Chy4G089880 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G089880
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	UvrABC system C protein
Location	chrH04: 27324721 .. 27328099 (+)
RNA-Seq Expression	Chy4G089880
Synteny	Chy4G089880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGTGGAAATTTCGTCCACAGAGTATTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGGTAGGAATGTTAAGGCTTTACTGCGCGTAGAAGGGTTTTTTTATCTTTTGTTTTGATTTGGACGATGATGAATCAATGATGTATGTATGAATAAGCTTCATTCTCTGGCCGGAGGGATGGATTAGTTCCTATTTGGCTCGTTCCATTGAAGCAAAATATTTATAGATTTTCTTTTATGTTTATCTGCTGCCTTGATCGTTGGGTGTGCAGATGAGGAAATCTTAGAAATTTTGGCTATAGCTTCTTTAATTTTCCTTTTCTTGAATTGGAGTCCCATTATCTTCGTTTGGCTTTATTAGCTCTAGAGGTTCGTCGGTGATTATGCGTTGCACAGCTTAGGAAATTTGTTAAACGTTTGCTATAAATCCGTTTTCTATTTCTTTTGTGAGGATCGATGGGGCCTGATCTATGTTTGTTGAATCAATGCTAGAATCGTAACTTAGTGGTTGAGTTTGAGTAAAATTTTATATTTTGATATTGTTTTTCATTTGGCGTGATCAGTTCAGTTATTTGTATAAGTTCCATCAGTTGGAATACGATACGAGTCAAGAACGTTAGTGAAGCCAAGCCATATATAAAGGCGAGCGACCCAATCAACAATAGCCAGCGGAGCAGTTATATAGCCTCTTTCCCCCCCTAAATACTCGCTGTTCTCTCTTAAAGCTAGTATAAAAGAAGACGAGGGTACCACTTTCTGTTTCAAATAGAATTTCTATGTGAATAGAGAATGAACCAACTATATTCATGGTTTACTAATATAAAGTAGAACAAAAATAATAAGAAAGATTTTAACTTGGGCTTTTTTTCTTGAAGTATTATATTGGTTCATTATCAGGTTGAGTTTAAGGTATTAGGTAACGGTTTTGTTTTTTCAAAGGAAGTTATTTTATTTGAAGCATAAACTGTATGCTAATTAGCAGGGGAGGAAATATTTATCCAAGGCATAGAGATAGCTCCAAGCTACCAAAAAAAAAAGTCTAAAAAATGTTGCATCTGATCAAAATTTAGAACCACTAGCACAAAGCAATTCTGTAGAACAGAAGGCAGTGGCCTTTTCAAATGTAGTTAAGTGAGGATATGGAAGAATGGATGCTTGCCTAATTGAAACCATTGGCCACAAGGGGGTTTGTCAGAGAAACAGAACAAAACGAAAGTGGTGTTACAAGTTTTTTTTTATCTGGGGGCGATTTTCTTCTTTATTTTCATTCGTATATTTGGTTGTTCTATTCAAAATTATGTGTCACGAGGCTTCAACTGTTGTTATTTTTGCATATGGAACAGTGTGACAAATATTGTTCTTTGTTATCTTCCCCAAGATTGTCTCCTATTCCCTTGTTTGAACAATGGCAAATGTTAACTTGTATGCTTATAATGATTGTATCAATTATACTTGTAAGAGTTCAGCTGCCTAGGCATTTTTTTCCAGCATTTCTGCCATTAAATCAAATACTTTCAAGCTCTGTAACAACTGAAGTCACATTTGTCTTCTTAATACTAATTGTTCGTTCTCAATAATTTATTTCACTCTCATTGTCCTTTTCTGCAGCCGTTCCTTTCAAAGGTTTGCTGTGAGGACATCGAAACAAATTGAGGATATATCTAACAAGGGTAGAACCTTTAAACTGTTTTTGCTTCATTGATTTCAATTTTACTTGCGGTATTTATTGTTGAGCTGTTTAACTTATGCTAGTAAGACTGGAATTGTTTTGCAGCTGCACAGAAGAAGCAAGAACTTGCAGAACAAGTGAAAGATTTCTCCAAAAATTTTGATGTGAGATGCTTCTTTCAACTTAGATTTTTTTATTTTGAACAGCGTAGACGTAACCTTATGCCTTGTATTAATCTTATGCCTTCGTCTTGCAGTCTTTCAAGAACCATTAACGTGGAGTGGAACGTTTTACTGCAACATGATGTATAAATCCTATTCCAATTTTACTCGTAATAGTCGCAGATTCCCTGAAAGATTTGTTTAATAACCTCATCTTGTCTATGTATTGAGTATATGTGACAGTAGAATTCTAGATTTGTTCTTGGTTACCCAGTTGCCTTTGCATGTAATTGAAGTCAAGATGAACTGATCTCTTCCTTGGCTTATGCAGTTGCATGTTTCTGATTTTGTAGCTTTTTTTCACCGCCGTTATCATCGTTGGACTGTGGGACTTTTAAATAGGCCTTGAAACAAAGATATGGCAATTGAAAAATAATAAGAAGTTTGCTTTCGATCGCTTAACTAAACACATTTTTCTTAGGGAAAATTTACCTTTCTAGTTCTGGAGGTTGAAGTATAATGGTCCTTGAGTTCTCAAAACATACCCGATTCTGAGTTTTTTTAAGTTGTAAGATCACAGGTATAGAGGTACAAAAGTGTCCCATATATTTTTCAATATATATTTAAGGAGGAGAATTAATTTTTTAACTTTCTACTTGAAAATAACAGGAAATAATTCAATTGCCAAATATAAAATATTACGTATTGATAAGTAGCAATTTCTACCTTTTATATGCCATATGGATTGCTGCCTAAGAAATTTTGTAGCATATCAAAGAAATTGCTACTTATTGACGCAAGTTGAAAAGTTGAACTATTTTAATGTAAAAATGTTCAAGGGAAAAATAATTTATCGATTGTATACAAAATCACACCCTACCCCTGAAGACAATTTAACTCTTTAAATATATGAGGTTACGATTGAAGACAGCAAAATAAATCGCACAGCTTAGATTACAAATTTTAATATGTACTTGAAGCACACTCGCATAAAGCTAAAGTTGCTAAAATATGTATTTGAATTTTTATTTTTAAAATGTGTTCCATAGCTGGGAATATTATTGAATGTTTTTTTAAAAAAATTTAAAGTTCAATAATTCATGTTTAGTTGGACGATTTTCTTTTTCATAGGGGCAGTGTATAGAACTAATTCCTTTTTGTTTTTTGTTTTGTGGTTTAAAAAGGGCAGAGATCATTGATGAATGGCACGATGCCCCAATTAAAGTTCATGGACTTTTCAATGTACTGAGAATGCCTCAGCACGTAATCGTTCTCTTGTCCTTGTCTTTGGATCTTTTTTCCCTTTAACTATGTCTTCAACCAAAAGCCCATCGTTTGAGAAGTGTTAGGGCTTAAACGTTAGTAATCTGATGCATCATAAATATCTAAGTTCGATAAACGTCTTGGTTTCTGTTCATAAAACAAATTATAAAGTAGATCTTCATTGTTTCCATATAAGCAGGCAAAAGAAGTTTTGATGTTTTTTGGGAAACGTGGAAGTTGGGCAACTTTTGAAATCTTAGACTTCACTTAA

mRNA sequence

ATGGCGGGTGGAAATTTCGTCCACAGAGTATTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGCCGTTCCTTTCAAAGGTTTGCTGTGAGGACATCGAAACAAATTGAGGATATATCTAACAAGGCTGCACAGAAGAAGCAAGAACTTGCAGAACAAGTGAAAGATTTCTCCAAAAATTTTGATGCAAAAGAAGTTTTGATGTTTTTTGGGAAACGTGGAAGTTGGGCAACTTTTGAAATCTTAGACTTCACTTAA

Coding sequence (CDS)

ATGGCGGGTGGAAATTTCGTCCACAGAGTATTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGCCGTTCCTTTCAAAGGTTTGCTGTGAGGACATCGAAACAAATTGAGGATATATCTAACAAGGCTGCACAGAAGAAGCAAGAACTTGCAGAACAAGTGAAAGATTTCTCCAAAAATTTTGATGCAAAAGAAGTTTTGATGTTTTTTGGGAAACGTGGAAGTTGGGCAACTTTTGAAATCTTAGACTTCACTTAA

Protein sequence

MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDAKEVLMFFGKRGSWATFEILDFT*

Homology

[Close]

BLAST of Chy4G089880 vs. ExPASy TrEMBL
Match: A0A0A0L9U5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731020 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.8e-26
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 FSKNFDA 68
          FSKNFD+
Sbjct: 61 FSKNFDS 67

[Close]

BLAST of Chy4G089880 vs. ExPASy TrEMBL
Match: A0A1S3B691 (uncharacterized protein LOC103486274 OS=Cucumis melo OX=3656 GN=LOC103486274 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.0e-25
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF+HRVFSYLVNEVLVNSLANSRSFQRFAV+TSKQIEDIS KAAQKKQELAEQVKD
Sbjct: 1  MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60

Query: 61 FSKNFDA 68
          FSKNFD+
Sbjct: 61 FSKNFDS 67

[Close]

BLAST of Chy4G089880 vs. ExPASy TrEMBL
Match: A0A6J1F5E7 (uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC111442470 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.7e-24
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIEDISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 FSKNFDA 68
           SKNFD+
Sbjct: 61 LSKNFDS 67

[Close]

BLAST of Chy4G089880 vs. ExPASy TrEMBL
Match: A0A6J1IZW4 (uncharacterized protein LOC111482182 OS=Cucurbita maxima OX=3661 GN=LOC111482182 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.3e-23
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIEDISNKAA+KKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAARKKQELAEQVKD 60

Query: 61 FSKNFDA 68
           SKNFD+
Sbjct: 61 LSKNFDS 67

[Close]

BLAST of Chy4G089880 vs. ExPASy TrEMBL
Match: A0A6J1I5H8 (uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSRSFQRFAVRTSKQIEDIS KAAQKKQELAEQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 FSKNFDA 68
           SKNF++
Sbjct: 61 LSKNFES 67

[Close]

BLAST of Chy4G089880 vs. NCBI nr
Match: XP_004137707.1 (uncharacterized protein LOC101209674 [Cucumis sativus] >KGN58740.1 hypothetical protein Csa_001726 [Cucumis sativus])

HSP 1 Score: 125 bits (315), Expect = 1.12e-35
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 FSKNFDA 67
          FSKNFD+
Sbjct: 61 FSKNFDS 67

[Close]

BLAST of Chy4G089880 vs. NCBI nr
Match: XP_008442394.1 (PREDICTED: uncharacterized protein LOC103486274 [Cucumis melo])

HSP 1 Score: 122 bits (305), Expect = 3.74e-34
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF+HRVFSYLVNEVLVNSLANSRSFQRFAV+TSKQIEDIS KAAQKKQELAEQVKD
Sbjct: 1  MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60

Query: 61 FSKNFDA 67
          FSKNFD+
Sbjct: 61 FSKNFDS 67

[Close]

BLAST of Chy4G089880 vs. NCBI nr
Match: XP_022935686.1 (uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothetical protein SDJN03_20467, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017215.1 hypothetical protein SDJN02_19077, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118 bits (296), Expect = 8.81e-33
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIEDISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 FSKNFDA 67
           SKNFD+
Sbjct: 61 LSKNFDS 67

[Close]

BLAST of Chy4G089880 vs. NCBI nr
Match: XP_022983627.1 (uncharacterized protein LOC111482182 [Cucurbita maxima])

HSP 1 Score: 117 bits (292), Expect = 3.59e-32
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIEDISNKAA+KKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAARKKQELAEQVKD 60

Query: 61 FSKNFDA 67
           SKNFD+
Sbjct: 61 LSKNFDS 67

[Close]

BLAST of Chy4G089880 vs. NCBI nr
Match: XP_038903248.1 (uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903249.1 uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903250.1 uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903251.1 uncharacterized protein LOC120089892 [Benincasa hispida])

HSP 1 Score: 117 bits (292), Expect = 3.59e-32
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIE+ISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRTFQRFAVRTSKQIEEISNKAAQKKQELAEQVKD 60

Query: 61 FSKNFDA 67
           SKNFD+
Sbjct: 61 LSKNFDS 67

[Close]

BLAST of Chy4G089880 vs. TAIR 10
Match: AT5G01350.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 80.9 bits (198), Expect = 5.9e-16
Identity = 37/65 (56.92%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 3  GGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFS 62
          GGNF+ RV SY+ NE +VN LANS +FQRFAVRTSK+IE++S  AA+ ++++A+Q+++F+
Sbjct: 4  GGNFIARVISYVANEFIVNGLANSHAFQRFAVRTSKRIENLSKMAAENREKVAQQMEEFA 63

Query: 63 KNFDA 68
          KN D+
Sbjct: 64 KNIDS 68

The following BLAST results are available for this feature:

BLAST of Chy4G089880 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G089880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9U5	4.8e-26	98.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731020 PE=4 SV=1	[more]
A0A1S3B691	7.0e-25	94.03	uncharacterized protein LOC103486274 OS=Cucumis melo OX=3656 GN=LOC103486274 PE=...	[more]
A0A6J1F5E7	7.7e-24	92.54	uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC1114424...	[more]
A0A6J1IZW4	2.3e-23	91.04	uncharacterized protein LOC111482182 OS=Cucurbita maxima OX=3661 GN=LOC111482182...	[more]
A0A6J1I5H8	1.1e-22	89.55	uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102...	[more]

BLAST of Chy4G089880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137707.1	1.12e-35	98.51	uncharacterized protein LOC101209674 [Cucumis sativus] >KGN58740.1 hypothetical ...	[more]
XP_008442394.1	3.74e-34	94.03	PREDICTED: uncharacterized protein LOC103486274 [Cucumis melo]	[more]
XP_022935686.1	8.81e-33	92.54	uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothet...	[more]
XP_022983627.1	3.59e-32	91.04	uncharacterized protein LOC111482182 [Cucurbita maxima]	[more]
XP_038903248.1	3.59e-32	91.04	uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903249.1 unchara...	[more]

BLAST of Chy4G089880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01350.1	5.9e-16	56.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 33..64
None	No IPR available	PANTHER	PTHR34966	OSJNBA0043L24.15 PROTEIN	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G089880.1	Chy4G089880.1	mRNA