Chy4G086590 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G086590
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	protein LITTLE ZIPPER 4
Location	chrH04: 25308449 .. 25308667 (-)
RNA-Seq Expression	Chy4G086590
Synteny	Chy4G086590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGGCTAAACTCAGAGTTGTACTTGCAAAACTGTTACATAATGAAGGAAAATGAGAGACTGAGGAAGAAAGCTCAACTTTTGAACCAAGAAAATCAAGCTCTTCTTTCAGAACTGAAGCAGAAATTATCAAAAGGAAATTCAAAAGCCAATGCTTCAAAATCAATTCCTGATCTTAATCTTTCCTCTGCAAATCCTTCTAATTCTTCCAATTGA

mRNA sequence

ATGGAGAGGCTAAACTCAGAGTTGTACTTGCAAAACTGTTACATAATGAAGGAAAATGAGAGACTGAGGAAGAAAGCTCAACTTTTGAACCAAGAAAATCAAGCTCTTCTTTCAGAACTGAAGCAGAAATTATCAAAAGGAAATTCAAAAGCCAATGCTTCAAAATCAATTCCTGATCTTAATCTTTCCTCTGCAAATCCTTCTAATTCTTCCAATTGA

Coding sequence (CDS)

ATGGAGAGGCTAAACTCAGAGTTGTACTTGCAAAACTGTTACATAATGAAGGAAAATGAGAGACTGAGGAAGAAAGCTCAACTTTTGAACCAAGAAAATCAAGCTCTTCTTTCAGAACTGAAGCAGAAATTATCAAAAGGAAATTCAAAAGCCAATGCTTCAAAATCAATTCCTGATCTTAATCTTTCCTCTGCAAATCCTTCTAATTCTTCCAATTGA

Protein sequence

MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDLNLSSANPSNSSN*

Homology

[Close]

BLAST of Chy4G086590 vs. ExPASy Swiss-Prot
Match: Q56WL5 (Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana OX=3702 GN=ZPR4 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.4e-14
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLS--KGNSKANASKSIP 60
          MERLNS+LYLQNCYI+KENERLRKKAQ+LNQENQ LL ELKQKLS  K +S +N   +  
Sbjct: 1  MERLNSKLYLQNCYIIKENERLRKKAQILNQENQQLLFELKQKLSKTKNSSGSNQGNNNN 60

Query: 61 DLNLSSANPSN 70
          + NLSS++ ++
Sbjct: 61 NNNLSSSSSAS 71

[Close]

BLAST of Chy4G086590 vs. ExPASy Swiss-Prot
Match: Q9LXI8 (Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana OX=3702 GN=ZPR3 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-12
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+L+++NCYIMKENERLRKKA+LLNQENQ LL +LKQKLSK  +  N S +  D 
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSNNGSNN--DN 60

Query: 61 NLSSAN 67
            SSA+
Sbjct: 61 KSSSAS 64

[Close]

BLAST of Chy4G086590 vs. ExPASy TrEMBL
Match: A0A1S3B7E3 (protein LITTLE ZIPPER 4 OS=Cucumis melo OX=3656 GN=LOC103486597 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.9e-27
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NLSSANPSNSSN 73
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

[Close]

BLAST of Chy4G086590 vs. ExPASy TrEMBL
Match: A0A0A0LE03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776310 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.9e-27
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NLSSANPSNSSN 73
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

[Close]

BLAST of Chy4G086590 vs. ExPASy TrEMBL
Match: A0A6J1J6J7 (protein LITTLE ZIPPER 4 OS=Cucurbita maxima OX=3661 GN=LOC111481803 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.7e-26
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKG+SKAN+SKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60

Query: 61 NLSSANPSNSSN 73
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

[Close]

BLAST of Chy4G086590 vs. ExPASy TrEMBL
Match: A0A6J1F606 (protein LITTLE ZIPPER 4 OS=Cucurbita moschata OX=3662 GN=LOC111442436 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.7e-26
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKG+SKAN+SKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60

Query: 61 NLSSANPSNSSN 73
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

[Close]

BLAST of Chy4G086590 vs. ExPASy TrEMBL
Match: A0A6J1CT31 (protein LITTLE ZIPPER 4 OS=Momordica charantia OX=3673 GN=LOC111014328 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.7e-22
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANA-SKSIPD 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG+SK NA SKSIPD
Sbjct: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGSSKGNASSKSIPD 60

Query: 61 LNLSSA---NPSNSSN 73
          LNLSSA   NPSNS+N
Sbjct: 61 LNLSSASVTNPSNSTN 76

[Close]

BLAST of Chy4G086590 vs. NCBI nr
Match: XP_008442826.1 (PREDICTED: protein LITTLE ZIPPER 4 [Cucumis melo] >XP_008442827.1 PREDICTED: protein LITTLE ZIPPER 4 [Cucumis melo] >XP_011652008.1 protein LITTLE ZIPPER 4 [Cucumis sativus] >XP_038905261.1 protein LITTLE ZIPPER 4 [Benincasa hispida] >XP_038905262.1 protein LITTLE ZIPPER 4 [Benincasa hispida] >XP_038905263.1 protein LITTLE ZIPPER 4 [Benincasa hispida] >KGN59119.1 hypothetical protein Csa_001986 [Cucumis sativus])

HSP 1 Score: 129 bits (325), Expect = 1.70e-37
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NLSSANPSNSSN 72
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

[Close]

BLAST of Chy4G086590 vs. NCBI nr
Match: XP_022935644.1 (protein LITTLE ZIPPER 4 [Cucurbita moschata] >XP_022983169.1 protein LITTLE ZIPPER 4 [Cucurbita maxima] >XP_023526116.1 protein LITTLE ZIPPER 4 [Cucurbita pepo subsp. pepo] >KAG7017444.1 Protein LITTLE ZIPPER 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126 bits (317), Expect = 2.82e-36
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKG+SKAN+SKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60

Query: 61 NLSSANPSNSSN 72
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

[Close]

BLAST of Chy4G086590 vs. NCBI nr
Match: XP_022144704.1 (protein LITTLE ZIPPER 4 [Momordica charantia])

HSP 1 Score: 113 bits (282), Expect = 6.91e-31
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANAS-KSIPD 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG+SK NAS KSIPD
Sbjct: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGSSKGNASSKSIPD 60

Query: 61 LNLSSA---NPSNSSN 72
          LNLSSA   NPSNS+N
Sbjct: 61 LNLSSASVTNPSNSTN 76

[Close]

BLAST of Chy4G086590 vs. NCBI nr
Match: KAF3441681.1 (hypothetical protein FNV43_RR15596 [Rhamnella rubrinervis])

HSP 1 Score: 112 bits (280), Expect = 1.36e-30
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKL+K NSK+NA+KSIPDL
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLTKTNSKSNATKSIPDL 60

Query: 61 NLSSA---NPSNSSN 72
          NLSS    NPS SSN
Sbjct: 61 NLSSTSNQNPSGSSN 75

[Close]

BLAST of Chy4G086590 vs. NCBI nr
Match: XP_021639017.1 (protein LITTLE ZIPPER 4 isoform X2 [Hevea brasiliensis] >XP_021639018.1 protein LITTLE ZIPPER 4 isoform X2 [Hevea brasiliensis] >XP_021639020.1 protein LITTLE ZIPPER 4 isoform X2 [Hevea brasiliensis])

HSP 1 Score: 112 bits (280), Expect = 1.40e-30
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSK NSKANA  SIPDL
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKANSKANAPNSIPDL 60

Query: 61 NLSSA---NPSNSS 71
          NLSS+   NP+NSS
Sbjct: 61 NLSSSSSHNPTNSS 74

[Close]

BLAST of Chy4G086590 vs. TAIR 10
Match: AT3G52770.1 (protein binding )

HSP 1 Score: 73.6 bits (179), Expect = 7.6e-14
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+L+++NCYIMKENERLRKKA+LLNQENQ LL +LKQKLSK  +  N S +  D 
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSNNGSNN--DN 60

Query: 61 NLSSAN 67
            SSA+
Sbjct: 61 KSSSAS 64

[Close]

BLAST of Chy4G086590 vs. TAIR 10
Match: AT2G45450.1 (protein binding )

HSP 1 Score: 42.7 bits (99), Expect = 1.4e-04
Identity = 23/43 (53.49%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 1   MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQK 44
           ME +N +LY++N  I++ENE+L+KKA LL+QEN+ L S L+ K
Sbjct: 87  MEMINLKLYVENQNIIRENEKLKKKALLLHQENKTLFSLLQTK 129

The following BLAST results are available for this feature:

BLAST of Chy4G086590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56WL5	7.4e-14	66.20	Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana OX=3702 GN=ZPR4 PE=1 SV=1	[more]
Q9LXI8	1.1e-12	66.67	Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana OX=3702 GN=ZPR3 PE=1 SV=1	[more]

BLAST of Chy4G086590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B7E3	7.9e-27	100.00	protein LITTLE ZIPPER 4 OS=Cucumis melo OX=3656 GN=LOC103486597 PE=4 SV=1	[more]
A0A0A0LE03	7.9e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776310 PE=4 SV=1	[more]
A0A6J1J6J7	6.7e-26	97.22	protein LITTLE ZIPPER 4 OS=Cucurbita maxima OX=3661 GN=LOC111481803 PE=4 SV=1	[more]
A0A6J1F606	6.7e-26	97.22	protein LITTLE ZIPPER 4 OS=Cucurbita moschata OX=3662 GN=LOC111442436 PE=4 SV=1	[more]
A0A6J1CT31	7.7e-22	88.16	protein LITTLE ZIPPER 4 OS=Momordica charantia OX=3673 GN=LOC111014328 PE=4 SV=1	[more]

BLAST of Chy4G086590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442826.1	1.70e-37	100.00	PREDICTED: protein LITTLE ZIPPER 4 [Cucumis melo] >XP_008442827.1 PREDICTED: pro...	[more]
XP_022935644.1	2.82e-36	97.22	protein LITTLE ZIPPER 4 [Cucurbita moschata] >XP_022983169.1 protein LITTLE ZIPP...	[more]
XP_022144704.1	6.91e-31	88.16	protein LITTLE ZIPPER 4 [Momordica charantia]	[more]
KAF3441681.1	1.36e-30	86.67	hypothetical protein FNV43_RR15596 [Rhamnella rubrinervis]	[more]
XP_021639017.1	1.40e-30	87.84	protein LITTLE ZIPPER 4 isoform X2 [Hevea brasiliensis] >XP_021639018.1 protein ...	[more]

BLAST of Chy4G086590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52770.1	7.6e-14	66.67	protein binding	[more]
AT2G45450.1	1.4e-04	53.49	protein binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..72
None	No IPR available	PANTHER	PTHR33601:SF1	PROTEIN LITTLE ZIPPER 4	coord: 1..71
IPR039312	Protein LITTLE ZIPPER	PANTHER	PTHR33601	PROTEIN LITTLE ZIPPER 4	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G086590.1	Chy4G086590.1	mRNA