Chy4G086050 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G086050
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Ubiquitin-conjugating enzyme E2 variant 1D
Location	chrH04: 24966969 .. 24968676 (-)
RNA-Seq Expression	Chy4G086050
Synteny	Chy4G086050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGGCATATGGTTGGATGAGGGCTATCAAATGGGTATAACTTTGATGAAGGTCAATGTGTGTTCCAAGGCGGCAAGTAATATTAACTCTTATGTGCTGGTCTCTGGATGAGTCATTGGAAATATGGAATGGTTGATGGGTATCAGAATGATTGGGAGATTAGTTCATAGGAGGTGGTTATAAAAATAAATGGAGCAGAAGTAGGATGGGGAGGGCTGATAATGAGAACTTGGAGTAGCTTGGGAATTGGGAGAGAAAGGGGAGAACTCTCAAATTTCATCCTTCTGTTTTCTATCTTTTTTTCATTTTAGTTCAAATAACAATTTGGTTAGTAGATGTGATTGCATATGAAACTTTGATCCCGGAGATGTCTTTTAGACCCTAACGAACATAGGAGAAATGTCTGAAGGGGGATTATTGAATATTTTAGTACAATTATCAATATATACATACTTCTCTCTGAACAAAATTAGTTGGCATCGAGTGATTTAAACCAGTCGGTTGGGTCCACTCTTTTTCTGTGTTGCTCTTTGAGAGGGCAAATCGATTAAATAATTTGTACATTGCAGATTGTGGAGTTGAATATGACGTTGATGTCTCACCAATGGCAGAACTTAAGCATCTTCTAAGTGTTTGCTTTCCATCACAGTTCCTAGGAACTTCAGGTTGCTGGAGGAACTTGAACGTGGAGAAAAGGGCATTGGCGATGGTACTGTAAGCTATGGAATGGATGATGGAGATGATATTTATATGCGATCGTGGACTGGCACCATTATTGGTCCACACAATGTAATGGCTTTTGCCCTTCTTTTCAGGACTTTTTCTTAATGGTTTGGTCGTGAAAACAATTTGAAAATTTAGAATTCATTCTTACCAAAAGAGAAAAAAAAACTTATAATTCATTGACAATCATTGTTAACCACATTTACTACTCCTGCTCTTTACCAATGTAATTGGCATAACACGTCTTTCTTCTTGAAGTTTGGAGTTCTCTTATTTTAAAAGCTTTGTATGAACAACCTGAGGAGGCAGATTCTATAAATGGTTGAACAATAAGTAATGTGAGGTGTCCTGAGCAGAAAATTGGCAGCCTACCTTATTTTACAATTCCCACTATATGGTGACACATACAAGGGATTAAAATTTAATTCTTTTCTCCTTGCAGACGGTACATGAAGGTAGAATTTATCAGTTGAAGCTGTTCTGTGATAAAGATTACCCTGAGAAGCCACCAAGTGTTCGATTTCATTCAAGAGTGAACATGACATGCGTAAACCATGAAACTGGAGTGGTATCTCTGATTCCATTTACATAGTTGCCAATATGAATCTCTCAGTACTTTTAATTAAACTAAAAATGGATATTTGAAAGAAAGAACAAAAGATAAGTGTAGTATAAATATATAATCGTATATAAAACTTATGTTTTTCTGAATTTTTGCTCCAATAGCAGCAAGTTCACCAACATGTTGTCACCTGCATAAGTAGAAATGATCAAATATTAGCTGATAGTGACCTTTTCCGAGCTGATTATATTTTGTAACATAATGATAAATTTCCAACAGGTTGAGTCAAAGAAATTTGGACTTCTTGCAAATTGGCAGCGAGAATACACAATGGAGGATATACTCACACAGCTGAAAAAGGAAATGGCAGCTCCACATAACCGAAAGCTGGTCCAACCTCCCGAGGGCACCTACTTCTAG

mRNA sequence

ATGCCAGGCATATGGTTGGATGAGGGCTATCAAATGGGTATAACTTTGATGAAGGTCAATGTGTGTTCCAAGGCGGCAATTCCTAGGAACTTCAGGTTGCTGGAGGAACTTGAACGTGGAGAAAAGGGCATTGGCGATGGTACTGTAAGCTATGGAATGGATGATGGAGATGATATTTATATGCGATCGTGGACTGGCACCATTATTGGTCCACACAATACGGTACATGAAGGTAGAATTTATCAGTTGAAGCTGTTCTGTGATAAAGATTACCCTGAGAAGCCACCAAGTGTTCGATTTCATTCAAGAGTGAACATGACATGCGTAAACCATGAAACTGGAGTGGTTGAGTCAAAGAAATTTGGACTTCTTGCAAATTGGCAGCGAGAATACACAATGGAGGATATACTCACACAGCTGAAAAAGGAAATGGCAGCTCCACATAACCGAAAGCTGGTCCAACCTCCCGAGGGCACCTACTTCTAG

Coding sequence (CDS)

ATGCCAGGCATATGGTTGGATGAGGGCTATCAAATGGGTATAACTTTGATGAAGGTCAATGTGTGTTCCAAGGCGGCAATTCCTAGGAACTTCAGGTTGCTGGAGGAACTTGAACGTGGAGAAAAGGGCATTGGCGATGGTACTGTAAGCTATGGAATGGATGATGGAGATGATATTTATATGCGATCGTGGACTGGCACCATTATTGGTCCACACAATACGGTACATGAAGGTAGAATTTATCAGTTGAAGCTGTTCTGTGATAAAGATTACCCTGAGAAGCCACCAAGTGTTCGATTTCATTCAAGAGTGAACATGACATGCGTAAACCATGAAACTGGAGTGGTTGAGTCAAAGAAATTTGGACTTCTTGCAAATTGGCAGCGAGAATACACAATGGAGGATATACTCACACAGCTGAAAAAGGAAATGGCAGCTCCACATAACCGAAAGCTGGTCCAACCTCCCGAGGGCACCTACTTCTAG

Protein sequence

MPGIWLDEGYQMGITLMKVNVCSKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF*

Homology

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BLAST of Chy4G086050 vs. ExPASy Swiss-Prot
Match: Q9SJ44 (Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana OX=3702 GN=UEV1C PE=1 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 6.8e-76
Identity = 127/139 (91.37%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 82
           S   +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ
Sbjct: 7   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 66

Query: 83  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 142
           LKLFCDKDYPEKPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+YTMEDILTQLKK
Sbjct: 67  LKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKK 126

Query: 143 EMAAPHNRKLVQPPEGTYF 162
           EMAA HNRKLVQPPEGT+F
Sbjct: 127 EMAASHNRKLVQPPEGTFF 145

[Close]

BLAST of Chy4G086050 vs. ExPASy Swiss-Prot
Match: Q9SVD7 (Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana OX=3702 GN=UEV1D PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 6.3e-74
Identity = 126/139 (90.65%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 82
           S   +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ
Sbjct: 8   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67

Query: 83  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 142
           LKLFCDKDYPEKPP+VRFHSRVNM CVNHETGVV+ KKFGLLANWQREYTMEDIL QLKK
Sbjct: 68  LKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDILVQLKK 127

Query: 143 EMAAPHNRKLVQPPEGTYF 162
           EM+  HNRKLVQPPEGT F
Sbjct: 128 EMSTSHNRKLVQPPEGTCF 146

[Close]

BLAST of Chy4G086050 vs. ExPASy Swiss-Prot
Match: Q93YP0 (Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UEV1A PE=1 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.2e-59
Identity = 102/136 (75.00%), Postives = 116/136 (85.29%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 82
           +K  +PRNFRLLEELERGEKGIGDGTVSYGMDD DDIYM+SWTGTI+GP NT +EG+I+Q
Sbjct: 6   AKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQ 65

Query: 83  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 142
           LKLFC K+YPE PP+VRF +R+NM CVN ETGVVE   F +L NW+REYTMEDIL +LKK
Sbjct: 66  LKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMEDILVKLKK 125

Query: 143 EMAAPHNRKLVQPPEG 159
           EM   HNRKL QPPEG
Sbjct: 126 EMMTSHNRKLAQPPEG 141

[Close]

BLAST of Chy4G086050 vs. ExPASy Swiss-Prot
Match: Q9CAB6 (Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana OX=3702 GN=UEV1B PE=1 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.4e-57
Identity = 99/135 (73.33%), Postives = 114/135 (84.44%), Query Frame = 0


Query: 24  KAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 83
           K  +PRNFRLLEELERGEKGIGDGTVSYGMDD DDI M+SWTGTI+GPHNT +EG+I+QL
Sbjct: 7   KVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYEGKIFQL 66

Query: 84  KLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKE 143
           KLFC KDYPE PP+VRF SR+NM CVN E GVV+   F +L+NW+RE+TMED+L QLKKE
Sbjct: 67  KLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLLIQLKKE 126

Query: 144 MAAPHNRKLVQPPEG 159
           M +  NRKL QP EG
Sbjct: 127 MMSSQNRKLAQPLEG 141

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BLAST of Chy4G086050 vs. ExPASy Swiss-Prot
Match: Q54D06 (Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum OX=44689 GN=ube2v PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-44
Identity = 77/135 (57.04%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 27  IPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLF 86
           IPRNF LLEELE GEK  GDGT+SYG++  DDI + SW GTIIGP NT  + R Y LKL+
Sbjct: 4   IPRNFVLLEELESGEKSTGDGTISYGLESPDDILLSSWIGTIIGPQNTPFDNRFYSLKLY 63

Query: 87  CDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAA 146
           CDKDYP KPP+VRF +++N+ CVN + GVV+ K   +L+NW  +  +++IL++L++EM++
Sbjct: 64  CDKDYPNKPPTVRFTTKINIGCVNQQNGVVDPKNLPILSNWTSKNRIQNILSELRREMSS 123

Query: 147 PHNRKLVQPPEGTYF 162
             N+KLVQPPEG  F
Sbjct: 124 SSNKKLVQPPEGANF 138

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BLAST of Chy4G086050 vs. ExPASy TrEMBL
Match: A0A0A0LE42 (UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G778350 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 135/139 (97.12%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 82
           S   +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ
Sbjct: 8   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67

Query: 83  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 142
           LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK
Sbjct: 68  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 127

Query: 143 EMAAPHNRKLVQPPEGTYF 162
           EMAAPHNRKLVQPPEGTYF
Sbjct: 128 EMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Chy4G086050 vs. ExPASy TrEMBL
Match: A0A1S3B6A6 (ubiquitin-conjugating enzyme E2 variant 1C OS=Cucumis melo OX=3656 GN=LOC103486656 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 135/139 (97.12%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 82
           S   +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ
Sbjct: 8   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67

Query: 83  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 142
           LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK
Sbjct: 68  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 127

Query: 143 EMAAPHNRKLVQPPEGTYF 162
           EMAAPHNRKLVQPPEGTYF
Sbjct: 128 EMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Chy4G086050 vs. ExPASy TrEMBL
Match: A0A6P6AQA1 (ubiquitin-conjugating enzyme E2 variant 1C OS=Durio zibethinus OX=66656 GN=LOC111311670 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.9e-76
Identity = 134/139 (96.40%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 82
           S   +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ
Sbjct: 8   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67

Query: 83  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 142
           LKLFCDKDYPEKPPSVRFHSR+NMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK
Sbjct: 68  LKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 127

Query: 143 EMAAPHNRKLVQPPEGTYF 162
           EMAAPHNRKLVQPPEGTYF
Sbjct: 128 EMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Chy4G086050 vs. ExPASy TrEMBL
Match: A0A6J1CTV6 (ubiquitin-conjugating enzyme E2 variant 1C OS=Momordica charantia OX=3673 GN=LOC111014288 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.2e-76
Identity = 134/139 (96.40%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 82
           S   +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ
Sbjct: 8   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67

Query: 83  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 142
           LKLFCDKDYP+KPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK
Sbjct: 68  LKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 127

Query: 143 EMAAPHNRKLVQPPEGTYF 162
           EMAAPHNRKLVQPPEGTYF
Sbjct: 128 EMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Chy4G086050 vs. ExPASy TrEMBL
Match: A0A7J6HQG0 (UBC core domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_004917 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.1e-76
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 82
           S   +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ
Sbjct: 8   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67

Query: 83  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 142
           LKLFCDKDYPE+PPSVRFHSR+NMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK
Sbjct: 68  LKLFCDKDYPERPPSVRFHSRINMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 127

Query: 143 EMAAPHNRKLVQPPEGTYF 162
           EMAAPHNRKLVQPPEGTYF
Sbjct: 128 EMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Chy4G086050 vs. NCBI nr
Match: XP_004136503.1 (ubiquitin-conjugating enzyme E2 variant 1C [Cucumis sativus] >XP_008442892.1 PREDICTED: ubiquitin-conjugating enzyme E2 variant 1C [Cucumis melo] >KGN59179.1 hypothetical protein Csa_001903 [Cucumis sativus])

HSP 1 Score: 291 bits (745), Expect = 5.91e-99
Identity = 135/139 (97.12%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 82
           S   +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ
Sbjct: 8   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67

Query: 83  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 142
           LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK
Sbjct: 68  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 127

Query: 143 EMAAPHNRKLVQPPEGTYF 161
           EMAAPHNRKLVQPPEGTYF
Sbjct: 128 EMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Chy4G086050 vs. NCBI nr
Match: XP_021636663.1 (ubiquitin-conjugating enzyme E2 variant 1C isoform X2 [Hevea brasiliensis] >XP_022766996.1 ubiquitin-conjugating enzyme E2 variant 1C [Durio zibethinus])

HSP 1 Score: 291 bits (744), Expect = 8.40e-99
Identity = 134/139 (96.40%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 82
           S   +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ
Sbjct: 8   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67

Query: 83  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 142
           LKLFCDKDYPEKPPSVRFHSR+NMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK
Sbjct: 68  LKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 127

Query: 143 EMAAPHNRKLVQPPEGTYF 161
           EMAAPHNRKLVQPPEGTYF
Sbjct: 128 EMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Chy4G086050 vs. NCBI nr
Match: XP_022144653.1 (ubiquitin-conjugating enzyme E2 variant 1C [Momordica charantia] >XP_038904037.1 ubiquitin-conjugating enzyme E2 variant 1C [Benincasa hispida])

HSP 1 Score: 290 bits (742), Expect = 1.70e-98
Identity = 134/139 (96.40%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 82
           S   +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ
Sbjct: 8   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67

Query: 83  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 142
           LKLFCDKDYP+KPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK
Sbjct: 68  LKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 127

Query: 143 EMAAPHNRKLVQPPEGTYF 161
           EMAAPHNRKLVQPPEGTYF
Sbjct: 128 EMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Chy4G086050 vs. NCBI nr
Match: XP_030543544.1 (ubiquitin-conjugating enzyme E2 variant 1C [Rhodamnia argentea] >XP_030543555.1 ubiquitin-conjugating enzyme E2 variant 1C [Rhodamnia argentea] >XP_030543563.1 ubiquitin-conjugating enzyme E2 variant 1C [Rhodamnia argentea])

HSP 1 Score: 290 bits (742), Expect = 1.70e-98
Identity = 134/139 (96.40%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 82
           S   +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ
Sbjct: 8   SGVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67

Query: 83  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 142
           LKLFCDKDYPEKPPSVRFHSR+NMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK
Sbjct: 68  LKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 127

Query: 143 EMAAPHNRKLVQPPEGTYF 161
           EMAAPHNRKLVQPPEGTYF
Sbjct: 128 EMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Chy4G086050 vs. NCBI nr
Match: XP_030485037.1 (ubiquitin-conjugating enzyme E2 variant 1C [Cannabis sativa] >KAF4396949.1 hypothetical protein F8388_004917 [Cannabis sativa] >KAF4402830.1 hypothetical protein G4B88_010282 [Cannabis sativa])

HSP 1 Score: 290 bits (741), Expect = 2.41e-98
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 82
           S   +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ
Sbjct: 8   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67

Query: 83  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 142
           LKLFCDKDYPE+PPSVRFHSR+NMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK
Sbjct: 68  LKLFCDKDYPERPPSVRFHSRINMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 127

Query: 143 EMAAPHNRKLVQPPEGTYF 161
           EMAAPHNRKLVQPPEGTYF
Sbjct: 128 EMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Chy4G086050 vs. TAIR 10
Match: AT2G36060.1 (MMS ZWEI homologue 3 )

HSP 1 Score: 284.6 bits (727), Expect = 4.8e-77
Identity = 127/139 (91.37%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 82
           S   +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ
Sbjct: 7   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 66

Query: 83  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 142
           LKLFCDKDYPEKPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+YTMEDILTQLKK
Sbjct: 67  LKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKK 126

Query: 143 EMAAPHNRKLVQPPEGTYF 162
           EMAA HNRKLVQPPEGT+F
Sbjct: 127 EMAASHNRKLVQPPEGTFF 145

[Close]

BLAST of Chy4G086050 vs. TAIR 10
Match: AT2G36060.2 (MMS ZWEI homologue 3 )

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-75
Identity = 127/140 (90.71%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN-TVHEGRIY 82
           S   +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN TVHEGRIY
Sbjct: 7   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNVTVHEGRIY 66

Query: 83  QLKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLK 142
           QLKLFCDKDYPEKPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+YTMEDILTQLK
Sbjct: 67  QLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLK 126

Query: 143 KEMAAPHNRKLVQPPEGTYF 162
           KEMAA HNRKLVQPPEGT+F
Sbjct: 127 KEMAASHNRKLVQPPEGTFF 146

[Close]

BLAST of Chy4G086050 vs. TAIR 10
Match: AT2G36060.3 (MMS ZWEI homologue 3 )

HSP 1 Score: 278.1 bits (710), Expect = 4.5e-75
Identity = 126/139 (90.65%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 82
           S   +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ
Sbjct: 7   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 66

Query: 83  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 142
           LKLFCDKDYPEKPP+VRFHSR+NMTCVNH+TG V+SKKFG+LANWQR+YTMEDILTQLKK
Sbjct: 67  LKLFCDKDYPEKPPTVRFHSRINMTCVNHDTG-VDSKKFGVLANWQRQYTMEDILTQLKK 126

Query: 143 EMAAPHNRKLVQPPEGTYF 162
           EMAA HNRKLVQPPEGT+F
Sbjct: 127 EMAASHNRKLVQPPEGTFF 144

[Close]

BLAST of Chy4G086050 vs. TAIR 10
Match: AT3G52560.1 (ubiquitin E2 variant 1D-4 )

HSP 1 Score: 278.1 bits (710), Expect = 4.5e-75
Identity = 126/139 (90.65%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 82
           S   +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ
Sbjct: 8   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67

Query: 83  LKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKK 142
           LKLFCDKDYPEKPP+VRFHSRVNM CVNHETGVV+ KKFGLLANWQREYTMEDIL QLKK
Sbjct: 68  LKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDILVQLKK 127

Query: 143 EMAAPHNRKLVQPPEGTYF 162
           EM+  HNRKLVQPPEGT F
Sbjct: 128 EMSTSHNRKLVQPPEGTCF 146

[Close]

BLAST of Chy4G086050 vs. TAIR 10
Match: AT3G52560.2 (ubiquitin E2 variant 1D-4 )

HSP 1 Score: 273.5 bits (698), Expect = 1.1e-73
Identity = 126/140 (90.00%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 23  SKAAIPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN-TVHEGRIY 82
           S   +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN TVHEGRIY
Sbjct: 8   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNVTVHEGRIY 67

Query: 83  QLKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLK 142
           QLKLFCDKDYPEKPP+VRFHSRVNM CVNHETGVV+ KKFGLLANWQREYTMEDIL QLK
Sbjct: 68  QLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDILVQLK 127

Query: 143 KEMAAPHNRKLVQPPEGTYF 162
           KEM+  HNRKLVQPPEGT F
Sbjct: 128 KEMSTSHNRKLVQPPEGTCF 147

The following BLAST results are available for this feature:

BLAST of Chy4G086050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJ44	6.8e-76	91.37	Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q9SVD7	6.3e-74	90.65	Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q93YP0	1.2e-59	75.00	Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q9CAB6	1.4e-57	73.33	Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q54D06	1.4e-44	57.04	Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum OX=...	[more]

BLAST of Chy4G086050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE42	1.4e-76	97.12	UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G778350 PE...	[more]
A0A1S3B6A6	1.4e-76	97.12	ubiquitin-conjugating enzyme E2 variant 1C OS=Cucumis melo OX=3656 GN=LOC1034866...	[more]
A0A6P6AQA1	1.9e-76	96.40	ubiquitin-conjugating enzyme E2 variant 1C OS=Durio zibethinus OX=66656 GN=LOC11...	[more]
A0A6J1CTV6	3.2e-76	96.40	ubiquitin-conjugating enzyme E2 variant 1C OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A7J6HQG0	4.1e-76	95.68	UBC core domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_004917 PE...	[more]

BLAST of Chy4G086050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136503.1	5.91e-99	97.12	ubiquitin-conjugating enzyme E2 variant 1C [Cucumis sativus] >XP_008442892.1 PRE...	[more]
XP_021636663.1	8.40e-99	96.40	ubiquitin-conjugating enzyme E2 variant 1C isoform X2 [Hevea brasiliensis] >XP_0...	[more]
XP_022144653.1	1.70e-98	96.40	ubiquitin-conjugating enzyme E2 variant 1C [Momordica charantia] >XP_038904037.1...	[more]
XP_030543544.1	1.70e-98	96.40	ubiquitin-conjugating enzyme E2 variant 1C [Rhodamnia argentea] >XP_030543555.1 ...	[more]
XP_030485037.1	2.41e-98	95.68	ubiquitin-conjugating enzyme E2 variant 1C [Cannabis sativa] >KAF4396949.1 hypot...	[more]

BLAST of Chy4G086050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36060.1	4.8e-77	91.37	MMS ZWEI homologue 3	[more]
AT2G36060.2	1.2e-75	90.71	MMS ZWEI homologue 3	[more]
AT2G36060.3	4.5e-75	90.65	MMS ZWEI homologue 3	[more]
AT3G52560.1	4.5e-75	90.65	ubiquitin E2 variant 1D-4	[more]
AT3G52560.2	1.1e-73	90.00	ubiquitin E2 variant 1D-4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00212	ubc_7	coord: 31..159 e-value: 1.1E-4 score: 29.9
None	No IPR available	PANTHER	PTHR24068:SF318	UBIQUITIN-CONJUGATING ENZYME/RWD-LIKE PROTEIN-RELATED	coord: 24..155
None	No IPR available	PANTHER	PTHR24068	UBIQUITIN-CONJUGATING ENZYME E2	coord: 24..155
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 58..151 e-value: 3.2E-14 score: 52.8
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBC_2	coord: 28..161 score: 31.965687
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10	Ubiquitin Conjugating Enzyme	coord: 14..161 e-value: 1.0E-42 score: 147.1
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 27..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G086050.1	Chy4G086050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006301	postreplication repair
biological_process	GO:0070534	protein K63-linked ubiquitination
cellular_component	GO:0005634	nucleus