Chy4G088020 (gene) Cucumber (hystrix) v1

Overview
NameChy4G088020
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH04: 26260251 .. 26260649 (+)
RNA-Seq ExpressionChy4G088020
SyntenyChy4G088020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTACAGATTGATTGAAAATGTGAGACAATACCTAGATCAGAGGATTCAAGTCTTGAAAGTCAAACCAGAACTTCCATTCAAATTTCTATTGTGGAGTTTCACATTAGAAACAGCTTGTGTGCCAAATCAAAATGTGTACAGCTCCAGTAACAAAATCCAACTATATTATAGTGTCATTATTCATGTAAGAACATGCTTGCTACATCTCTTAGCGGACATTCATCGAGCACCTGGCGTGCAACATTTCAACATCGATAAAATTACAGAAACGGCGCAAATATTAATACATCACAAAAGTTTCTTTGAATTACAATGCCAAAACAATATTCAGAGTCTTAAACCCCTACATCAAGAGGAGGATACTCGGAGTTTGCATCGTCATATCATGCAGTGA

mRNA sequence

ATGACGTACAGATTGATTGAAAATGTGAGACAATACCTAGATCAGAGGATTCAAGTCTTGAAAGTCAAACCAGAACTTCCATTCAAATTTCTATTGTGGAGTTTCACATTAGAAACAGCTTGTGTGCCAAATCAAAATGTGTACAGCTCCAGTAACAAAATCCAACTATATTATAGTGTCATTATTCATGTAAGAACATGCTTGCTACATCTCTTAGCGGACATTCATCGAGCACCTGGCGTGCAACATTTCAACATCGATAAAATTACAGAAACGGCGCAAATATTAATACATCACAAAAGTTTCTTTGAATTACAATGCCAAAACAATATTCAGAGTCTTAAACCCCTACATCAAGAGGAGGATACTCGGAGTTTGCATCGTCATATCATGCAGTGA

Coding sequence (CDS)

ATGACGTACAGATTGATTGAAAATGTGAGACAATACCTAGATCAGAGGATTCAAGTCTTGAAAGTCAAACCAGAACTTCCATTCAAATTTCTATTGTGGAGTTTCACATTAGAAACAGCTTGTGTGCCAAATCAAAATGTGTACAGCTCCAGTAACAAAATCCAACTATATTATAGTGTCATTATTCATGTAAGAACATGCTTGCTACATCTCTTAGCGGACATTCATCGAGCACCTGGCGTGCAACATTTCAACATCGATAAAATTACAGAAACGGCGCAAATATTAATACATCACAAAAGTTTCTTTGAATTACAATGCCAAAACAATATTCAGAGTCTTAAACCCCTACATCAAGAGGAGGATACTCGGAGTTTGCATCGTCATATCATGCAGTGA

Protein sequence

MTYRLIENVRQYLDQRIQVLKVKPELPFKFLLWSFTLETACVPNQNVYSSSNKIQLYYSVIIHVRTCLLHLLADIHRAPGVQHFNIDKITETAQILIHHKSFFELQCQNNIQSLKPLHQEEDTRSLHRHIMQ*
Homology
[Close]
BLAST of Chy4G088020 vs. ExPASy TrEMBL
Match: A0A0A0LAV5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736905 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.8e-57
Identity = 116/123 (94.31%), Postives = 117/123 (95.12%), Query Frame = 0 

Query: 1   MTYRLIENVRQYLDQRIQVLKVKPELPFKFLLWSFTLETACVPNQNVYSSSNKIQLYYSV 60
           MTYRLIENVRQ LDQRIQVLKVKPELPFKFLL SFTLETACVPNQNVYSSSNKIQLYYSV
Sbjct: 1   MTYRLIENVRQCLDQRIQVLKVKPELPFKFLLCSFTLETACVPNQNVYSSSNKIQLYYSV 60

Query: 61  IIHVRTCLLHLLADIHRAPGVQHFNIDKITETAQILIHHKSFFELQCQNNIQSLKPLHQE 120
           II VRTCLLHLLADIHRAPGVQH NIDKITETAQILIHH SFFELQCQNNIQSL+ LHQE
Sbjct: 61  IIDVRTCLLHLLADIHRAPGVQHVNIDKITETAQILIHHISFFELQCQNNIQSLRRLHQE 120

Query: 121 EDT 124
           EDT
Sbjct: 121 EDT 123

[Close]
BLAST of Chy4G088020 vs. NCBI nr
Match: KGN58943.1 (hypothetical protein Csa_002609 [Cucumis sativus])

HSP 1 Score: 228 bits (582), Expect = 6.04e-75
Identity = 116/123 (94.31%), Postives = 117/123 (95.12%), Query Frame = 0 

Query: 1   MTYRLIENVRQYLDQRIQVLKVKPELPFKFLLWSFTLETACVPNQNVYSSSNKIQLYYSV 60
           MTYRLIENVRQ LDQRIQVLKVKPELPFKFLL SFTLETACVPNQNVYSSSNKIQLYYSV
Sbjct: 1   MTYRLIENVRQCLDQRIQVLKVKPELPFKFLLCSFTLETACVPNQNVYSSSNKIQLYYSV 60

Query: 61  IIHVRTCLLHLLADIHRAPGVQHFNIDKITETAQILIHHKSFFELQCQNNIQSLKPLHQE 120
           II VRTCLLHLLADIHRAPGVQH NIDKITETAQILIHH SFFELQCQNNIQSL+ LHQE
Sbjct: 61  IIDVRTCLLHLLADIHRAPGVQHVNIDKITETAQILIHHISFFELQCQNNIQSLRRLHQE 120

Query: 121 EDT 123
           EDT
Sbjct: 121 EDT 123

The following BLAST results are available for this feature:
BLAST of Chy4G088020 vs.
Match NameE-valueIdentityDescription
BLAST of Chy4G088020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAV57.8e-5794.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736905 PE=4 SV=1[more]
BLAST of Chy4G088020 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58943.16.04e-7594.31hypothetical protein Csa_002609 [Cucumis sativus][more]
BLAST of Chy4G088020 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G088020.1Chy4G088020.1mRNA