Chy4G089280 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G089280
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Reticulon-like protein
Location	chrH04: 26996385 .. 26997898 (-)
RNA-Seq Expression	Chy4G089280
Synteny	Chy4G089280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCCTCCGATCGTTTATTTTGTAAGCAGCGAACCCTTCATGAAATTGTTGGCGGCGGTATTGGTATGTTAAGATCTACTTATTTCTGGGTTTTTTTTTTCCTTGATGGTGGATCCTTTTAAATTTCTTTTGGATTGCTCTATTTCGATTCTCTATTGACCTTGCTGTTGAATTTCGTAGCAGTGATGGGAAATTTTTAATCCATCAACTATTTTCTTCTTTTCTTCATCCCAAATGAAATTCTTGCTGTGGATTCTGCTTTTCACTGCAGCTGCTAGAGTTCTAGGATCCATTTCTTTTGCTATAAAATCACTGATTGGATTTAAGTTTTGAGTTTTTAATCTGTTCAGTTGCAGATGTAATTCTTTGGAGACGGAAGAATCTAACTGTGGGGATATTGTTAATAACGTTGGCGACTTGGTTGGTGTTTGAGAGATGTGGTTACACACTTTTGTCTTTAATCTCCAGTGTTCTACTTCTTCTTGTTACCATTATTTTTCTCTGGGCCAAATCTGCTTCCATTCTCAACAGGTAAGTAATCGGAGATTGCCTCTTGACTTGCCTGTTATAAACTATCTCTTCAATTTGAATATCAACGAAGAACGGTGAACTGATACATAAGTTTGAGAATGCATGATCTTTAATAGATAAGAGGCATTTCCCTATTGGATTTGTCAATGGTCTTGAATAATGATTAGGTCCTGGTTCAAATTCTCTAGTTTTTCAACTACTTAATCTCTTAATTTGTCCTTGCTTTCTTTTACATTTGACGAACATTTTGGGATTTTTACATCCGTGAGTTTCATTCACTTAGTAATATTATGAGATGTGTAAATGCATTCGGTAGTTTTCAAGCATTCTAAAACTTACCAATTTAAAATATAGTATTTAGTTTTTGATTCCCTGCTGTCTCCTGGGTTCAGAAGTGAAAATTGTTCTTGAGTTTCTGTTTTTCCAGGCTTCCTTAGTTGCATGCTAATCAAGTGTAGCTTAACTTCTAAGTACTTGGATTAAGATTACTTCTGAATCTGCTACTTTTCTTCCTGAACAGACCAGCGCCGCCTCTTCCTGAGTTGTATCTCTCAGAAGATATGGTAAACGAAGCTGCATCTTTCATCCGTTCCCATGTGAATACATTTCTGTCTGTTTCACAAGATATAGCCATGGGAAAAGACCCCAGGTTGTTCTTCAAAGTAGCTGCTTGCCTGTGGCTGATCTCAGTTATCAGTGGCTTGACTGATATTATCACTTTGGCTTACACCAGTAAGTTTTCAATTTTCAGTGTCCACAATTGGACGATGATCAATGGAATTCATAGACATTTTTTCTCTCTATGACAGGCCTTCTACTCGTGCTTACAATCCCCGCATTGTATGAGAAGTATGAAGATTATGTAGATAGACATGCCATATTGATGTACAGAAAATTGTATCAGTTTTATGTGAAATTGGATGAGATGCGAGTTCTGACATACCAACAATGGATTTTGGAGAAAGAAAAACTGAGCTGA

mRNA sequence

ATGGGTTCCTCCGATCGTTTATTTTGTAAGCAGCGAACCCTTCATGAAATTGTTGGCGGCGGTATTGTTGCAGATGTAATTCTTTGGAGACGGAAGAATCTAACTGTGGGGATATTGTTAATAACGTTGGCGACTTGGTTGGTGTTTGAGAGATGTGGTTACACACTTTTGTCTTTAATCTCCAGTGTTCTACTTCTTCTTGTTACCATTATTTTTCTCTGGGCCAAATCTGCTTCCATTCTCAACAGACCAGCGCCGCCTCTTCCTGAGTTGTATCTCTCAGAAGATATGGTAAACGAAGCTGCATCTTTCATCCGTTCCCATGTGAATACATTTCTGTCTGTTTCACAAGATATAGCCATGGGAAAAGACCCCAGGTTGTTCTTCAAAGTAGCTGCTTGCCTGTGGCTGATCTCAGTTATCAGTGGCTTGACTGATATTATCACTTTGGCTTACACCAGCCTTCTACTCGTGCTTACAATCCCCGCATTGTATGAGAAGTATGAAGATTATGTAGATAGACATGCCATATTGATGTACAGAAAATTGTATCAGTTTTATGTGAAATTGGATGAGATGCGAGTTCTGACATACCAACAATGGATTTTGGAGAAAGAAAAACTGAGCTGA

Coding sequence (CDS)

ATGGGTTCCTCCGATCGTTTATTTTGTAAGCAGCGAACCCTTCATGAAATTGTTGGCGGCGGTATTGTTGCAGATGTAATTCTTTGGAGACGGAAGAATCTAACTGTGGGGATATTGTTAATAACGTTGGCGACTTGGTTGGTGTTTGAGAGATGTGGTTACACACTTTTGTCTTTAATCTCCAGTGTTCTACTTCTTCTTGTTACCATTATTTTTCTCTGGGCCAAATCTGCTTCCATTCTCAACAGACCAGCGCCGCCTCTTCCTGAGTTGTATCTCTCAGAAGATATGGTAAACGAAGCTGCATCTTTCATCCGTTCCCATGTGAATACATTTCTGTCTGTTTCACAAGATATAGCCATGGGAAAAGACCCCAGGTTGTTCTTCAAAGTAGCTGCTTGCCTGTGGCTGATCTCAGTTATCAGTGGCTTGACTGATATTATCACTTTGGCTTACACCAGCCTTCTACTCGTGCTTACAATCCCCGCATTGTATGAGAAGTATGAAGATTATGTAGATAGACATGCCATATTGATGTACAGAAAATTGTATCAGTTTTATGTGAAATTGGATGAGATGCGAGTTCTGACATACCAACAATGGATTTTGGAGAAAGAAAAACTGAGCTGA

Protein sequence

MGSSDRLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLISSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIAMGKDPRLFFKVAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILMYRKLYQFYVKLDEMRVLTYQQWILEKEKLS*

Homology

[Close]

BLAST of Chy4G089280 vs. ExPASy Swiss-Prot
Match: Q9M392 (Reticulon-like protein B12 OS=Arabidopsis thaliana OX=3702 GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 9.5e-54
Identity = 106/189 (56.08%), Postives = 147/189 (77.78%), Query Frame = 0


Query: 3   SSDRLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLISS 62
           SSD+LF + RT+HEI+GGGIVADV+LWR+KN++VGI+ +T+A+W+VFE   YT+ +LISS
Sbjct: 4   SSDKLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISS 63

Query: 63  VLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIAMG 122
           VLLLL++I+FLW+KSASILNRP+PPLPE  +SE M  EA+ ++R HVN  L VS DIAM 
Sbjct: 64  VLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMA 123

Query: 123 KDPRLFFKVAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILMYRK 182
           +D  L+ KVA  L+L+S+I  L D  TL +TS+L+V+T+PA YE+YEDY+      +  K
Sbjct: 124 RDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYIVGSIEFICNK 183

Query: 183 LYQFYVKLD 192
             + Y++L+
Sbjct: 184 TRELYLRLE 192

[Close]

BLAST of Chy4G089280 vs. ExPASy Swiss-Prot
Match: Q8GYH6 (Reticulon-like protein B16 OS=Arabidopsis thaliana OX=3702 GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.1e-38
Identity = 90/206 (43.69%), Postives = 133/206 (64.56%), Query Frame = 0


Query: 3   SSD-RLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLIS 62
           SSD RL  +Q T+H+ +GGG  AD++LWRR++L++G+++I+   WL+FE  G   LS+ S
Sbjct: 20  SSDYRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSS 79

Query: 63  SVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIAM 122
            VLL+++ I F+ A+ ++  NR    LPEL LSE+MVN AA+  R  +N  L ++ D+ +
Sbjct: 80  DVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTV 139

Query: 123 GKDPRLFFKVAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILMYR 182
           G D RLFFKV  CLWL+S I     + TL Y   +L +TIPALY KY+  VD+    ++R
Sbjct: 140 GNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHR 199

Query: 183 KLYQFYVKLDEMRVLTYQQWILEKEK 208
           +L   Y  +DE  V++   W L K+K
Sbjct: 200 RLSHHYKIVDE-NVISRLSWSLSKDK 224

[Close]

BLAST of Chy4G089280 vs. ExPASy Swiss-Prot
Match: Q9LT71 (Reticulon-like protein B11 OS=Arabidopsis thaliana OX=3702 GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.7e-34
Identity = 72/161 (44.72%), Postives = 110/161 (68.32%), Query Frame = 0


Query: 13  TLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLISSVLLLLVTIIF 72
           ++H+ +G G VAD++LWR +   V +L+ +   W +FER GY LLS +S+VLLLLV I F
Sbjct: 12  SVHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFF 71

Query: 73  LWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIAMGKDPRLFFKVA 132
           LWAKSA++LNRP PP+P + + E+  N+AA  +R  +N  LS++ DI + ++P    +V+
Sbjct: 72  LWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVS 131

Query: 133 ACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVD 174
             LW IS +  L + +TL Y  +LL L+ P +YEKY+D++D
Sbjct: 132 LVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID 172

[Close]

BLAST of Chy4G089280 vs. ExPASy Swiss-Prot
Match: Q9FFS0 (Reticulon-like protein B4 OS=Arabidopsis thaliana OX=3702 GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-30
Identity = 68/187 (36.36%), Postives = 118/187 (63.10%), Query Frame = 0


Query: 6   RLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLISSVLL 65
           RLF +++ +H+++GGG  AD+ LWR K ++ G+L    A+W++FE   Y LL+ +    +
Sbjct: 51  RLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAI 110

Query: 66  LLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIAMGKDP 125
             +  +FLW+ + + +++  P +PE+++ ED + +  S +R  +N  L++ ++IA GKD 
Sbjct: 111 FALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDV 170

Query: 126 RLFFKVAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILMYRKLYQ 185
           + F  V A LW++S+I    + +TL YT+ +L+ TIP LYEKYED VD +     R++ +
Sbjct: 171 KKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKK 230

Query: 186 FYVKLDE 193
            Y  LDE
Sbjct: 231 QYAVLDE 237

[Close]

BLAST of Chy4G089280 vs. ExPASy Swiss-Prot
Match: Q9SH59 (Reticulon-like protein B3 OS=Arabidopsis thaliana OX=3702 GN=RTNLB3 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.6e-30
Identity = 68/186 (36.56%), Postives = 117/186 (62.90%), Query Frame = 0


Query: 6   RLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLISSVLL 65
           RLF +++ LH++ GGG  AD+ LWR K ++ G+L     +W++FE   Y LL+L   + +
Sbjct: 47  RLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISI 106

Query: 66  LLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIAMGKDP 125
           L + ++FLW+ +++ +++    +PE+++ ED+V + AS +R  +N   +V +DIA G+D 
Sbjct: 107 LALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDL 166

Query: 126 RLFFKVAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILMYRKLYQ 185
           + F  V A LW++S +    + +TL Y + +L+ TIP LYEKYED VD       R++ +
Sbjct: 167 KKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKK 226

Query: 186 FYVKLD 192
            YV+ D
Sbjct: 227 QYVEFD 232

[Close]

BLAST of Chy4G089280 vs. ExPASy TrEMBL
Match: A0A5D3DMY4 (Reticulon-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001110 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 4.2e-105
Identity = 203/209 (97.13%), Postives = 206/209 (98.56%), Query Frame = 0


Query: 1   MGSSDRLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLI 60
           MGSSDRLFC+QRTLHEIVGGGIVADVILWRRKNLT GILLITLATWLVFERCGYTLLSLI
Sbjct: 1   MGSSDRLFCRQRTLHEIVGGGIVADVILWRRKNLTAGILLITLATWLVFERCGYTLLSLI 60

Query: 61  SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIA 120
           SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNT LSVSQDIA
Sbjct: 61  SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTLLSVSQDIA 120

Query: 121 MGKDPRLFFKVAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILMY 180
           MGKDP+LFFKVAACLWLISVISGLTDIITL YTSLLLVLTIPALYEKYEDYVD+HAILMY
Sbjct: 121 MGKDPKLFFKVAACLWLISVISGLTDIITLGYTSLLLVLTIPALYEKYEDYVDKHAILMY 180

Query: 181 RKLYQFYVKLDEMRVLTYQQWILEKEKLS 210
           RKLYQFYVKLDEMRVLTYQQWILEKEKLS
Sbjct: 181 RKLYQFYVKLDEMRVLTYQQWILEKEKLS 209

[Close]

BLAST of Chy4G089280 vs. ExPASy TrEMBL
Match: A0A1S3B6E8 (Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103486331 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 4.2e-105
Identity = 203/209 (97.13%), Postives = 206/209 (98.56%), Query Frame = 0


Query: 1   MGSSDRLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLI 60
           MGSSDRLFC+QRTLHEIVGGGIVADVILWRRKNLT GILLITLATWLVFERCGYTLLSLI
Sbjct: 1   MGSSDRLFCRQRTLHEIVGGGIVADVILWRRKNLTAGILLITLATWLVFERCGYTLLSLI 60

Query: 61  SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIA 120
           SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNT LSVSQDIA
Sbjct: 61  SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTLLSVSQDIA 120

Query: 121 MGKDPRLFFKVAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILMY 180
           MGKDP+LFFKVAACLWLISVISGLTDIITL YTSLLLVLTIPALYEKYEDYVD+HAILMY
Sbjct: 121 MGKDPKLFFKVAACLWLISVISGLTDIITLGYTSLLLVLTIPALYEKYEDYVDKHAILMY 180

Query: 181 RKLYQFYVKLDEMRVLTYQQWILEKEKLS 210
           RKLYQFYVKLDEMRVLTYQQWILEKEKLS
Sbjct: 181 RKLYQFYVKLDEMRVLTYQQWILEKEKLS 209

[Close]

BLAST of Chy4G089280 vs. ExPASy TrEMBL
Match: A0A0A0LFE7 (Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G732580 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 7.2e-105
Identity = 203/209 (97.13%), Postives = 207/209 (99.04%), Query Frame = 0


Query: 1   MGSSDRLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLI 60
           MGSSDRLFCKQRTLHEIVGGGIVADVILWRRKNLT+GILLITLATWLVFERCGYTLLSLI
Sbjct: 1   MGSSDRLFCKQRTLHEIVGGGIVADVILWRRKNLTMGILLITLATWLVFERCGYTLLSLI 60

Query: 61  SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIA 120
           SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRS VN FLSV+QDIA
Sbjct: 61  SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSRVNAFLSVTQDIA 120

Query: 121 MGKDPRLFFKVAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILMY 180
           MGKDPRLFFKVAACLWLISVISGLTD+ITLAYTSLLLVLTIPALYEKYEDYVDRHAILMY
Sbjct: 121 MGKDPRLFFKVAACLWLISVISGLTDMITLAYTSLLLVLTIPALYEKYEDYVDRHAILMY 180

Query: 181 RKLYQFYVKLDEMRVLTYQQWILEKEKLS 210
           +KLYQFYVKLDEMRVLTYQQWILEKEKLS
Sbjct: 181 KKLYQFYVKLDEMRVLTYQQWILEKEKLS 209

[Close]

BLAST of Chy4G089280 vs. ExPASy TrEMBL
Match: A0A5A7TLS2 (Reticulon-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G004970 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.0e-103
Identity = 203/210 (96.67%), Postives = 206/210 (98.10%), Query Frame = 0


Query: 1   MGSSDRLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLI 60
           MGSSDRLFC+QRTLHEIVGGGIVADVILWRRKNLT GILLITLATWLVFERCGYTLLSLI
Sbjct: 1   MGSSDRLFCRQRTLHEIVGGGIVADVILWRRKNLTAGILLITLATWLVFERCGYTLLSLI 60

Query: 61  SSVLLLLVTIIFLWAKSASILN-RPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDI 120
           SSVLLLLVTIIFLWAKSASILN RPAPPLPELYLSEDMVNEAASFIRSHVNT LSVSQDI
Sbjct: 61  SSVLLLLVTIIFLWAKSASILNSRPAPPLPELYLSEDMVNEAASFIRSHVNTLLSVSQDI 120

Query: 121 AMGKDPRLFFKVAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILM 180
           AMGKDP+LFFKVAACLWLISVISGLTDIITL YTSLLLVLTIPALYEKYEDYVD+HAILM
Sbjct: 121 AMGKDPKLFFKVAACLWLISVISGLTDIITLGYTSLLLVLTIPALYEKYEDYVDKHAILM 180

Query: 181 YRKLYQFYVKLDEMRVLTYQQWILEKEKLS 210
           YRKLYQFYVKLDEMRVLTYQQWILEKEKLS
Sbjct: 181 YRKLYQFYVKLDEMRVLTYQQWILEKEKLS 210

[Close]

BLAST of Chy4G089280 vs. ExPASy TrEMBL
Match: A0A1S4DUP5 (Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103486331 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.1e-102
Identity = 201/209 (96.17%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MGSSDRLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLI 60
           MGSSDRLFC+QRTLHEIVGGGI  DVILWRRKNLT GILLITLATWLVFERCGYTLLSLI
Sbjct: 1   MGSSDRLFCRQRTLHEIVGGGI--DVILWRRKNLTAGILLITLATWLVFERCGYTLLSLI 60

Query: 61  SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIA 120
           SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNT LSVSQDIA
Sbjct: 61  SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTLLSVSQDIA 120

Query: 121 MGKDPRLFFKVAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILMY 180
           MGKDP+LFFKVAACLWLISVISGLTDIITL YTSLLLVLTIPALYEKYEDYVD+HAILMY
Sbjct: 121 MGKDPKLFFKVAACLWLISVISGLTDIITLGYTSLLLVLTIPALYEKYEDYVDKHAILMY 180

Query: 181 RKLYQFYVKLDEMRVLTYQQWILEKEKLS 210
           RKLYQFYVKLDEMRVLTYQQWILEKEKLS
Sbjct: 181 RKLYQFYVKLDEMRVLTYQQWILEKEKLS 207

[Close]

BLAST of Chy4G089280 vs. NCBI nr
Match: XP_008442476.1 (PREDICTED: reticulon-like protein B12 isoform X1 [Cucumis melo] >TYK24993.1 reticulon-like protein B12 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 393 bits (1009), Expect = 2.11e-137
Identity = 203/209 (97.13%), Postives = 206/209 (98.56%), Query Frame = 0


Query: 1   MGSSDRLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLI 60
           MGSSDRLFC+QRTLHEIVGGGIVADVILWRRKNLT GILLITLATWLVFERCGYTLLSLI
Sbjct: 1   MGSSDRLFCRQRTLHEIVGGGIVADVILWRRKNLTAGILLITLATWLVFERCGYTLLSLI 60

Query: 61  SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIA 120
           SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNT LSVSQDIA
Sbjct: 61  SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTLLSVSQDIA 120

Query: 121 MGKDPRLFFKVAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILMY 180
           MGKDP+LFFKVAACLWLISVISGLTDIITL YTSLLLVLTIPALYEKYEDYVD+HAILMY
Sbjct: 121 MGKDPKLFFKVAACLWLISVISGLTDIITLGYTSLLLVLTIPALYEKYEDYVDKHAILMY 180

Query: 181 RKLYQFYVKLDEMRVLTYQQWILEKEKLS 209
           RKLYQFYVKLDEMRVLTYQQWILEKEKLS
Sbjct: 181 RKLYQFYVKLDEMRVLTYQQWILEKEKLS 209

[Close]

BLAST of Chy4G089280 vs. NCBI nr
Match: XP_004137740.1 (reticulon-like protein B12 [Cucumis sativus] >KGN58801.1 hypothetical protein Csa_001500 [Cucumis sativus])

HSP 1 Score: 392 bits (1007), Expect = 4.27e-137
Identity = 203/209 (97.13%), Postives = 207/209 (99.04%), Query Frame = 0


Query: 1   MGSSDRLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLI 60
           MGSSDRLFCKQRTLHEIVGGGIVADVILWRRKNLT+GILLITLATWLVFERCGYTLLSLI
Sbjct: 1   MGSSDRLFCKQRTLHEIVGGGIVADVILWRRKNLTMGILLITLATWLVFERCGYTLLSLI 60

Query: 61  SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIA 120
           SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRS VN FLSV+QDIA
Sbjct: 61  SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSRVNAFLSVTQDIA 120

Query: 121 MGKDPRLFFKVAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILMY 180
           MGKDPRLFFKVAACLWLISVISGLTD+ITLAYTSLLLVLTIPALYEKYEDYVDRHAILMY
Sbjct: 121 MGKDPRLFFKVAACLWLISVISGLTDMITLAYTSLLLVLTIPALYEKYEDYVDRHAILMY 180

Query: 181 RKLYQFYVKLDEMRVLTYQQWILEKEKLS 209
           +KLYQFYVKLDEMRVLTYQQWILEKEKLS
Sbjct: 181 KKLYQFYVKLDEMRVLTYQQWILEKEKLS 209

[Close]

BLAST of Chy4G089280 vs. NCBI nr
Match: KAA0044144.1 (reticulon-like protein B12 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 388 bits (997), Expect = 1.48e-135
Identity = 203/210 (96.67%), Postives = 206/210 (98.10%), Query Frame = 0


Query: 1   MGSSDRLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLI 60
           MGSSDRLFC+QRTLHEIVGGGIVADVILWRRKNLT GILLITLATWLVFERCGYTLLSLI
Sbjct: 1   MGSSDRLFCRQRTLHEIVGGGIVADVILWRRKNLTAGILLITLATWLVFERCGYTLLSLI 60

Query: 61  SSVLLLLVTIIFLWAKSASILN-RPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDI 120
           SSVLLLLVTIIFLWAKSASILN RPAPPLPELYLSEDMVNEAASFIRSHVNT LSVSQDI
Sbjct: 61  SSVLLLLVTIIFLWAKSASILNSRPAPPLPELYLSEDMVNEAASFIRSHVNTLLSVSQDI 120

Query: 121 AMGKDPRLFFKVAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILM 180
           AMGKDP+LFFKVAACLWLISVISGLTDIITL YTSLLLVLTIPALYEKYEDYVD+HAILM
Sbjct: 121 AMGKDPKLFFKVAACLWLISVISGLTDIITLGYTSLLLVLTIPALYEKYEDYVDKHAILM 180

Query: 181 YRKLYQFYVKLDEMRVLTYQQWILEKEKLS 209
           YRKLYQFYVKLDEMRVLTYQQWILEKEKLS
Sbjct: 181 YRKLYQFYVKLDEMRVLTYQQWILEKEKLS 210

[Close]

BLAST of Chy4G089280 vs. NCBI nr
Match: XP_016899688.1 (PREDICTED: reticulon-like protein B12 isoform X2 [Cucumis melo])

HSP 1 Score: 385 bits (988), Expect = 3.13e-134
Identity = 201/209 (96.17%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MGSSDRLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLI 60
           MGSSDRLFC+QRTLHEIVGGGI  DVILWRRKNLT GILLITLATWLVFERCGYTLLSLI
Sbjct: 1   MGSSDRLFCRQRTLHEIVGGGI--DVILWRRKNLTAGILLITLATWLVFERCGYTLLSLI 60

Query: 61  SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIA 120
           SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNT LSVSQDIA
Sbjct: 61  SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTLLSVSQDIA 120

Query: 121 MGKDPRLFFKVAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILMY 180
           MGKDP+LFFKVAACLWLISVISGLTDIITL YTSLLLVLTIPALYEKYEDYVD+HAILMY
Sbjct: 121 MGKDPKLFFKVAACLWLISVISGLTDIITLGYTSLLLVLTIPALYEKYEDYVDKHAILMY 180

Query: 181 RKLYQFYVKLDEMRVLTYQQWILEKEKLS 209
           RKLYQFYVKLDEMRVLTYQQWILEKEKLS
Sbjct: 181 RKLYQFYVKLDEMRVLTYQQWILEKEKLS 207

[Close]

BLAST of Chy4G089280 vs. NCBI nr
Match: XP_038904646.1 (reticulon-like protein B12 [Benincasa hispida])

HSP 1 Score: 385 bits (988), Expect = 3.36e-134
Identity = 199/209 (95.22%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MGSSDRLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLI 60
           MGSSDRLFC+QRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSL+
Sbjct: 1   MGSSDRLFCRQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLV 60

Query: 61  SSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIA 120
           SSVLLLLVTIIFLWAKSASILNRPAPPLPEL+LSEDMVNEAASFIRS VNT LSVSQDIA
Sbjct: 61  SSVLLLLVTIIFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSRVNTLLSVSQDIA 120

Query: 121 MGKDPRLFFKVAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILMY 180
           MGKDPRLFFKVAACLWLISVISGLTD+ITL YTSLLLVLTIPALYEKYEDYVDRH ILMY
Sbjct: 121 MGKDPRLFFKVAACLWLISVISGLTDLITLGYTSLLLVLTIPALYEKYEDYVDRHVILMY 180

Query: 181 RKLYQFYVKLDEMRVLTYQQWILEKEKLS 209
           RKL+QFYVKLDE RVLTYQQWILEKEKLS
Sbjct: 181 RKLHQFYVKLDEKRVLTYQQWILEKEKLS 209

[Close]

BLAST of Chy4G089280 vs. TAIR 10
Match: AT3G54120.1 (Reticulon family protein )

HSP 1 Score: 211.5 bits (537), Expect = 6.7e-55
Identity = 106/189 (56.08%), Postives = 147/189 (77.78%), Query Frame = 0


Query: 3   SSDRLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLISS 62
           SSD+LF + RT+HEI+GGGIVADV+LWR+KN++VGI+ +T+A+W+VFE   YT+ +LISS
Sbjct: 4   SSDKLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISS 63

Query: 63  VLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIAMG 122
           VLLLL++I+FLW+KSASILNRP+PPLPE  +SE M  EA+ ++R HVN  L VS DIAM 
Sbjct: 64  VLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMA 123

Query: 123 KDPRLFFKVAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILMYRK 182
           +D  L+ KVA  L+L+S+I  L D  TL +TS+L+V+T+PA YE+YEDY+      +  K
Sbjct: 124 RDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYIVGSIEFICNK 183

Query: 183 LYQFYVKLD 192
             + Y++L+
Sbjct: 184 TRELYLRLE 192

[Close]

BLAST of Chy4G089280 vs. TAIR 10
Match: AT3G10915.2 (Reticulon family protein )

HSP 1 Score: 161.4 bits (407), Expect = 8.0e-40
Identity = 90/206 (43.69%), Postives = 133/206 (64.56%), Query Frame = 0


Query: 3   SSD-RLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLIS 62
           SSD RL  +Q T+H+ +GGG  AD++LWRR++L++G+++I+   WL+FE  G   LS+ S
Sbjct: 20  SSDYRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSS 79

Query: 63  SVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIAM 122
            VLL+++ I F+ A+ ++  NR    LPEL LSE+MVN AA+  R  +N  L ++ D+ +
Sbjct: 80  DVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTV 139

Query: 123 GKDPRLFFKVAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILMYR 182
           G D RLFFKV  CLWL+S I     + TL Y   +L +TIPALY KY+  VD+    ++R
Sbjct: 140 GNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHR 199

Query: 183 KLYQFYVKLDEMRVLTYQQWILEKEK 208
           +L   Y  +DE  V++   W L K+K
Sbjct: 200 RLSHHYKIVDE-NVISRLSWSLSKDK 224

[Close]

BLAST of Chy4G089280 vs. TAIR 10
Match: AT3G10915.4 (Reticulon family protein )

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-38
Identity = 90/207 (43.48%), Postives = 133/207 (64.25%), Query Frame = 0


Query: 3   SSD-RLFCKQRTLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLIS 62
           SSD RL  +Q T+H+ +GGG  AD++LWRR++L++G+++I+   WL+FE  G   LS+ S
Sbjct: 20  SSDYRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSS 79

Query: 63  SVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIAM 122
            VLL+++ I F+ A+ ++  NR    LPEL LSE+MVN AA+  R  +N  L ++ D+ +
Sbjct: 80  DVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTV 139

Query: 123 GKDPRLFFK-VAACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVDRHAILMY 182
           G D RLFFK V  CLWL+S I     + TL Y   +L +TIPALY KY+  VD+    ++
Sbjct: 140 GNDFRLFFKQVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIH 199

Query: 183 RKLYQFYVKLDEMRVLTYQQWILEKEK 208
           R+L   Y  +DE  V++   W L K+K
Sbjct: 200 RRLSHHYKIVDE-NVISRLSWSLSKDK 225

[Close]

BLAST of Chy4G089280 vs. TAIR 10
Match: AT3G19460.1 (Reticulon family protein )

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-35
Identity = 72/161 (44.72%), Postives = 110/161 (68.32%), Query Frame = 0


Query: 13  TLHEIVGGGIVADVILWRRKNLTVGILLITLATWLVFERCGYTLLSLISSVLLLLVTIIF 72
           ++H+ +G G VAD++LWR +   V +L+ +   W +FER GY LLS +S+VLLLLV I F
Sbjct: 12  SVHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFF 71

Query: 73  LWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSHVNTFLSVSQDIAMGKDPRLFFKVA 132
           LWAKSA++LNRP PP+P + + E+  N+AA  +R  +N  LS++ DI + ++P    +V+
Sbjct: 72  LWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVS 131

Query: 133 ACLWLISVISGLTDIITLAYTSLLLVLTIPALYEKYEDYVD 174
             LW IS +  L + +TL Y  +LL L+ P +YEKY+D++D
Sbjct: 132 LVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID 172

[Close]

BLAST of Chy4G089280 vs. TAIR 10
Match: AT3G10915.5 (Reticulon family protein )

HSP 1 Score: 146.7 bits (369), Expect = 2.0e-35
Identity = 91/229 (39.74%), Postives = 134/229 (58.52%), Query Frame = 0


Query: 3   SSD-RLFCKQRTLHEIVGGG----------------------IVADVILWRRKNLTVGIL 62
           SSD RL  +Q T+H+ +GGG                      I AD++LWRR++L++G++
Sbjct: 20  SSDYRLLGRQITVHQFMGGGKGEFFFPEFHFGYSRKWKTWQFIAADLLLWRRRHLSLGVI 79

Query: 63  LITLATWLVFERCGYTLLSLISSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVN 122
           +I+   WL+FE  G   LS+ S VLL+++ I F+ A+ ++  NR    LPEL LSE+MVN
Sbjct: 80  IISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVN 139

Query: 123 EAASFIRSHVNTFLSVSQDIAMGKDPRLFFK-VAACLWLISVISGLTDIITLAYTSLLLV 182
            AA+  R  +N  L ++ D+ +G D RLFFK V  CLWL+S I     + TL Y   +L 
Sbjct: 140 SAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAIGSYISLCTLLYIGTILS 199

Query: 183 LTIPALYEKYEDYVDRHAILMYRKLYQFYVKLDEMRVLTYQQWILEKEK 208
           +TIPALY KY+  VD+    ++R+L   Y  +DE  V++   W L K+K
Sbjct: 200 VTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDE-NVISRLSWSLSKDK 247

The following BLAST results are available for this feature:

BLAST of Chy4G089280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M392	9.5e-54	56.08	Reticulon-like protein B12 OS=Arabidopsis thaliana OX=3702 GN=RTNLB12 PE=2 SV=1	[more]
Q8GYH6	1.1e-38	43.69	Reticulon-like protein B16 OS=Arabidopsis thaliana OX=3702 GN=RTNLB16 PE=2 SV=1	[more]
Q9LT71	1.7e-34	44.72	Reticulon-like protein B11 OS=Arabidopsis thaliana OX=3702 GN=RTNLB11 PE=2 SV=1	[more]
Q9FFS0	1.1e-30	36.36	Reticulon-like protein B4 OS=Arabidopsis thaliana OX=3702 GN=RTNLB4 PE=1 SV=1	[more]
Q9SH59	5.6e-30	36.56	Reticulon-like protein B3 OS=Arabidopsis thaliana OX=3702 GN=RTNLB3 PE=2 SV=1	[more]

BLAST of Chy4G089280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DMY4	4.2e-105	97.13	Reticulon-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3...	[more]
A0A1S3B6E8	4.2e-105	97.13	Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103486331 PE=4 SV=1	[more]
A0A0A0LFE7	7.2e-105	97.13	Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G732580 PE=4 SV=1	[more]
A0A5A7TLS2	1.0e-103	96.67	Reticulon-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2...	[more]
A0A1S4DUP5	1.1e-102	96.17	Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103486331 PE=4 SV=1	[more]

BLAST of Chy4G089280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442476.1	2.11e-137	97.13	PREDICTED: reticulon-like protein B12 isoform X1 [Cucumis melo] >TYK24993.1 reti...	[more]
XP_004137740.1	4.27e-137	97.13	reticulon-like protein B12 [Cucumis sativus] >KGN58801.1 hypothetical protein Cs...	[more]
KAA0044144.1	1.48e-135	96.67	reticulon-like protein B12 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_016899688.1	3.13e-134	96.17	PREDICTED: reticulon-like protein B12 isoform X2 [Cucumis melo]	[more]
XP_038904646.1	3.36e-134	95.22	reticulon-like protein B12 [Benincasa hispida]	[more]

BLAST of Chy4G089280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54120.1	6.7e-55	56.08	Reticulon family protein	[more]
AT3G10915.2	8.0e-40	43.69	Reticulon family protein	[more]
AT3G10915.4	2.0e-38	43.48	Reticulon family protein	[more]
AT3G19460.1	1.2e-35	44.72	Reticulon family protein	[more]
AT3G10915.5	2.0e-35	39.74	Reticulon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 23..176 e-value: 2.7E-49 score: 167.1
IPR003388	Reticulon	PROSITE	PS50845	RETICULON	coord: 23..192 score: 30.441601
None	No IPR available	PANTHER	PTHR10994:SF65	RETICULON-LIKE PROTEIN B12	coord: 6..207
IPR045064	Reticulon-like protein, plant	PANTHER	PTHR10994	RETICULON	coord: 6..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G089280.1	Chy4G089280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane