Chy4G090300 (gene) Cucumber (hystrix) v1

Overview
NameChy4G090300
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description50S ribosomal protein L35
LocationchrH04: 27559939 .. 27560581 (+)
RNA-Seq ExpressionChy4G090300
SyntenyChy4G090300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGCTCATGCCAAGATTTGTAACCTTTATATAAAGCTGAAGGCCACTCTGAAACTTCCTTCCGGGAAATTCCAACGCCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGAATCTCGGATCCTCCTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGAAGCATTTGGGACATCGCCGATCTAAAATCCCACATGCTGAATCTAGATATAAGTCTTGGCATGTTGGCCTTCGGGTACGGAATAAATCATGGCATGAGGAATTTTCATTCAATTTATAGTATTTTTATTTATAAAAAATTTTCTTGTTGATTGTTGATTGATGTGCAGGAACGAAGGTGTGTGGCTGCTTTTGGTGTGGGATTGGGTTATGTGGTTGTTGCACTCAAGACACAAATTGGGCTTGCAAATGCCATTCGTCCCAGCTTCAGCTCCATTATATGGGTTTATCTGTGTGTATTTGTTTTATGGCTCCAGAAATGTAAATACCTTTGGGCAATGTTATTGCTAATTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTCACGCCACTTTTTATAA

mRNA sequence

ATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGCTCATGCCAAGATTTGTAACCTTTATATAAAGCTGAAGGCCACTCTGAAACTTCCTTCCGGGAAATTCCAACGCCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGAATCTCGGATCCTCCTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGAAGCATTTGGGACATCGCCGATCTAAAATCCCACATGCTGAATCTAGATATAAGTCTTGGCATGTTGGCCTTCGGGAACGAAGGTGTGTGGCTGCTTTTGGTGTGGGATTGGGTTATGTGGTTGTTGCACTCAAGACACAAATTGGGCTTGCAAATGCCATTCGTCCCAGCTTCAGCTCCATTATATGGGTTTATCTGTGTGTATTTGTTTTATGGCTCCAGAAATGTAAATACCTTTGGGCAATGTTATTGCTAATTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTCACGCCACTTTTTATAA

Coding sequence (CDS)

ATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGCTCATGCCAAGATTTGTAACCTTTATATAAAGCTGAAGGCCACTCTGAAACTTCCTTCCGGGAAATTCCAACGCCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGAATCTCGGATCCTCCTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGAAGCATTTGGGACATCGCCGATCTAAAATCCCACATGCTGAATCTAGATATAAGTCTTGGCATGTTGGCCTTCGGGAACGAAGGTGTGTGGCTGCTTTTGGTGTGGGATTGGGTTATGTGGTTGTTGCACTCAAGACACAAATTGGGCTTGCAAATGCCATTCGTCCCAGCTTCAGCTCCATTATATGGGTTTATCTGTGTGTATTTGTTTTATGGCTCCAGAAATGTAAATACCTTTGGGCAATGTTATTGCTAATTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTCACGCCACTTTTTATAA

Protein sequence

MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQIGLANAIRPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHSRHFL*
Homology
BLAST of Chy4G090300 vs. ExPASy TrEMBL
Match: A0A1S3B4Y8 (uncharacterized protein LOC103486229 OS=Cucumis melo OX=3656 GN=LOC103486229 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.3e-74
Identity = 153/181 (84.53%), Postives = 164/181 (90.61%), Query Frame = 0

Query: 1   MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQR 60
           MAIGHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QR
Sbjct: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60

Query: 61  RRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQ 120
           RRTLKSRMLSFVKKHLG  RSKIPH+ES+Y+SWHVG +        GVG GY +VALKTQ
Sbjct: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQ-------IGVGFGY-LVALKTQ 120

Query: 121 IGLANAIRPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHSRH 180
           IGLANA+  SFSSIIWVYLCVFV+WLQKCKYLWA+LLL+PLFPLLLFQLDTFVHLLH RH
Sbjct: 121 IGLANAVGSSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRH 173

Query: 181 F 182
           F
Sbjct: 181 F 173

BLAST of Chy4G090300 vs. ExPASy TrEMBL
Match: A0A0A0LCL9 (50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_3G728110 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.7e-63
Identity = 132/140 (94.29%), Postives = 133/140 (95.00%), Query Frame = 0

Query: 1   MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQR 60
           MAIGHRRSFKIS  AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS SRILLQR
Sbjct: 1   MAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQR 60

Query: 61  RRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQ 120
           RRTLKSRMLSFVKKHLGHRRSK PHAESRY+SWHVGL ERRCVAAFGVGLGYVVVALKTQ
Sbjct: 61  RRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALKTQ 120

Query: 121 IGLANAIRPSFSSIIWVYLC 141
           I LANAI PSFSSIIWVYLC
Sbjct: 121 IELANAIGPSFSSIIWVYLC 140

BLAST of Chy4G090300 vs. ExPASy TrEMBL
Match: A0A5A7TM08 (RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005850 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 4.3e-45
Identity = 104/127 (81.89%), Postives = 112/127 (88.19%), Query Frame = 0

Query: 1   MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQR 60
           MAIGHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QR
Sbjct: 170 MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 229

Query: 61  RRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQ 120
           RRTLKSRMLSFVKKHLG  RSKIPH+ES+Y+ WHVG +        GVG GY +VALKTQ
Sbjct: 230 RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQYWHVGHQ-------IGVGFGY-LVALKTQ 288

Query: 121 IGLANAI 128
           IGLANA+
Sbjct: 290 IGLANAV 288

BLAST of Chy4G090300 vs. ExPASy TrEMBL
Match: A0A5D3DNQ2 (50S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00230 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 4.7e-44
Identity = 102/123 (82.93%), Postives = 109/123 (88.62%), Query Frame = 0

Query: 4   GHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRT 63
           GHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QRRRT
Sbjct: 7   GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRT 66

Query: 64  LKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQIGL 123
           LKSRMLSFVKKHLG  RSKIPH+ES+Y+SWHVG +        GVG GY +VALKTQIGL
Sbjct: 67  LKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQ-------IGVGFGY-LVALKTQIGL 121

Query: 124 ANA 127
           ANA
Sbjct: 127 ANA 121

BLAST of Chy4G090300 vs. NCBI nr
Match: KAE8650972.1 (hypothetical protein Csa_002588 [Cucumis sativus])

HSP 1 Score: 323 bits (829), Expect = 8.05e-111
Identity = 172/182 (94.51%), Postives = 173/182 (95.05%), Query Frame = 0

Query: 1   MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQR 60
           MAIGHRRSFKIS  AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS SRILLQR
Sbjct: 3   MAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQR 62

Query: 61  RRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQ 120
           RRTLKSRMLSFVKKHLGHRRSK PHAESRY+SWHVGL ERRCVAAFGVGLGYVVVALKTQ
Sbjct: 63  RRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALKTQ 122

Query: 121 IGLANAIRPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHSRH 180
           I LANAI PSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLH R 
Sbjct: 123 IELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHLRQ 182

Query: 181 FL 182
           FL
Sbjct: 183 FL 184

BLAST of Chy4G090300 vs. NCBI nr
Match: XP_008442323.1 (PREDICTED: uncharacterized protein LOC103486229 [Cucumis melo])

HSP 1 Score: 286 bits (732), Expect = 3.45e-96
Identity = 153/181 (84.53%), Postives = 164/181 (90.61%), Query Frame = 0

Query: 1   MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQR 60
           MAIGHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QR
Sbjct: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60

Query: 61  RRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQ 120
           RRTLKSRMLSFVKKHLG  RSKIPH+ES+Y+SWHVG +        GVG GY+V ALKTQ
Sbjct: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQ-------IGVGFGYLV-ALKTQ 120

Query: 121 IGLANAIRPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHSRH 180
           IGLANA+  SFSSIIWVYLCVFV+WLQKCKYLWA+LLL+PLFPLLLFQLDTFVHLLH RH
Sbjct: 121 IGLANAVGSSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRH 173

BLAST of Chy4G090300 vs. NCBI nr
Match: XP_038906422.1 (uncharacterized protein LOC120092221 [Benincasa hispida])

HSP 1 Score: 248 bits (633), Expect = 2.34e-80
Identity = 142/186 (76.34%), Postives = 151/186 (81.18%), Query Frame = 0

Query: 1   MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQR 60
           MA+G RRSFKI+ HAKICNLYIKLKATLK PSGK QRLLKLDKLLI  DSKSES IL+QR
Sbjct: 42  MALGFRRSFKITVHAKICNLYIKLKATLKPPSGKLQRLLKLDKLLIGADSKSESWILVQR 101

Query: 61  RRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQ 120
           RRTLKSRMLSFVKKHLG  RSK+PHAES  +SW VG  E RCVA FGVGLGY++ AL T 
Sbjct: 102 RRTLKSRMLSFVKKHLGCGRSKMPHAESENQSWDVGRMELRCVAFFGVGLGYLL-ALNTH 161

Query: 121 IGLANAIRPSFSSIIWVYLCV--FVLWLQKCKYL--WAMLLLIPLFPLLLFQLDTFVHLL 180
           IGL NAI PSFSS IWV LC+  FVLWL KCKYL  WA+L LI L PL L QLD FVHLL
Sbjct: 162 IGLTNAIHPSFSSTIWVCLCLLLFVLWLHKCKYLYLWAILFLIALLPLFLLQLDKFVHLL 221

Query: 181 HSRHFL 182
           H RHFL
Sbjct: 222 HLRHFL 226

BLAST of Chy4G090300 vs. NCBI nr
Match: TYK24910.1 (50S ribosomal protein L35 [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (472), Expect = 2.49e-57
Identity = 102/123 (82.93%), Postives = 109/123 (88.62%), Query Frame = 0

Query: 4   GHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQRRRT 63
           GHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QRRRT
Sbjct: 7   GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRT 66

Query: 64  LKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQIGL 123
           LKSRMLSFVKKHLG  RSKIPH+ES+Y+SWHVG +        GVG GY+V ALKTQIGL
Sbjct: 67  LKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQ-------IGVGFGYLV-ALKTQIGL 121

Query: 124 ANA 126
           ANA
Sbjct: 127 ANA 121

BLAST of Chy4G090300 vs. NCBI nr
Match: KAA0044224.1 (RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (484), Expect = 1.28e-56
Identity = 105/130 (80.77%), Postives = 113/130 (86.92%), Query Frame = 0

Query: 1   MAIGHRRSFKISAHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRILLQR 60
           MAIGHRRSFKIS HAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESR+L+QR
Sbjct: 170 MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 229

Query: 61  RRTLKSRMLSFVKKHLGHRRSKIPHAESRYKSWHVGLRERRCVAAFGVGLGYVVVALKTQ 120
           RRTLKSRMLSFVKKHLG  RSKIPH+ES+Y+ WHVG +        GVG GY+V ALKTQ
Sbjct: 230 RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQYWHVGHQ-------IGVGFGYLV-ALKTQ 289

Query: 121 IGLANAIRPS 130
           IGLANA+  S
Sbjct: 290 IGLANAVIQS 291

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3B4Y83.3e-7484.53uncharacterized protein LOC103486229 OS=Cucumis melo OX=3656 GN=LOC103486229 PE=... [more]
A0A0A0LCL92.7e-6394.2950S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_3G728110 PE=4 SV=1[more]
A0A5A7TM084.3e-4581.89RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3DNQ24.7e-4482.9350S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
Match NameE-valueIdentityDescription
KAE8650972.18.05e-11194.51hypothetical protein Csa_002588 [Cucumis sativus][more]
XP_008442323.13.45e-9684.53PREDICTED: uncharacterized protein LOC103486229 [Cucumis melo][more]
XP_038906422.12.34e-8076.34uncharacterized protein LOC120092221 [Benincasa hispida][more]
TYK24910.12.49e-5782.9350S ribosomal protein L35 [Cucumis melo var. makuwa][more]
KAA0044224.11.28e-5680.77RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G090300.1Chy4G090300.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome