Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGCTCATGCCAAGATTTGTAACCTTTATATAAAGCTGAAGGCCACTCTGAAACTTCCTTCCGGGAAATTCCAACGCCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGAATCTCGGATCCTCCTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGAAGCATTTGGGACATCGCCGATCTAAAATCCCACATGCTGAATCTAGATATAAGTCTTGGCATGTTGGCCTTCGGGTACGGAATAAATCATGGCATGAGGAATTTTCATTCAATTTATAGTATTTTTATTTATAAAAAATTTTCTTGTTGATTGTTGATTGATGTGCAGGAACGAAGGTGTGTGGCTGCTTTTGGTGTGGGATTGGGTTATGTGGTTGTTGCACTCAAGACACAAATTGGGCTTGCAAATGCCATTCGTCCCAGCTTCAGCTCCATTATATGGGTTTATCTGTGTGTATTTGTTTTATGGCTCCAGAAATGTAAATACCTTTGGGCAATGTTATTGCTAATTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTCACGCCACTTTTTATAA
mRNA sequence
ATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGCTCATGCCAAGATTTGTAACCTTTATATAAAGCTGAAGGCCACTCTGAAACTTCCTTCCGGGAAATTCCAACGCCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGAATCTCGGATCCTCCTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGAAGCATTTGGGACATCGCCGATCTAAAATCCCACATGCTGAATCTAGATATAAGTCTTGGCATGTTGGCCTTCGGGAACGAAGGTGTGTGGCTGCTTTTGGTGTGGGATTGGGTTATGTGGTTGTTGCACTCAAGACACAAATTGGGCTTGCAAATGCCATTCGTCCCAGCTTCAGCTCCATTATATGGGTTTATCTGTGTGTATTTGTTTTATGGCTCCAGAAATGTAAATACCTTTGGGCAATGTTATTGCTAATTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTCACGCCACTTTTTATAA
Coding sequence (CDS)
ATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGCTCATGCCAAGATTTGTAACCTTTATATAAAGCTGAAGGCCACTCTGAAACTTCCTTCCGGGAAATTCCAACGCCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGAATCTCGGATCCTCCTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGAAGCATTTGGGACATCGCCGATCTAAAATCCCACATGCTGAATCTAGATATAAGTCTTGGCATGTTGGCCTTCGGGAACGAAGGTGTGTGGCTGCTTTTGGTGTGGGATTGGGTTATGTGGTTGTTGCACTCAAGACACAAATTGGGCTTGCAAATGCCATTCGTCCCAGCTTCAGCTCCATTATATGGGTTTATCTGTGTGTATTTGTTTTATGGCTCCAGAAATGTAAATACCTTTGGGCAATGTTATTGCTAATTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTCACGCCACTTTTTATAA
Protein sequence
MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQIGLANAIRPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHSRHFL*
Homology
BLAST of Chy4G090300 vs. ExPASy TrEMBL
Match:
A0A1S3B4Y8 (uncharacterized protein LOC103486229 OS=Cucumis melo OX=3656 GN=LOC103486229 PE=4 SV=1)
HSP 1 Score: 287.7 bits (735), Expect = 3.3e-74
Identity = 153/181 (84.53%), Postives = 164/181 (90.61%), Query Frame = 0
Query: 1 MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQR 60
MAIGHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QR
Sbjct: 1 MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60
Query: 61 RRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQ 120
RRTLKSRMLSFVKKHLG RSKIPH+ES+Y+SWHVG + GVG GY +VALKTQ
Sbjct: 61 RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQ-------IGVGFGY-LVALKTQ 120
Query: 121 IGLANAIRPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHSRH 180
IGLANA+ SFSSIIWVYLCVFV+WLQKCKYLWA+LLL+PLFPLLLFQLDTFVHLLH RH
Sbjct: 121 IGLANAVGSSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRH 173
Query: 181 F 182
F
Sbjct: 181 F 173
BLAST of Chy4G090300 vs. ExPASy TrEMBL
Match:
A0A0A0LCL9 (50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_3G728110 PE=4 SV=1)
HSP 1 Score: 251.5 bits (641), Expect = 2.7e-63
Identity = 132/140 (94.29%), Postives = 133/140 (95.00%), Query Frame = 0
Query: 1 MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQR 60
MAIGHRRSFKIS AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS SRILLQR
Sbjct: 1 MAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQR 60
Query: 61 RRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQ 120
RRTLKSRMLSFVKKHLGHRRSK PHAESRY+SWHVGL ERRCVAAFGVGLGYVVVALKTQ
Sbjct: 61 RRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALKTQ 120
Query: 121 IGLANAIRPSFSSIIWVYLC 141
I LANAI PSFSSIIWVYLC
Sbjct: 121 IELANAIGPSFSSIIWVYLC 140
BLAST of Chy4G090300 vs. ExPASy TrEMBL
Match:
A0A5A7TM08 (RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005850 PE=4 SV=1)
HSP 1 Score: 191.0 bits (484), Expect = 4.3e-45
Identity = 104/127 (81.89%), Postives = 112/127 (88.19%), Query Frame = 0
Query: 1 MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQR 60
MAIGHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QR
Sbjct: 170 MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 229
Query: 61 RRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQ 120
RRTLKSRMLSFVKKHLG RSKIPH+ES+Y+ WHVG + GVG GY +VALKTQ
Sbjct: 230 RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQYWHVGHQ-------IGVGFGY-LVALKTQ 288
Query: 121 IGLANAI 128
IGLANA+
Sbjct: 290 IGLANAV 288
BLAST of Chy4G090300 vs. ExPASy TrEMBL
Match:
A0A5D3DNQ2 (50S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00230 PE=4 SV=1)
HSP 1 Score: 187.6 bits (475), Expect = 4.7e-44
Identity = 102/123 (82.93%), Postives = 109/123 (88.62%), Query Frame = 0
Query: 4 GHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRT 63
GHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QRRRT
Sbjct: 7 GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRT 66
Query: 64 LKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQIGL 123
LKSRMLSFVKKHLG RSKIPH+ES+Y+SWHVG + GVG GY +VALKTQIGL
Sbjct: 67 LKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQ-------IGVGFGY-LVALKTQIGL 121
Query: 124 ANA 127
ANA
Sbjct: 127 ANA 121
BLAST of Chy4G090300 vs. NCBI nr
Match:
KAE8650972.1 (hypothetical protein Csa_002588 [Cucumis sativus])
HSP 1 Score: 323 bits (829), Expect = 8.05e-111
Identity = 172/182 (94.51%), Postives = 173/182 (95.05%), Query Frame = 0
Query: 1 MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQR 60
MAIGHRRSFKIS AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS SRILLQR
Sbjct: 3 MAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQR 62
Query: 61 RRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQ 120
RRTLKSRMLSFVKKHLGHRRSK PHAESRY+SWHVGL ERRCVAAFGVGLGYVVVALKTQ
Sbjct: 63 RRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALKTQ 122
Query: 121 IGLANAIRPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHSRH 180
I LANAI PSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLH R
Sbjct: 123 IELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHLRQ 182
Query: 181 FL 182
FL
Sbjct: 183 FL 184
BLAST of Chy4G090300 vs. NCBI nr
Match:
XP_008442323.1 (PREDICTED: uncharacterized protein LOC103486229 [Cucumis melo])
HSP 1 Score: 286 bits (732), Expect = 3.45e-96
Identity = 153/181 (84.53%), Postives = 164/181 (90.61%), Query Frame = 0
Query: 1 MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQR 60
MAIGHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QR
Sbjct: 1 MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60
Query: 61 RRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQ 120
RRTLKSRMLSFVKKHLG RSKIPH+ES+Y+SWHVG + GVG GY+V ALKTQ
Sbjct: 61 RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQ-------IGVGFGYLV-ALKTQ 120
Query: 121 IGLANAIRPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHSRH 180
IGLANA+ SFSSIIWVYLCVFV+WLQKCKYLWA+LLL+PLFPLLLFQLDTFVHLLH RH
Sbjct: 121 IGLANAVGSSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRH 173
BLAST of Chy4G090300 vs. NCBI nr
Match:
XP_038906422.1 (uncharacterized protein LOC120092221 [Benincasa hispida])
HSP 1 Score: 248 bits (633), Expect = 2.34e-80
Identity = 142/186 (76.34%), Postives = 151/186 (81.18%), Query Frame = 0
Query: 1 MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQR 60
MA+G RRSFKI+ HAKICNLYIKLKATLK PSGK QRLLKLDKLLI DSKSES IL+QR
Sbjct: 42 MALGFRRSFKITVHAKICNLYIKLKATLKPPSGKLQRLLKLDKLLIGADSKSESWILVQR 101
Query: 61 RRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQ 120
RRTLKSRMLSFVKKHLG RSK+PHAES +SW VG E RCVA FGVGLGY++ AL T
Sbjct: 102 RRTLKSRMLSFVKKHLGCGRSKMPHAESENQSWDVGRMELRCVAFFGVGLGYLL-ALNTH 161
Query: 121 IGLANAIRPSFSSIIWVYLCV--FVLWLQKCKYL--WAMLLLIPLFPLLLFQLDTFVHLL 180
IGL NAI PSFSS IWV LC+ FVLWL KCKYL WA+L LI L PL L QLD FVHLL
Sbjct: 162 IGLTNAIHPSFSSTIWVCLCLLLFVLWLHKCKYLYLWAILFLIALLPLFLLQLDKFVHLL 221
Query: 181 HSRHFL 182
H RHFL
Sbjct: 222 HLRHFL 226
BLAST of Chy4G090300 vs. NCBI nr
Match:
TYK24910.1 (50S ribosomal protein L35 [Cucumis melo var. makuwa])
HSP 1 Score: 186 bits (472), Expect = 2.49e-57
Identity = 102/123 (82.93%), Postives = 109/123 (88.62%), Query Frame = 0
Query: 4 GHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRT 63
GHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QRRRT
Sbjct: 7 GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRT 66
Query: 64 LKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQIGL 123
LKSRMLSFVKKHLG RSKIPH+ES+Y+SWHVG + GVG GY+V ALKTQIGL
Sbjct: 67 LKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQ-------IGVGFGYLV-ALKTQIGL 121
Query: 124 ANA 126
ANA
Sbjct: 127 ANA 121
BLAST of Chy4G090300 vs. NCBI nr
Match:
KAA0044224.1 (RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa])
HSP 1 Score: 191 bits (484), Expect = 1.28e-56
Identity = 105/130 (80.77%), Postives = 113/130 (86.92%), Query Frame = 0
Query: 1 MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQR 60
MAIGHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QR
Sbjct: 170 MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 229
Query: 61 RRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQ 120
RRTLKSRMLSFVKKHLG RSKIPH+ES+Y+ WHVG + GVG GY+V ALKTQ
Sbjct: 230 RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQYWHVGHQ-------IGVGFGYLV-ALKTQ 289
Query: 121 IGLANAIRPS 130
IGLANA+ S
Sbjct: 290 IGLANAVIQS 291
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3B4Y8 | 3.3e-74 | 84.53 | uncharacterized protein LOC103486229 OS=Cucumis melo OX=3656 GN=LOC103486229 PE=... | [more] |
A0A0A0LCL9 | 2.7e-63 | 94.29 | 50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_3G728110 PE=4 SV=1 | [more] |
A0A5A7TM08 | 4.3e-45 | 81.89 | RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3DNQ2 | 4.7e-44 | 82.93 | 50S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... | [more] |
Match Name | E-value | Identity | Description | |
KAE8650972.1 | 8.05e-111 | 94.51 | hypothetical protein Csa_002588 [Cucumis sativus] | [more] |
XP_008442323.1 | 3.45e-96 | 84.53 | PREDICTED: uncharacterized protein LOC103486229 [Cucumis melo] | [more] |
XP_038906422.1 | 2.34e-80 | 76.34 | uncharacterized protein LOC120092221 [Benincasa hispida] | [more] |
TYK24910.1 | 2.49e-57 | 82.93 | 50S ribosomal protein L35 [Cucumis melo var. makuwa] | [more] |
KAA0044224.1 | 1.28e-56 | 80.77 | RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |