Chy4G088950 (gene) Cucumber (hystrix) v1

Overview
NameChy4G088950
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionLegume-specific protein
LocationchrH04: 26823935 .. 26824198 (+)
RNA-Seq ExpressionChy4G088950
SyntenyChy4G088950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGTCTAATTCCATTTGTTTACAAAGCTATTGTTCAATACAAGAACGAAAAACAAGTACCCGCCATCCGATCTTGGCTTTGCGATTCCCCTTCCACGTCCTACATCAGACTTCCCAGTGGTGATTCCGGCCGATTTCAACTCCAATCCGACGCCTCTCCTTCTTCAAAATCACCTACCTCTTCCACCACCCAGATTCTGGTTTCTACCGGAGTTCAATCGCCACTTCGCCATCTGACAACTCGACGGGTTGCTGCCTAA

mRNA sequence

ATGGAAGGTCTAATTCCATTTGTTTACAAAGCTATTGTTCAATACAAGAACGAAAAACAAGTACCCGCCATCCGATCTTGGCTTTGCGATTCCCCTTCCACGTCCTACATCAGACTTCCCAGTGGTGATTCCGGCCGATTTCAACTCCAATCCGACGCCTCTCCTTCTTCAAAATCACCTACCTCTTCCACCACCCAGATTCTGGTTTCTACCGGAGTTCAATCGCCACTTCGCCATCTGACAACTCGACGGGTTGCTGCCTAA

Coding sequence (CDS)

ATGGAAGGTCTAATTCCATTTGTTTACAAAGCTATTGTTCAATACAAGAACGAAAAACAAGTACCCGCCATCCGATCTTGGCTTTGCGATTCCCCTTCCACGTCCTACATCAGACTTCCCAGTGGTGATTCCGGCCGATTTCAACTCCAATCCGACGCCTCTCCTTCTTCAAAATCACCTACCTCTTCCACCACCCAGATTCTGGTTTCTACCGGAGTTCAATCGCCACTTCGCCATCTGACAACTCGACGGGTTGCTGCCTAA

Protein sequence

MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQLQSDASPSSKSPTSSTTQILVSTGVQSPLRHLTTRRVAA*
Homology
BLAST of Chy4G088950 vs. ExPASy TrEMBL
Match: A0A0A0LD26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733930 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.1e-37
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQLQSDASPSSKSP 60
          MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ QSDASPSSKSP
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 TSS-TTQILVSTGVQSPLRHLTTRRVAA 88
          TSS TTQILVSTGVQSPLRHLTTRRVAA
Sbjct: 61 TSSTTTQILVSTGVQSPLRHLTTRRVAA 88

BLAST of Chy4G088950 vs. ExPASy TrEMBL
Match: A0A5D3DNC7 (Legume-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001410 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.7e-37
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0

Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQLQSDASPSSKSP 60
          MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ QSDASPSSKSP
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 TSST--TQILVSTGVQSPLRHLTTRRVAA 88
          TSST  TQILVSTGVQSPLRHLTTRRVAA
Sbjct: 61 TSSTTATQILVSTGVQSPLRHLTTRRVAA 89

BLAST of Chy4G088950 vs. ExPASy TrEMBL
Match: K7MT87 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G187300 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.7e-21
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 0

Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQLQ------SDAS 60
          MEGLIPFVYKAI+QYK +K    I SWLC+SPS SY+RLP+GDSGRFQ+Q      S AS
Sbjct: 1  MEGLIPFVYKAIMQYKGDKDGHPIGSWLCESPSYSYMRLPAGDSGRFQIQAPASSFSAAS 60

Query: 61 PSSKSP-TSSTTQILVSTGVQSPLRHLTTRRVAA 88
          PSS +P +SS TQI+VS+GVQSP + LT RR+AA
Sbjct: 61 PSSTNPNSSSATQIIVSSGVQSPHQCLTHRRIAA 94

BLAST of Chy4G088950 vs. ExPASy TrEMBL
Match: A0A0B2P904 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_048924 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.7e-20
Identity = 61/94 (64.89%), Postives = 73/94 (77.66%), Query Frame = 0

Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQLQ------SDAS 60
          MEGLIPFVYKAI+QYK +K    I SWLC+SPS SY+RLP+GDSGRFQ+Q      S AS
Sbjct: 1  MEGLIPFVYKAIMQYKGDKDGHPIGSWLCESPSYSYMRLPAGDSGRFQIQAPASSFSAAS 60

Query: 61 PSSKSP-TSSTTQILVSTGVQSPLRHLTTRRVAA 88
          PSS +P +SS TQI+VS+GVQSP + LT R +AA
Sbjct: 61 PSSTNPNSSSATQIIVSSGVQSPHQCLTHRPIAA 94

BLAST of Chy4G088950 vs. ExPASy TrEMBL
Match: A0A0L9U5Z2 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g145400 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.7e-20
Identity = 59/92 (64.13%), Postives = 71/92 (77.17%), Query Frame = 0

Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQLQ-----SDASP 60
          MEGLIPFVYKAI+QYK   +   + SW+C+SPS SY+RLP GDSGRF +Q     S ASP
Sbjct: 1  MEGLIPFVYKAIMQYKGTGKEGPLGSWICESPSYSYMRLP-GDSGRFPIQAPPSFSAASP 60

Query: 61 SSKSPTSSTTQILVSTGVQSPLRHLTTRRVAA 88
          SS +PTSS TQI+VS+GVQSP + LT RR+AA
Sbjct: 61 SSNNPTSSATQIIVSSGVQSPHQCLTHRRIAA 91

BLAST of Chy4G088950 vs. NCBI nr
Match: KAA0044116.1 (legume-specific protein [Cucumis melo var. makuwa] >TYK25022.1 legume-specific protein [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (411), Expect = 3.92e-50
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0

Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQLQSDASPSSKSP 60
          MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ QSDASPSSKSP
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 TSSTT--QILVSTGVQSPLRHLTTRRVAA 87
          TSSTT  QILVSTGVQSPLRHLTTRRVAA
Sbjct: 61 TSSTTATQILVSTGVQSPLRHLTTRRVAA 89

BLAST of Chy4G088950 vs. NCBI nr
Match: KAE8650999.1 (hypothetical protein Csa_002313 [Cucumis sativus])

HSP 1 Score: 159 bits (402), Expect = 2.38e-47
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0

Query: 3   GLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQLQSDASPSSKSPTS 62
           GLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ QSDASPSSKSPTS
Sbjct: 109 GLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSPTS 168

Query: 63  STT-QILVSTGVQSPLRHLTTRRVAA 87
           STT QILVSTGVQSPLRHLTTRRVAA
Sbjct: 169 STTTQILVSTGVQSPLRHLTTRRVAA 194

BLAST of Chy4G088950 vs. NCBI nr
Match: KAG7017269.1 (hypothetical protein SDJN02_19132, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147 bits (371), Expect = 4.97e-44
Identity = 78/89 (87.64%), Postives = 82/89 (92.13%), Query Frame = 0

Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ--LQSDASPSSK 60
          MEG+IPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ    S ASPSSK
Sbjct: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQDGSYSAASPSSK 60

Query: 61 SPTSSTTQILVSTGVQSPLRHLTTRRVAA 87
          S +S+TTQIL+STGVQSPLRHLT RRVAA
Sbjct: 61 SASSTTTQILISTGVQSPLRHLTPRRVAA 89

BLAST of Chy4G088950 vs. NCBI nr
Match: KAG6580521.1 (hypothetical protein SDJN03_20523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145 bits (367), Expect = 2.02e-43
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ--LQSDASPSSK 60
          MEG+IPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ    S ASPSSK
Sbjct: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQDGSYSAASPSSK 60

Query: 61 SPTSSTTQILVSTGVQSPLRHLTTRRVAA 87
          S +S+TTQIL+STGVQSPLRHLT RRV A
Sbjct: 61 SASSTTTQILISTGVQSPLRHLTPRRVVA 89

BLAST of Chy4G088950 vs. NCBI nr
Match: KAG6596392.1 (hypothetical protein SDJN03_09572, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122 bits (306), Expect = 4.30e-34
Identity = 67/91 (73.63%), Postives = 73/91 (80.22%), Query Frame = 0

Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQLQSD----ASPS 60
          MEGLIPFVY+AIV YKN+KQVP IRSWL DSPS SYIRLPSGDSGRF  QSD    A+  
Sbjct: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLTDSPSASYIRLPSGDSGRFLFQSDGSYTATSP 60

Query: 61 SKSPTSSTTQILVSTGVQSPLRHLTTRRVAA 87
          SKS +S+ TQILV+TGVQSPLR L   RVAA
Sbjct: 61 SKSVSSTATQILVATGVQSPLRQLAPSRVAA 91

BLAST of Chy4G088950 vs. TAIR 10
Match: AT2G37750.1 (unknown protein; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 2.4e-06
Identity = 39/87 (44.83%), Postives = 49/87 (56.32%), Query Frame = 0

Query: 1  MEGLIPFVYKAIVQ--YKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQLQSDA----- 60
          MEGLIP VYKA++Q  Y NE Q            S+ Y+RLP GDSGRF ++SD      
Sbjct: 1  MEGLIPLVYKAVMQIRYGNESQ---------QLSSSYYVRLP-GDSGRF-VRSDLDVSGP 60

Query: 61 ---SPSSKSPTSSTTQILVSTGVQSPL 78
             S +  S ++STT   V  GVQSP+
Sbjct: 61 GSNSSNRASSSTSTTTFAVYAGVQSPV 76

BLAST of Chy4G088950 vs. TAIR 10
Match: AT5G02090.1 (unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.3e-04
Identity = 32/85 (37.65%), Postives = 40/85 (47.06%), Query Frame = 0

Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTS--YIRLPSGDSGRFQLQS------- 60
          MEGLIPF+YKAIV YK E    ++      SPS +  Y+RLP   S RF+          
Sbjct: 1  MEGLIPFLYKAIVMYKREGSFSSVLLSDHHSPSNAGYYMRLPGDSSSRFRTSDLRRFGTD 60

Query: 61 -----DASPSSKSPTSSTTQILVST 72
               + +PSS     ST  I   T
Sbjct: 61 RFGMLETTPSSSPSRVSTRNITKRT 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LD262.1e-3797.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733930 PE=4 SV=1[more]
A0A5D3DNC72.7e-3796.63Legume-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
K7MT872.7e-2165.96Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G187300 PE=4 SV=1[more]
A0A0B2P9041.7e-2064.89Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_048924 PE=4 SV=1[more]
A0A0L9U5Z28.7e-2064.13Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g145400 PE... [more]
Match NameE-valueIdentityDescription
KAA0044116.13.92e-5096.63legume-specific protein [Cucumis melo var. makuwa] >TYK25022.1 legume-specific p... [more]
KAE8650999.12.38e-4797.67hypothetical protein Csa_002313 [Cucumis sativus][more]
KAG7017269.14.97e-4487.64hypothetical protein SDJN02_19132, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6580521.12.02e-4386.52hypothetical protein SDJN03_20523, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6596392.14.30e-3473.63hypothetical protein SDJN03_09572, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
AT2G37750.12.4e-0644.83unknown protein; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bact... [more]
AT5G02090.11.3e-0437.65unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..73
NoneNo IPR availablePANTHERPTHR34670:SF10LEGUME-SPECIFIC PROTEINcoord: 1..87
NoneNo IPR availablePANTHERPTHR34670EXPRESSED PROTEINcoord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G088950.1Chy4G088950.1mRNA