Chy4G088280 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G088280
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH04: 26435511 .. 26435967 (+)
RNA-Seq Expression	Chy4G088280
Synteny	Chy4G088280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTTGTATCGTGGAAATTGAAGACGGTATATATATATATAGATCTATCCACACAAGTTCCAAGATATCTATATTCCATTATATTTATCGTATAAAAACTAATAAAGTAAAGGATTTAGTGAACAGGATACTTTTTAATATGGAATATTATTGTCTGTAGTACTTGGCTAAATCACTACTTCATAGTTAAGTATTAGTGGCAGTAGTGTGAAAGAATTAAATATAGGATAAAGTTTCCTTTCAATACCTGCAAGCTGCTGCTTGAAGGAAGTTGAGTGGTCTCAGTTGCGAATGGGATTCACCAATCTCATCATCACGGTAAGTGGGATAGAGATTTTCTTATCTGTAGGCATAATGATTGAGATATCTGAAGCAAGCAACGCAGTGGCCAATGGCGAGCGATCAAGTCAAAGCTCACAAAATAGGTACCCTGTTAAGATCTCAAACAGTTAG

mRNA sequence

ATGAAGTTTGTATCGTGGAAATTGAAGACGGAAGTTGAGTGGTCTCAGTTGCGAATGGGATTCACCAATCTCATCATCACGGTAAGTGGGATAGAGATTTTCTTATCTGTAGGCATAATGATTGAGATATCTGAAGCAAGCAACGCAGTGGCCAATGGCGAGCGATCAAGTCAAAGCTCACAAAATAGGTACCCTGTTAAGATCTCAAACAGTTAG

Coding sequence (CDS)

ATGAAGTTTGTATCGTGGAAATTGAAGACGGAAGTTGAGTGGTCTCAGTTGCGAATGGGATTCACCAATCTCATCATCACGGTAAGTGGGATAGAGATTTTCTTATCTGTAGGCATAATGATTGAGATATCTGAAGCAAGCAACGCAGTGGCCAATGGCGAGCGATCAAGTCAAAGCTCACAAAATAGGTACCCTGTTAAGATCTCAAACAGTTAG

Protein sequence

MKFVSWKLKTEVEWSQLRMGFTNLIITVSGIEIFLSVGIMIEISEASNAVANGERSSQSSQNRYPVKISNS*

Homology

[Close]

BLAST of Chy4G088280 vs. ExPASy TrEMBL
Match: A0A0A0LDU5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736600 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MKFVSWKLKTEVEWSQLRMGFTNLIITVSGIEIFLSVGIMIEISEASNAVANGERSSQSS 60
          MKFVSWKLKTEV+WSQL MGFTNLIITVSGIEIFL+VGI+IEISEASNAVANGERSSQSS
Sbjct: 1  MKFVSWKLKTEVKWSQLGMGFTNLIITVSGIEIFLTVGIIIEISEASNAVANGERSSQSS 60

Query: 61 QNRYPVKISNS 72
          QNRYPVKISNS
Sbjct: 61 QNRYPVKISNS 71

[Close]

BLAST of Chy4G088280 vs. NCBI nr
Match: KGN58912.1 (hypothetical protein Csa_000819 [Cucumis sativus])

HSP 1 Score: 127 bits (318), Expect = 1.85e-36
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MKFVSWKLKTEVEWSQLRMGFTNLIITVSGIEIFLSVGIMIEISEASNAVANGERSSQSS 60
          MKFVSWKLKTEV+WSQL MGFTNLIITVSGIEIFL+VGI+IEISEASNAVANGERSSQSS
Sbjct: 1  MKFVSWKLKTEVKWSQLGMGFTNLIITVSGIEIFLTVGIIIEISEASNAVANGERSSQSS 60

Query: 61 QNRYPVKISNS 71
          QNRYPVKISNS
Sbjct: 61 QNRYPVKISNS 71

The following BLAST results are available for this feature:

BLAST of Chy4G088280 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G088280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDU5	1.3e-26	94.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736600 PE=4 SV=1	[more]

BLAST of Chy4G088280 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58912.1	1.85e-36	94.37	hypothetical protein Csa_000819 [Cucumis sativus]	[more]

BLAST of Chy4G088280 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G088280.1	Chy4G088280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane