACAACCTTCAAAACAAATGAAGGATTATTTGAATGGTTGGTGATGCCCTTTGGCTTATCCAATGCGCCGAGCGCCTTTATGAGGTTGATGAACCAGGTGCTACATCCGTTTCTAAACAAGTTCATAGTGGTTTACTTCGACAACATCCTCGTGTATAACAATAGTACTGAAGACCACATCCAACACTTAAGAAAACTATTTCGAGTCCTGACCGAAGCTGAACTATACATTAATCAAAAGAAATGTACATTCCTCACTTAGGAAATTGTCTTTCTCGGCTATCAAGGGAGGGAAAGTAAGCATGGAACCAAAGAAAACAGAAGCCATACAGTCTTGGCCAATACCAACCTCCATCAAAGAGGTACAAGCTTTCCTTGGTTTGGCATCCTTTTACAGAAGATTCATCAGAAACTTCAGTTCAATAGTGGCCCCCTTAACCGACTGCCTAAAGAAAGGGAACTACAAGTGGAACGAAGAGCAACAATAGAGCTTTGAAGAGATAAAGAGAAGACTAACTTTCAGCCCTATCCTACAATTGCCAGACTTCACATCACCATTTGAAGTAGCTGTTGATGCTTGCGGAATCGGAATTGGAGCTGTGTTATCACAGCACGGCCACCCTATCGAGTACTTCAGTGAGAAGCTATGTACATCAAGACAGTTCTGGAACACTTATGAACAAGATCTTTATGCCCTTGTTCGAGCACTCAAACAATGGGAACATTACCTCCTATGCAAGGAATTTGTACTCCTAATGGACCACTTCTCTTTGAAATATCTCCAATCACAAAAGAATATTAGTCGGATGCACGCACGATGGATTTCCTTCCTACAAAGATTCGACTTCGTTATTGAACACCAAGATGGTATCGAACAAGGTGGCAGACGCACTATCCAGGAAAAGCTCATACTTGCTATTCTATCTATGGGGATCGAGGCATTCAAACACCTACCTAACCTATATGAGGAGGACATTGATTTCTCCGAGACATGAGCCAAGTGCAGCAACTACACCAAACCTGAAGACTTCCATATAATGGAAGGGTATCTATTCAAAGGGGATCAACTGTGTATCCCCCACACATCACTTCGAGAAGCACTGCTAAAAGAGGCTCATTCAGGAGGATTGGCTAGACACTTCGGACGAGACAAAACCTTTGAAATAGTCTCTAAAAGATATTACTGGCCACAGTTAAGAAAGGACTGTAACAACTTTGTTAAAAGGTGCCCCGTTTGCCAACGAGCTAAAGGTTCAAGTACAAATGCAGGCTTGTACTCACCATTACCTACCCCAATTTCCATTTGGGAAGACCTGTCAATTGATTTCGTACTCGGGTTACCAAAAACACAAAGACAGTAGACTCGGTCATGTTTGTAGTCGGCAGATTCAGTAAAATGGCACACTTTGTGGCTTGTAAGAAGACAAATGATGCCACCTACATAGCTAACCTATTCTTTCGGGAGATAGTTCAGCTGCACGGGATACCAAAAACCATTGTATCTGATCGGGATGTCAAATTCCTAAGTCACTTTTGGAAAACACTATGGAACAAATTTGACACAACTTTGAAATATAGTACGACAGCACACCCACAAACAGATGGCCAAACAGAAGTCACAAACAGAACCTAAGCAACTTGATGCGTTGTCTCAGTAGATCCAAACCAAAGCAGTGGGATTTAGCTCTAGCTCAAGTAGAATTTGCATTCAATAATATGAAGAATAGATCAACCGACAGATGCCCATTTGAGGTTGTATATACAAAACAACCAAGACTAACCTTTGATCTAGCATCACTTCCTACAACCATGACACTAGTTCAGAAGCAGAAAAAATGATAGAGAAAATCCAGAAATTACAGGAGGAAGTCCACAACCATTTGAAAGAAACAACCCAATCCTATAAACAGACAACTGACCGAAAAAGAAGACAAATTACCTTTTCTGAAGGAGACTTAGTGATGATTCACCTAAAAAAAAATCGGTTCCCAACTGGAACATACAATAAATTGAAAGATAGACAATTAGGACCGTTCCGTATCCTAAAGAAAGTTGGGGATAACGCTTACAAAATAGAGTTGCCACCGGATTTACATATTCACCCTGTTTTCAATGTGGTAGACATAAAGCGATACTACGCTCCAGACACTTTCAACCTTGCAAATTGAAGTCACTCGGGACGAGTTCAATCCAAGGGGGGTGGAATGATGCAATAAGGCAGTTAGCTTGATAAGGCAGTTAGCTTGTTAGTTTGGTATTTCCTGTTATTAGTTGTTATTTTCTGTTATTAGTTGTTATTTCCTGTTATTAGTTGTTATTTCCTGTTATTAGTTGTTGAGAGGTTAGCTTGTCAGTTTGTTAAAATAGTTAATCTGTTTATAACTAATCAGCTGTCAAAACTGATTAGTTATACTTGTAACTACCCCCACACATCAATAAATAGCCATTCTCCAATTGAGATTGGCAGAGAATTCATTTGAGAAATTAAGTCCAACTTGAATTACACCAAGTACTCTAGGAAAAGGCATATTGTTTTAAAAACATGACCACTAAATGTCGAAGTGTACACTGATACTGATTGGGTAGGTAGTACAACTGATAAAAGAGCCACTTCTGGTTATTGCTTTTGTTGGAGGAAATCTAGTTACTTGATGAAGTAAAAAATAGAGTGTGGTTGCAAGTAGCGCAGAAGCAGAATTTAAGGCCTCAACCCATGATATTTGTGAGGGCGTATGGATAAGAAGACTATTGGAAGAATTGAGATTCTCCCAAAAAATGCCTATGCTCATTTATTGTGATAACAAGGCAACAATTTCCATTGCCCACAATCCAGTCCTTCGTGATGAAGGTGATAAACACTTTATGAAGGAGAAGATTGTTCAAGGAATAATATGCATCCCTTATCTTTTGAGAACAGAACAAATTGCAAATGGGTTAACTAAAGGTCTTCCAAAATGGCTATTCAACAACTTAATTGAAAAGTTGGCTATGGATGATATCTTCCAACCAACTTGAGGGGGAGTGTTGATTATTTCCTTATTGTTAATATTTTCATTGTATTTAAGATGCATTTGTGTATTTGTTTTTTCCTTTTTTGTATTTTCCTATTTTGTAATGGGTATTTCTTCTATTTAATAAAACCCTTTCTTTCGAAGAGAAATAACAGAAAATACAATCTGCACAACATGTTTTATTATTCTATTCCATAAATCATTCCAGCTTCAGACATAGCAGTTGCACGGATACAAAGCAAAGATCATGCACTTGGACTTGAACTTCTTGAATTTGCAAATTTTTTAGAATGTTCAAGATTTGTAATAGTTAAGGAGATAAATATCTCATGCATTCGTATATATTTCAGAACAAGCCAGCAGGATGGATTCTAGAGCTTTGTATTCTCCACTTGGCCATGTCTGAAATAACGGTTATTGGAACAAGGAATCAAATTGTCATTAATGAGGTAAATATGTCTTGAGATGTTTTACTTGAAGGTCAAAACTAACATCTCTTATGTCTGTTTGATATCTGTCTAAGATCAATCCCTTTTCTAACATCAATTATTTTTTTGTTAAAAAAAATATATCGTTCTTGGTTATTGATGAAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCTCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAGATTGATTCAACGCCTGCTCGAGAGAAGTAA

mRNA sequence

ATGTTGGATTATCCATCCGATACGGCTTACTCACCACCCAACAAGTTGGAGGAGTTTCCTTCCTCTTCCACTAGGAAATGGCTTTGCCTCCAAATCCCCTCTTTCAAAACCGACATTGGACTCGGAGATTCCCATGATGCTGACCAACCTCACGAACAGTATCAAGTGGAGCAGGAGCAGCCTCATGGTTTGAAATTTGCGCCTGGAGCTTCTGCCCACAGGACTCGACTCTTCACCGTTGGGGATAAAAAAAACACTAATGAAACTAAAAGCTTTGTTCTTCCTGATACTCCTTCCCTTGCGAGCTTGGAGTTGCTCCTGAATTCAACAAGCTTAAGAGCTTACGGGCTGATTGGGGAGAGGAGTTGGTTCCCGTTTCATGCTAGTTCAATTATTCCCCATGTAAACGATTCCATGCCACGCCTCTGCTGTCAAGCCTCGCTTCAGGCTTCTACTTCTTTTTCTGAAAATCGTGTGGCTGAAGAGAGGAGTTCTATTTCAATATCTTCCATTGAGATGATTCCAAAGATTGACAAGAGCGGCAAATTTTGCAGTCCGAGAGCTGCGAGAGAGCTTGCTTTGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCTGTTCGGCTCTTTGAGAAAAGGTTAAATGCCCGACGAGAATCAGGATATGAATTTGACAAGACATCATTGATGGAATATAATCATATGAGCTTTGGAGGTCCGCCAGTGACTGTGGAAACAATTGAAGAGGCAGATGAGCTCTTACGTAAGGATGAAAGGGATTCTACAATTGAGGCAGAAATCCTCGCAGCCCCACCAAAGATGGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGGGGACGGATGGGACAGTCGTGCGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGAACAAGCCAGCAGGATGGATTCTAGAGCTTTGTATTCTCCACTTGGCCATGTCTGAAATAACGGTTATTGGAACAAGGAATCAAATTGTCATTAATGAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCTCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAGATTGATTCAACGCCTGCTCGAGAGAAGTAA

Coding sequence (CDS)

ATGTTGGATTATCCATCCGATACGGCTTACTCACCACCCAACAAGTTGGAGGAGTTTCCTTCCTCTTCCACTAGGAAATGGCTTTGCCTCCAAATCCCCTCTTTCAAAACCGACATTGGACTCGGAGATTCCCATGATGCTGACCAACCTCACGAACAGTATCAAGTGGAGCAGGAGCAGCCTCATGGTTTGAAATTTGCGCCTGGAGCTTCTGCCCACAGGACTCGACTCTTCACCGTTGGGGATAAAAAAAACACTAATGAAACTAAAAGCTTTGTTCTTCCTGATACTCCTTCCCTTGCGAGCTTGGAGTTGCTCCTGAATTCAACAAGCTTAAGAGCTTACGGGCTGATTGGGGAGAGGAGTTGGTTCCCGTTTCATGCTAGTTCAATTATTCCCCATGTAAACGATTCCATGCCACGCCTCTGCTGTCAAGCCTCGCTTCAGGCTTCTACTTCTTTTTCTGAAAATCGTGTGGCTGAAGAGAGGAGTTCTATTTCAATATCTTCCATTGAGATGATTCCAAAGATTGACAAGAGCGGCAAATTTTGCAGTCCGAGAGCTGCGAGAGAGCTTGCTTTGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCTGTTCGGCTCTTTGAGAAAAGGTTAAATGCCCGACGAGAATCAGGATATGAATTTGACAAGACATCATTGATGGAATATAATCATATGAGCTTTGGAGGTCCGCCAGTGACTGTGGAAACAATTGAAGAGGCAGATGAGCTCTTACGTAAGGATGAAAGGGATTCTACAATTGAGGCAGAAATCCTCGCAGCCCCACCAAAGATGGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGGGGACGGATGGGACAGTCGTGCGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGAACAAGCCAGCAGGATGGATTCTAGAGCTTTGTATTCTCCACTTGGCCATGTCTGAAATAACGGTTATTGGAACAAGGAATCAAATTGTCATTAATGAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCTCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAGATTGATTCAACGCCTGCTCGAGAGAAGTAA

Protein sequence

MLDYPSDTAYSPPNKLEEFPSSSTRKWLCLQIPSFKTDIGLGDSHDADQPHEQYQVEQEQPHGLKFAPGASAHRTRLFTVGDKKNTNETKSFVLPDTPSLASLELLLNSTSLRAYGLIGERSWFPFHASSIIPHVNDSMPRLCCQASLQASTSFSENRVAEERSSISISSIEMIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGWILELCILHLAMSEITVIGTRNQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTPAREK*

Homology

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BLAST of Chy5G090550 vs. ExPASy Swiss-Prot
Match: Q18B61 (Transcription antitermination protein NusB OS=Clostridioides difficile (strain 630) OX=272563 GN=nusB PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-05
Identity = 24/54 (44.44%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 320 LELCILHLAMSEITVIGTRNQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI 374
           +++ IL L++ EI  + T N++ INEAV+LAK +CD  +P+ ING L + V +I
Sbjct: 114 VDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDEI 167

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BLAST of Chy5G090550 vs. ExPASy Swiss-Prot
Match: A7GWZ7 (Transcription antitermination protein NusB OS=Campylobacter curvus (strain 525.92) OX=360105 GN=nusB PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-04
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 302 KIEKVIPPTWKNKPAG--WILELCILHLAMSEITVIGTRNQIVINEAVDLAKRFCDGAAP 361
           ++++++ P  K K      I+EL IL L + E+   GT   ++INEA++LAK     +AP
Sbjct: 58  ELDEILKPYLKEKDIERIGIVELAILRLGVYEMKFTGTDKAVIINEAIELAKELGGDSAP 117

Query: 362 RIINGCL 367
           + ING L
Sbjct: 118 KFINGVL 124

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BLAST of Chy5G090550 vs. ExPASy Swiss-Prot
Match: B1WXY6 (Transcription antitermination protein NusB OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=nusB PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-04
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 324 ILHLAMSEITVIGTRNQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIK 375
           IL LA++EI  +    ++ INEAV+LAKR+ D    R ING LR F   IK
Sbjct: 157 ILRLAVAEILFLDVPEKVSINEAVELAKRYSDDDGYRFINGVLRRFTDHIK 207

[Close]

BLAST of Chy5G090550 vs. ExPASy Swiss-Prot
Match: Q04M45 (Transcription antitermination protein NusB OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) OX=373153 GN=nusB PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-04
Identity = 30/90 (33.33%), Postives = 47/90 (52.22%), Query Frame = 0


Query: 289 LVAVGDGWDSRALKIEKVIPPTWKNKPAGW------ILELCILHLAMSEITVIGTRNQIV 348
           L+ +  G  ++  +++K I    K   AGW      ++E  +L L + EIT   T   + 
Sbjct: 52  LIDLVSGVQAKKEELDKQITQHLK---AGWTIERLTLVERNLLRLGVFEITSFDTPQLVA 111

Query: 349 INEAVDLAKRFCDGAAPRIINGCLRTFVKD 373
           +NEA++LAK F D  + R ING L  FV +
Sbjct: 112 VNEAIELAKDFSDQKSARFINGLLSQFVTE 138

[Close]

BLAST of Chy5G090550 vs. ExPASy Swiss-Prot
Match: B5E1P3 (Transcription antitermination protein NusB OS=Streptococcus pneumoniae serotype 19F (strain G54) OX=512566 GN=nusB PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-04
Identity = 30/90 (33.33%), Postives = 47/90 (52.22%), Query Frame = 0


Query: 289 LVAVGDGWDSRALKIEKVIPPTWKNKPAGW------ILELCILHLAMSEITVIGTRNQIV 348
           L+ +  G  ++  +++K I    K   AGW      ++E  +L L + EIT   T   + 
Sbjct: 52  LIDLVSGVQAKKEELDKQITQHLK---AGWTIERLTLVERNLLRLGVFEITSFDTPQLVA 111

Query: 349 INEAVDLAKRFCDGAAPRIINGCLRTFVKD 373
           +NEA++LAK F D  + R ING L  FV +
Sbjct: 112 VNEAIELAKDFSDQKSARFINGLLSQFVTE 138

[Close]

BLAST of Chy5G090550 vs. ExPASy TrEMBL
Match: A0A5D3DDJ4 (NusB/RsmB/TIM44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G001130 PE=3 SV=1)

HSP 1 Score: 574.3 bits (1479), Expect = 3.8e-160
Identity = 299/373 (80.16%), Postives = 314/373 (84.18%), Query Frame = 0


Query: 12  PPNKLEEFPSSSTRKWLCLQIPSFKTDIGLGDSHDADQPHEQYQVEQEQPHGLKFAPGAS 71
           PPN L     S+   +   +  +FK DIGLGDSHDA QP EQYQVEQEQPHGLKFAPGAS
Sbjct: 4   PPNPLFSTSFSTLHSF---KSSAFKIDIGLGDSHDAGQPREQYQVEQEQPHGLKFAPGAS 63

Query: 72  AHRTRLFTVGDKKNTNETKSFVLPDTPSLASLELLLNSTSLRAYGLIGERSWFPFHASSI 131
           AH+TRLFTVGDK                     ++    +      I     FPFHASSI
Sbjct: 64  AHKTRLFTVGDK---------------------VITTRPNFHFSNHISGICQFPFHASSI 123

Query: 132 IPHVNDSMPRLCCQASLQASTSFSENRVAEERSSISISSIEMIPKIDKSGKFCSPRAARE 191
           +PHV +SMPRLCCQASL+ASTSF ENRVAEERSSIS+SSIE IPKIDKSGKFCSPRAARE
Sbjct: 124 VPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVSSIETIPKIDKSGKFCSPRAARE 183

Query: 192 LALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEA 251
           LALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEA
Sbjct: 184 LALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEA 243

Query: 252 DELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTW 311
           DELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAV DGWD+RALKIEKVIPPTW
Sbjct: 244 DELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVVDGWDNRALKIEKVIPPTW 303

Query: 312 KNKPAGWILELCILHLAMSEITVIGTRNQIVINEAVDLAKRFCDGAAPRIINGCLRTFVK 371
           KNKPAG ILELCILHLAMSEITVIGTR+QIVINEAVDLAKRFCDGAAPRIINGCLRTFVK
Sbjct: 304 KNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVK 352

Query: 372 DIKEIDSTPAREK 385
           DIKE DSTPAREK
Sbjct: 364 DIKETDSTPAREK 352

[Close]

BLAST of Chy5G090550 vs. ExPASy TrEMBL
Match: A0A1S3BNR2 (uncharacterized protein LOC103491638 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491638 PE=3 SV=1)

HSP 1 Score: 570.9 bits (1470), Expect = 4.2e-159
Identity = 293/351 (83.48%), Postives = 305/351 (86.89%), Query Frame = 0


Query: 34  SFKTDIGLGDSHDADQPHEQYQVEQEQPHGLKFAPGASAHRTRLFTVGDKKNTNETKSFV 93
           +FK DIGLGDSHDA QP EQYQVEQEQPHGLKFAPGASAH+TRLF VGDK          
Sbjct: 60  AFKIDIGLGDSHDAGQPREQYQVEQEQPHGLKFAPGASAHKTRLFNVGDK---------- 119

Query: 94  LPDTPSLASLELLLNSTSLRAYGLIGERSWFPFHASSIIPHVNDSMPRLCCQASLQASTS 153
                      ++    +      I     FPFHASSI+PHV +SMPRLCCQASL+ASTS
Sbjct: 120 -----------VITTRPNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTS 179

Query: 154 FSENRVAEERSSISISSIEMIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEK 213
           F ENRVAEERSSIS+SSIE IPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEK
Sbjct: 180 FPENRVAEERSSISVSSIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEK 239

Query: 214 RLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPP 273
           RLN+RRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPP
Sbjct: 240 RLNSRRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPP 299

Query: 274 KMVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGWILELCILHLAMSEIT 333
           KMVYSKLILRFTRKLLVAV DGWD+RALKIEKVIPPTWKNKPAG ILELCILHLAMSEIT
Sbjct: 300 KMVYSKLILRFTRKLLVAVVDGWDNRALKIEKVIPPTWKNKPAGRILELCILHLAMSEIT 359

Query: 334 VIGTRNQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTPAREK 385
           VIGTR+QIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKE DSTPAREK
Sbjct: 360 VIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKETDSTPAREK 389

[Close]

BLAST of Chy5G090550 vs. ExPASy TrEMBL
Match: A0A0A0KWZ5 (NusB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G268020 PE=3 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 1.4e-154
Identity = 291/355 (81.97%), Postives = 304/355 (85.63%), Query Frame = 0


Query: 30  LQIPSFKTDIGLGDSHDADQPHEQYQVEQEQPHGLKFAPGASAHRTRLFTVGDKKNTNET 89
           L+  +FKTD GLGDSHDAD           QPH LKFAPGASAH+TRLFTVGDK      
Sbjct: 56  LKYSAFKTDTGLGDSHDAD-----------QPHSLKFAPGASAHKTRLFTVGDK------ 115

Query: 90  KSFVLPDTPSLASLELLLNSTSLRAYGLIGERSWFPFHASSIIPHVNDSMPRLCCQASLQ 149
              V+   P+              +Y + G    FPFHASSI+PH+ DSMPR CCQASL+
Sbjct: 116 ---VITTRPNFHF-----------SYHISG-ICQFPFHASSIVPHIKDSMPRFCCQASLR 175

Query: 150 ASTSFSENRVAEERSSISISSIEMIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVR 209
           ASTSFSENRVAEERSSISISSIEMIPK+DKSGKFCSPRAARELALSIVYAACLEGSDPVR
Sbjct: 176 ASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVR 235

Query: 210 LFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEIL 269
           LFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEIL
Sbjct: 236 LFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEIL 295

Query: 270 AAPPKMVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGWILELCILHLAM 329
           AAPPK+VYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAG ILELCILHLAM
Sbjct: 296 AAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAM 355

Query: 330 SEITVIGTRNQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTPAREK 385
           SEITVIGTR+QIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDS PAREK
Sbjct: 356 SEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK 378

[Close]

BLAST of Chy5G090550 vs. ExPASy TrEMBL
Match: A0A5A7TFT7 (NusB/RsmB/TIM44 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00940 PE=3 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 3.1e-154
Identity = 306/440 (69.55%), Postives = 322/440 (73.18%), Query Frame = 0


Query: 34  SFKTDIGLGDSHDADQPHEQYQVEQEQPHGLKFAPGASAHRTRLFTVGDKKNTNETKSFV 93
           +FK DIGLGDSHDA QP EQYQVEQEQPHGLKFAPGASAH+TRLF VGDK  T     F+
Sbjct: 60  AFKIDIGLGDSHDAGQPREQYQVEQEQPHGLKFAPGASAHKTRLFNVGDKVITTRF-FFL 119

Query: 94  LPDTPSL---------------ASLELLL------------------------------- 153
            P T S+               ASL LL                                
Sbjct: 120 CPSTYSVLILYLLPLSFFNSNSASLILLTMQGMVDAGSVVTFALKISFGSFLSSLKFGYT 179

Query: 154 ---------NSTSLRAYGLIG-----------ERSW-----------------------F 213
                    N+T++  +  +G              W                       F
Sbjct: 180 RWHLDEHRDNTTTILYWSTLGVAPELNRLKSLRADWGEELGGVELPNFHFSNHISGICQF 239

Query: 214 PFHASSIIPHVNDSMPRLCCQASLQASTSFSENRVAEERSSISISSIEMIPKIDKSGKFC 273
           PFHASSI+PHV +SMPRLCCQASL+ASTSF ENRVAEERSSIS+SSIE IPKIDKSGKFC
Sbjct: 240 PFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVSSIETIPKIDKSGKFC 299

Query: 274 SPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVT 333
           SPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLMEYNHMSFGGPPVT
Sbjct: 300 SPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTSLMEYNHMSFGGPPVT 359

Query: 334 VETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVGDGWDSRALKIE 385
           VETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAV DGWD+RALKIE
Sbjct: 360 VETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVVDGWDNRALKIE 419

[Close]

BLAST of Chy5G090550 vs. ExPASy TrEMBL
Match: A0A1S4DXQ5 (uncharacterized protein LOC103491638 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491638 PE=3 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 2.2e-136
Identity = 248/261 (95.02%), Postives = 255/261 (97.70%), Query Frame = 0


Query: 124 FPFHASSIIPHVNDSMPRLCCQASLQASTSFSENRVAEERSSISISSIEMIPKIDKSGKF 183
           FPFHASSI+PHV +SMPRLCCQASL+ASTSF ENRVAEERSSIS+SSIE IPKIDKSGKF
Sbjct: 29  FPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVSSIETIPKIDKSGKF 88

Query: 184 CSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPV 243
           CSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLMEYNHMSFGGPPV
Sbjct: 89  CSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTSLMEYNHMSFGGPPV 148

Query: 244 TVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVGDGWDSRALKI 303
           TVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAV DGWD+RALKI
Sbjct: 149 TVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVVDGWDNRALKI 208

Query: 304 EKVIPPTWKNKPAGWILELCILHLAMSEITVIGTRNQIVINEAVDLAKRFCDGAAPRIIN 363
           EKVIPPTWKNKPAG ILELCILHLAMSEITVIGTR+QIVINEAVDLAKRFCDGAAPRIIN
Sbjct: 209 EKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIIN 268

Query: 364 GCLRTFVKDIKEIDSTPAREK 385
           GCLRTFVKDIKE DSTPAREK
Sbjct: 269 GCLRTFVKDIKETDSTPAREK 289

[Close]

BLAST of Chy5G090550 vs. NCBI nr
Match: TYK21741.1 (NusB/RsmB/TIM44 [Cucumis melo var. makuwa])

HSP 1 Score: 572 bits (1473), Expect = 9.86e-203
Identity = 299/373 (80.16%), Postives = 314/373 (84.18%), Query Frame = 0


Query: 12  PPNKLEEFPSSSTRKWLCLQIPSFKTDIGLGDSHDADQPHEQYQVEQEQPHGLKFAPGAS 71
           PPN L     S+   +   +  +FK DIGLGDSHDA QP EQYQVEQEQPHGLKFAPGAS
Sbjct: 4   PPNPLFSTSFSTLHSF---KSSAFKIDIGLGDSHDAGQPREQYQVEQEQPHGLKFAPGAS 63

Query: 72  AHRTRLFTVGDKKNTNETKSFVLPDTPSLASLELLLNSTSLRAYGLIGERSWFPFHASSI 131
           AH+TRLFTVGDK                     ++    +      I     FPFHASSI
Sbjct: 64  AHKTRLFTVGDK---------------------VITTRPNFHFSNHISGICQFPFHASSI 123

Query: 132 IPHVNDSMPRLCCQASLQASTSFSENRVAEERSSISISSIEMIPKIDKSGKFCSPRAARE 191
           +PHV +SMPRLCCQASL+ASTSF ENRVAEERSSIS+SSIE IPKIDKSGKFCSPRAARE
Sbjct: 124 VPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVSSIETIPKIDKSGKFCSPRAARE 183

Query: 192 LALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEA 251
           LALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEA
Sbjct: 184 LALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEA 243

Query: 252 DELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTW 311
           DELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAV DGWD+RALKIEKVIPPTW
Sbjct: 244 DELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVVDGWDNRALKIEKVIPPTW 303

Query: 312 KNKPAGWILELCILHLAMSEITVIGTRNQIVINEAVDLAKRFCDGAAPRIINGCLRTFVK 371
           KNKPAG ILELCILHLAMSEITVIGTR+QIVINEAVDLAKRFCDGAAPRIINGCLRTFVK
Sbjct: 304 KNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVK 352

Query: 372 DIKEIDSTPAREK 384
           DIKE DSTPAREK
Sbjct: 364 DIKETDSTPAREK 352

[Close]

BLAST of Chy5G090550 vs. NCBI nr
Match: XP_008449897.1 (PREDICTED: uncharacterized protein LOC103491638 isoform X1 [Cucumis melo])

HSP 1 Score: 568 bits (1464), Expect = 8.91e-201
Identity = 293/351 (83.48%), Postives = 305/351 (86.89%), Query Frame = 0


Query: 34  SFKTDIGLGDSHDADQPHEQYQVEQEQPHGLKFAPGASAHRTRLFTVGDKKNTNETKSFV 93
           +FK DIGLGDSHDA QP EQYQVEQEQPHGLKFAPGASAH+TRLF VGDK          
Sbjct: 60  AFKIDIGLGDSHDAGQPREQYQVEQEQPHGLKFAPGASAHKTRLFNVGDK---------- 119

Query: 94  LPDTPSLASLELLLNSTSLRAYGLIGERSWFPFHASSIIPHVNDSMPRLCCQASLQASTS 153
                      ++    +      I     FPFHASSI+PHV +SMPRLCCQASL+ASTS
Sbjct: 120 -----------VITTRPNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTS 179

Query: 154 FSENRVAEERSSISISSIEMIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEK 213
           F ENRVAEERSSIS+SSIE IPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEK
Sbjct: 180 FPENRVAEERSSISVSSIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEK 239

Query: 214 RLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPP 273
           RLN+RRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPP
Sbjct: 240 RLNSRRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPP 299

Query: 274 KMVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGWILELCILHLAMSEIT 333
           KMVYSKLILRFTRKLLVAV DGWD+RALKIEKVIPPTWKNKPAG ILELCILHLAMSEIT
Sbjct: 300 KMVYSKLILRFTRKLLVAVVDGWDNRALKIEKVIPPTWKNKPAGRILELCILHLAMSEIT 359

Query: 334 VIGTRNQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTPAREK 384
           VIGTR+QIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKE DSTPAREK
Sbjct: 360 VIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKETDSTPAREK 389

[Close]

BLAST of Chy5G090550 vs. NCBI nr
Match: XP_004149639.3 (uncharacterized protein LOC101216754 isoform X1 [Cucumis sativus] >XP_031739815.1 uncharacterized protein LOC101216754 isoform X1 [Cucumis sativus] >KGN54018.1 hypothetical protein Csa_021656 [Cucumis sativus])

HSP 1 Score: 552 bits (1422), Expect = 1.22e-194
Identity = 291/355 (81.97%), Postives = 304/355 (85.63%), Query Frame = 0


Query: 30  LQIPSFKTDIGLGDSHDADQPHEQYQVEQEQPHGLKFAPGASAHRTRLFTVGDKKNTNET 89
           L+  +FKTD GLGDSHDADQPH            LKFAPGASAH+TRLFTVGDK      
Sbjct: 56  LKYSAFKTDTGLGDSHDADQPHS-----------LKFAPGASAHKTRLFTVGDK------ 115

Query: 90  KSFVLPDTPSLASLELLLNSTSLRAYGLIGERSWFPFHASSIIPHVNDSMPRLCCQASLQ 149
              V+   P+              +Y + G    FPFHASSI+PH+ DSMPR CCQASL+
Sbjct: 116 ---VITTRPNFHF-----------SYHISGICQ-FPFHASSIVPHIKDSMPRFCCQASLR 175

Query: 150 ASTSFSENRVAEERSSISISSIEMIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVR 209
           ASTSFSENRVAEERSSISISSIEMIPK+DKSGKFCSPRAARELALSIVYAACLEGSDPVR
Sbjct: 176 ASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVR 235

Query: 210 LFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEIL 269
           LFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEIL
Sbjct: 236 LFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEIL 295

Query: 270 AAPPKMVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGWILELCILHLAM 329
           AAPPK+VYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAG ILELCILHLAM
Sbjct: 296 AAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAM 355

Query: 330 SEITVIGTRNQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTPAREK 384
           SEITVIGTR+QIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDS PAREK
Sbjct: 356 SEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK 378

[Close]

BLAST of Chy5G090550 vs. NCBI nr
Match: KAA0040119.1 (NusB/RsmB/TIM44 [Cucumis melo var. makuwa])

HSP 1 Score: 552 bits (1423), Expect = 7.39e-193
Identity = 306/440 (69.55%), Postives = 322/440 (73.18%), Query Frame = 0


Query: 34  SFKTDIGLGDSHDADQPHEQYQVEQEQPHGLKFAPGASAHRTRLFTVGDKKNTNETKSFV 93
           +FK DIGLGDSHDA QP EQYQVEQEQPHGLKFAPGASAH+TRLF VGDK  T     F+
Sbjct: 60  AFKIDIGLGDSHDAGQPREQYQVEQEQPHGLKFAPGASAHKTRLFNVGDKVITTRF-FFL 119

Query: 94  LPDTPSL---------------ASLELLL------------------------------- 153
            P T S+               ASL LL                                
Sbjct: 120 CPSTYSVLILYLLPLSFFNSNSASLILLTMQGMVDAGSVVTFALKISFGSFLSSLKFGYT 179

Query: 154 ---------NSTSLRAYGLIG-----------ERSW-----------------------F 213
                    N+T++  +  +G              W                       F
Sbjct: 180 RWHLDEHRDNTTTILYWSTLGVAPELNRLKSLRADWGEELGGVELPNFHFSNHISGICQF 239

Query: 214 PFHASSIIPHVNDSMPRLCCQASLQASTSFSENRVAEERSSISISSIEMIPKIDKSGKFC 273
           PFHASSI+PHV +SMPRLCCQASL+ASTSF ENRVAEERSSIS+SSIE IPKIDKSGKFC
Sbjct: 240 PFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVSSIETIPKIDKSGKFC 299

Query: 274 SPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVT 333
           SPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLMEYNHMSFGGPPVT
Sbjct: 300 SPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTSLMEYNHMSFGGPPVT 359

Query: 334 VETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVGDGWDSRALKIE 384
           VETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAV DGWD+RALKIE
Sbjct: 360 VETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVVDGWDNRALKIE 419

[Close]

BLAST of Chy5G090550 vs. NCBI nr
Match: XP_038901769.1 (uncharacterized protein LOC120088495 isoform X1 [Benincasa hispida])

HSP 1 Score: 511 bits (1317), Expect = 2.10e-178
Identity = 273/349 (78.22%), Postives = 290/349 (83.09%), Query Frame = 0


Query: 36  KTDIGLGDSHDADQPHEQYQVEQEQPHGLKFAPGASAHRTRLFTVGDKKNTNETKSFVLP 95
           KT +GLGD  DADQP E+Y+VE EQ  GL FAPGASA  T LFTVGDK         V+ 
Sbjct: 63  KTHVGLGDLGDADQPCEEYEVELEQLSGLDFAPGASADNTGLFTVGDK---------VIT 122

Query: 96  DTPSLASLELLLNSTSLRAYGLIGERSWFPFHASSIIPHVNDSMPRLCCQASLQASTSFS 155
             P+           SL   G+      FPF ASSI+PHV DSM  LC QASL+ASTSF 
Sbjct: 123 TRPNF--------HFSLHISGICR----FPFRASSIVPHVKDSMTHLCPQASLRASTSFP 182

Query: 156 ENRVAEERSSISISSIEMIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRL 215
           EN VAE+RSSIS+SS+E IPK+DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRL
Sbjct: 183 ENCVAEDRSSISVSSVETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRL 242

Query: 216 NARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKM 275
           N RRE GYEFDKTSLMEYNHMSFGGPPVTVET+EEADELLRKDE+DS IEAEILAAPPKM
Sbjct: 243 NTRRELGYEFDKTSLMEYNHMSFGGPPVTVETVEEADELLRKDEKDSIIEAEILAAPPKM 302

Query: 276 VYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGWILELCILHLAMSEITVI 335
           VYSKLILRFTRKLLVAV DGWDSR LKIEKVIPPTWK+KPA  ILELCILHLAMSEITVI
Sbjct: 303 VYSKLILRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKDKPARRILELCILHLAMSEITVI 362

Query: 336 GTRNQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTPAREK 384
           GTR+QIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDS+ AREK
Sbjct: 363 GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSSHAREK 390

[Close]

BLAST of Chy5G090550 vs. TAIR 10
Match: AT4G26370.1 (antitermination NusB domain-containing protein )

HSP 1 Score: 315.8 bits (808), Expect = 4.6e-86
Identity = 159/228 (69.74%), Postives = 185/228 (81.14%), Query Frame = 0


Query: 155 SENRVAEERSSISISSIEMI--PKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFE 214
           S  R A    +IS   ++ +  PKIDKSG+  SPRAARELAL I+YAACLEGSDP+RLFE
Sbjct: 64  SPTRSALRTPTISAEEVKDVPMPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFE 123

Query: 215 KRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAP 274
           KR+NARRE GYEFDK+SL+EYNHMSFGGPPV  ET EE DEL+R DE++S IEAE+L+AP
Sbjct: 124 KRINARREPGYEFDKSSLLEYNHMSFGGPPVKTETKEEEDELVRHDEKESKIEAEVLSAP 183

Query: 275 PKMVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGWILELCILHLAMSEI 334
           PK+VYSKL+LRF +KLL AV D WDS  + IEK+ PP WK+ PAG ILE  ILHLAMSE+
Sbjct: 184 PKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKISPPDWKSAPAGRILEFSILHLAMSEV 243

Query: 335 TVIGTRNQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTP 381
            V+ TR+ IVINEAVDLAKRFCDG+APRIINGCLRTFVKD +   STP
Sbjct: 244 AVLETRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVKD-RATTSTP 290

[Close]

BLAST of Chy5G090550 vs. TAIR 10
Match: AT4G26370.2 (antitermination NusB domain-containing protein )

HSP 1 Score: 149.4 bits (376), Expect = 5.7e-36
Identity = 76/117 (64.96%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 155 SENRVAEERSSISISSIEMI--PKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFE 214
           S  R A    +IS   ++ +  PKIDKSG+  SPRAARELAL I+YAACLEGSDP+RLFE
Sbjct: 64  SPTRSALRTPTISAEEVKDVPMPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFE 123

Query: 215 KRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEIL 270
           KR+NARRE GYEFDK+SL+EYNHMSFGGPPV  ET EE DEL+R DE++S I   ++
Sbjct: 124 KRINARREPGYEFDKSSLLEYNHMSFGGPPVKTETKEEEDELVRHDEKESKIGRSLI 180

The following BLAST results are available for this feature:

BLAST of Chy5G090550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q18B61	1.0e-05	44.44	Transcription antitermination protein NusB OS=Clostridioides difficile (strain 6...	[more]
A7GWZ7	1.1e-04	37.31	Transcription antitermination protein NusB OS=Campylobacter curvus (strain 525.9...	[more]
B1WXY6	1.1e-04	49.02	Transcription antitermination protein NusB OS=Crocosphaera subtropica (strain AT...	[more]
Q04M45	1.1e-04	33.33	Transcription antitermination protein NusB OS=Streptococcus pneumoniae serotype ...	[more]
B5E1P3	1.1e-04	33.33	Transcription antitermination protein NusB OS=Streptococcus pneumoniae serotype ...	[more]

BLAST of Chy5G090550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DDJ4	3.8e-160	80.16	NusB/RsmB/TIM44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G0011...	[more]
A0A1S3BNR2	4.2e-159	83.48	uncharacterized protein LOC103491638 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KWZ5	1.4e-154	81.97	NusB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G268020 PE=3 S...	[more]
A0A5A7TFT7	3.1e-154	69.55	NusB/RsmB/TIM44 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G0094...	[more]
A0A1S4DXQ5	2.2e-136	95.02	uncharacterized protein LOC103491638 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Chy5G090550 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21741.1	9.86e-203	80.16	NusB/RsmB/TIM44 [Cucumis melo var. makuwa]	[more]
XP_008449897.1	8.91e-201	83.48	PREDICTED: uncharacterized protein LOC103491638 isoform X1 [Cucumis melo]	[more]
XP_004149639.3	1.22e-194	81.97	uncharacterized protein LOC101216754 isoform X1 [Cucumis sativus] >XP_031739815....	[more]
KAA0040119.1	7.39e-193	69.55	NusB/RsmB/TIM44 [Cucumis melo var. makuwa]	[more]
XP_038901769.1	2.10e-178	78.22	uncharacterized protein LOC120088495 isoform X1 [Benincasa hispida]	[more]

BLAST of Chy5G090550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26370.1	4.6e-86	69.74	antitermination NusB domain-containing protein	[more]
AT4G26370.2	5.7e-36	64.96	antitermination NusB domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006027	NusB/RsmB/TIM44	PFAM	PF01029	NusB	coord: 299..371 e-value: 6.7E-10 score: 39.3
IPR035926	NusB-like superfamily	GENE3D	1.10.940.10		coord: 186..381 e-value: 7.0E-18 score: 66.8
IPR035926	NusB-like superfamily	SUPERFAMILY	48013	NusB-like	coord: 184..374
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
IPR011605	NusB antitermination factor	PANTHER	PTHR11078	N UTILIZATION SUBSTANCE PROTEIN B-RELATED	coord: 149..383

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy5G090550.1	Chy5G090550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0031564	transcription antitermination
biological_process	GO:0006353	DNA-templated transcription, termination
molecular_function	GO:0003723	RNA binding