Chy4G084130 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G084130
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	40S ribosomal protein s2
Location	chrH04: 23373503 .. 23375062 (-)
RNA-Seq Expression	Chy4G084130
Synteny	Chy4G084130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATTATGCCAGTCCAGAAGCAGACTCGTGCCGGACAGAGGACCCGTTTCAAGGCGTTCGTCGTCGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTTAAGTGTAGTAAAGAAGTTGCAACAGCGATTCGTGGTTCGATTATTTTGGCTAAGTTGTCTGTGATTCCCGTGAGAAGAGGGTATTGGGGTAACAAGATTGGTAAGCCCCATACGGTGCCGTGTAAAGTTACTGGAAAATGTGGGTCCGTTACCGTCCGGATGGTTCCGGCGCCGCGAGGTGCTGGGATTGTGGCGGCTAGAGTGCCCAAGAAGGTCTTGCAGTTCGCGGGGATTGAGGATGTGTTTACATCTTCTAGAGGATCGACCAAAACTCTCGGAAACTTTGTTAAGGTTTGACATAACTTTAATGATTACTCTGTTCTCTTTAGTTTATATTTTTGCTTTGTTCTACTAATAGTATATTGGTTTCACTTTATCATTATGAATGGTATCAATTAGTTAATCACTAAATCTTTCTTAGCCTGTTCGTTTTGAAAGCTTGATCAGGATGGAATTGAGCCTTAGTGTAATTTTAAGTATTTGATTTGTTTTCAGTTCAGATAGTCTAATTTAATTCTGTAACATGTTTTCGAGTAGTTTTCACTGATTCAGAAGCATGCTAATTGAAGGAGTGGACCAAGTTTTGATGTAGCGTGTGCTGTTTTCTACCTCAAAAGTTGTCCAACATCACTGAAATGTTTCTATGGACTTGCATTATTATGCTATGTTGCATTCATTGTTACATTGTGTACAGCTCAAATATCCTGCTTTAAGATGATTAAAATTTATTGTCGGGAGAGTATAGATCAAAACAAAATTTAGAAGAAAAATGAGGTAGGGGCTTTATTATTTTTGGTCAAATTGCTAATATGTTCCTTATGGGTGGAAGAAAGTTAGAATTTCACCTATGATCTTAAAAGTTAGAATTTGGTCCCTTTGGTTCGATGAACCTTCATAGTTAGTCCTTATAGTTTGATAAATGGTCCCTATTGTAGGGACTGTGAATGAAGTTGGGGACTATTTTATCCTTAATCATTTGATGTTGGATTTCGAATTAGATGGGTTGTTAGATTTCAATTCCAGAAAGGGTCATTTGAAACCTTTTATAAAGTAACGTTGTCTGGCTGCATGTTGTTGCTCTTTAATTATCAACTATCACACCATGTTGTGCCATTGTTGGTTGCTCACAACAGTGAAGTTCTGTTCCAACTAAGAAAATCCTCCTTGATTTTGTGGCGTCAACTCATATTGATCTGTGGCTATTTTCTTGTTGTTAATAAGAGCTTTTTTTGTTTATCAAGTCGTATTTGATATCATGTGGGTCTAACTTCTTCCTCTTTATTGCCATTTCAGGCAACATTTGACTGTCTTCTGAAAACATACGGCTTCTTAACACCTGAATTTTGGAGGGAGACACGCTTCACAAAATCCCCATTCCAAGAACACACAGATTTGTTGGCGAAACCCACAGTGAAGGCATTGTTGTTGGAAGATCCTGACAGGGTTACTGCTTGA

mRNA sequence

ATGAAGATTATGCCAGTCCAGAAGCAGACTCGTGCCGGACAGAGGACCCGTTTCAAGGCGTTCGTCGTCGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTTAAGTGTAGTAAAGAAGTTGCAACAGCGATTCGTGGTTCGATTATTTTGGCTAAGTTGTCTGTGATTCCCGTGAGAAGAGGGTATTGGGGTAACAAGATTGGTAAGCCCCATACGGTGCCGTGTAAAGTTACTGGAAAATGTGGGTCCGTTACCGTCCGGATGGTTCCGGCGCCGCGAGGTGCTGGGATTGTGGCGGCTAGAGTGCCCAAGAAGGTCTTGCAGTTCGCGGGGATTGAGGATGTGTTTACATCTTCTAGAGGATCGACCAAAACTCTCGGAAACTTTGTTAAGGCAACATTTGACTGTCTTCTGAAAACATACGGCTTCTTAACACCTGAATTTTGGAGGGAGACACGCTTCACAAAATCCCCATTCCAAGAACACACAGATTTGTTGGCGAAACCCACAGTGAAGGCATTGTTGTTGGAAGATCCTGACAGGGTTACTGCTTGA

Coding sequence (CDS)

ATGAAGATTATGCCAGTCCAGAAGCAGACTCGTGCCGGACAGAGGACCCGTTTCAAGGCGTTCGTCGTCGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTTAAGTGTAGTAAAGAAGTTGCAACAGCGATTCGTGGTTCGATTATTTTGGCTAAGTTGTCTGTGATTCCCGTGAGAAGAGGGTATTGGGGTAACAAGATTGGTAAGCCCCATACGGTGCCGTGTAAAGTTACTGGAAAATGTGGGTCCGTTACCGTCCGGATGGTTCCGGCGCCGCGAGGTGCTGGGATTGTGGCGGCTAGAGTGCCCAAGAAGGTCTTGCAGTTCGCGGGGATTGAGGATGTGTTTACATCTTCTAGAGGATCGACCAAAACTCTCGGAAACTTTGTTAAGGCAACATTTGACTGTCTTCTGAAAACATACGGCTTCTTAACACCTGAATTTTGGAGGGAGACACGCTTCACAAAATCCCCATTCCAAGAACACACAGATTTGTTGGCGAAACCCACAGTGAAGGCATTGTTGTTGGAAGATCCTGACAGGGTTACTGCTTGA

Protein sequence

MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDPDRVTA*

Homology

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BLAST of Chy4G084130 vs. ExPASy Swiss-Prot
Match: P49688 (40S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2)

HSP 1 Score: 333.2 bits (853), Expect = 1.9e-90
Identity = 164/183 (89.62%), Postives = 172/183 (93.99%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVR
Sbjct: 101 MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVR 160

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 161 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 220

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 180
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF++SP+QEHTD LA    KAL    P
Sbjct: 221 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLAS---KALSTSKP 280

Query: 181 DRV 184
           D V
Sbjct: 281 DPV 280

[Close]

BLAST of Chy4G084130 vs. ExPASy Swiss-Prot
Match: Q8L8Y0 (40S ribosomal protein S2-1 OS=Arabidopsis thaliana OX=3702 GN=RPS2A PE=2 SV=2)

HSP 1 Score: 330.1 bits (845), Expect = 1.6e-89
Identity = 159/174 (91.38%), Postives = 168/174 (96.55%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVR
Sbjct: 100 MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVR 159

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 160 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 219

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKA 175
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF++SP+QEHTD L+   V A
Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Chy4G084130 vs. ExPASy Swiss-Prot
Match: Q93VB8 (40S ribosomal protein S2-2 OS=Arabidopsis thaliana OX=3702 GN=RPS2B PE=2 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 1.6e-89
Identity = 159/174 (91.38%), Postives = 168/174 (96.55%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVR
Sbjct: 100 MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVR 159

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 160 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 219

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKA 175
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF++SP+QEHTD L+   V A
Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Chy4G084130 vs. ExPASy Swiss-Prot
Match: Q9SCM3 (40S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.4e-88
Identity = 159/174 (91.38%), Postives = 168/174 (96.55%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAF+VVGD NGHVGLGVKCSKEVATAIRG+IILAKLSV+P+R
Sbjct: 92  MKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIR 151

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 152 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 211

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTD-LLAKPTVK 174
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF+KSP+QEHTD LL  P VK
Sbjct: 212 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSKSPYQEHTDFLLIPPGVK 265

[Close]

BLAST of Chy4G084130 vs. ExPASy Swiss-Prot
Match: Q90YS3 (40S ribosomal protein S2 OS=Ictalurus punctatus OX=7998 GN=rps2 PE=2 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.7e-75
Identity = 134/169 (79.29%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           +KIMPVQKQTRAGQRTRFKAFV +GD NGHVGLGVKCSKEVATAIRG+IILAKLS+IPVR
Sbjct: 92  LKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVR 151

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGI+D +TS+
Sbjct: 152 RGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSA 211

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAK 170
           RG T TLGNF KATFD + KTY +LTP+ W+ET FTKSP+QE TD LAK
Sbjct: 212 RGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLAK 260

[Close]

BLAST of Chy4G084130 vs. ExPASy TrEMBL
Match: A0A5D3DPL0 (40S ribosomal protein S2-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006280 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.8e-100
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 85  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 144

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 145 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 204

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 180
           RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP
Sbjct: 205 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 264

Query: 181 DRVTA 186
           DRVTA
Sbjct: 265 DRVTA 269

[Close]

BLAST of Chy4G084130 vs. ExPASy TrEMBL
Match: E5GBY7 (40S ribosomal protein s2 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.8e-100
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 85  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 144

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 145 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 204

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 180
           RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP
Sbjct: 205 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 264

Query: 181 DRVTA 186
           DRVTA
Sbjct: 265 DRVTA 269

[Close]

BLAST of Chy4G084130 vs. ExPASy TrEMBL
Match: A0A1S3B7F9 (40S ribosomal protein S2-3-like OS=Cucumis melo OX=3656 GN=LOC103486852 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.8e-100
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 85  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 144

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 145 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 204

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 180
           RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP
Sbjct: 205 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 264

Query: 181 DRVTA 186
           DRVTA
Sbjct: 265 DRVTA 269

[Close]

BLAST of Chy4G084130 vs. ExPASy TrEMBL
Match: A0A0A0LFC7 (S5 DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G816100 PE=3 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 6.1e-100
Identity = 184/185 (99.46%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 85  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 144

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 145 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 204

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 180
           RGSTKTLGNFVKATFDCLL+TYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP
Sbjct: 205 RGSTKTLGNFVKATFDCLLRTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 264

Query: 181 DRVTA 186
           DRVTA
Sbjct: 265 DRVTA 269

[Close]

BLAST of Chy4G084130 vs. ExPASy TrEMBL
Match: A0A6J1F4N7 (40S ribosomal protein S2-4-like OS=Cucurbita moschata OX=3662 GN=LOC111442079 PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.2e-99
Identity = 182/185 (98.38%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 85  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 144

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTV+MVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 145 RGYWGNKIGKPHTVPCKVTGKCGSVTVQMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 204

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 180
           RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP
Sbjct: 205 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 264

Query: 181 DRVTA 186
           D+V+A
Sbjct: 265 DKVSA 269

[Close]

BLAST of Chy4G084130 vs. NCBI nr
Match: XP_008443195.1 (PREDICTED: 40S ribosomal protein S2-3-like [Cucumis melo] >ADN33986.1 40S ribosomal protein s2 [Cucumis melo subsp. melo] >KAA0053922.1 40S ribosomal protein S2-3-like [Cucumis melo var. makuwa] >TYK25482.1 40S ribosomal protein S2-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 372 bits (954), Expect = 1.61e-128
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 85  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 144

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 145 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 204

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 180
           RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP
Sbjct: 205 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 264

Query: 181 DRVTA 185
           DRVTA
Sbjct: 265 DRVTA 269

[Close]

BLAST of Chy4G084130 vs. NCBI nr
Match: XP_038906344.1 (40S ribosomal protein S2-4-like [Benincasa hispida])

HSP 1 Score: 372 bits (954), Expect = 1.61e-128
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 85  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 144

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 145 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 204

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 180
           RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP
Sbjct: 205 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 264

Query: 181 DRVTA 185
           DRVTA
Sbjct: 265 DRVTA 269

[Close]

BLAST of Chy4G084130 vs. NCBI nr
Match: XP_011652156.1 (40S ribosomal protein S2-4 [Cucumis sativus])

HSP 1 Score: 370 bits (951), Expect = 4.61e-128
Identity = 184/185 (99.46%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 85  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 144

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 145 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 204

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 180
           RGSTKTLGNFVKATFDCLL+TYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP
Sbjct: 205 RGSTKTLGNFVKATFDCLLRTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 264

Query: 181 DRVTA 185
           DRVTA
Sbjct: 265 DRVTA 269

[Close]

BLAST of Chy4G084130 vs. NCBI nr
Match: XP_023522607.1 (40S ribosomal protein S2-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 368 bits (945), Expect = 3.78e-127
Identity = 183/185 (98.92%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 85  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 144

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 145 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 204

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 180
           RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP
Sbjct: 205 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 264

Query: 181 DRVTA 185
           D+V A
Sbjct: 265 DKVPA 269

[Close]

BLAST of Chy4G084130 vs. NCBI nr
Match: XP_022935112.1 (40S ribosomal protein S2-4-like [Cucurbita moschata])

HSP 1 Score: 367 bits (943), Expect = 7.63e-127
Identity = 182/185 (98.38%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 85  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 144

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTV+MVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 145 RGYWGNKIGKPHTVPCKVTGKCGSVTVQMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 204

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 180
           RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP
Sbjct: 205 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 264

Query: 181 DRVTA 185
           D+V+A
Sbjct: 265 DKVSA 269

[Close]

BLAST of Chy4G084130 vs. TAIR 10
Match: AT2G41840.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 333.2 bits (853), Expect = 1.4e-91
Identity = 164/183 (89.62%), Postives = 172/183 (93.99%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVR
Sbjct: 101 MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVR 160

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 161 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 220

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 180
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF++SP+QEHTD LA    KAL    P
Sbjct: 221 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLAS---KALSTSKP 280

Query: 181 DRV 184
           D V
Sbjct: 281 DPV 280

[Close]

BLAST of Chy4G084130 vs. TAIR 10
Match: AT1G58983.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-90
Identity = 159/174 (91.38%), Postives = 168/174 (96.55%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVR
Sbjct: 100 MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVR 159

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 160 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 219

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKA 175
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF++SP+QEHTD L+   V A
Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Chy4G084130 vs. TAIR 10
Match: AT1G59359.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-90
Identity = 159/174 (91.38%), Postives = 168/174 (96.55%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVR
Sbjct: 100 MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVR 159

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 160 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 219

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKA 175
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF++SP+QEHTD L+   V A
Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Chy4G084130 vs. TAIR 10
Match: AT1G58380.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-90
Identity = 159/174 (91.38%), Postives = 168/174 (96.55%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVR
Sbjct: 100 MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVR 159

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 160 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 219

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKA 175
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF++SP+QEHTD L+   V A
Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Chy4G084130 vs. TAIR 10
Match: AT1G58684.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-90
Identity = 159/174 (91.38%), Postives = 168/174 (96.55%), Query Frame = 0


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVR
Sbjct: 100 MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVR 159

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 160 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 219

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKA 175
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF++SP+QEHTD L+   V A
Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

The following BLAST results are available for this feature:

BLAST of Chy4G084130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49688	1.9e-90	89.62	40S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2	[more]
Q8L8Y0	1.6e-89	91.38	40S ribosomal protein S2-1 OS=Arabidopsis thaliana OX=3702 GN=RPS2A PE=2 SV=2	[more]
Q93VB8	1.6e-89	91.38	40S ribosomal protein S2-2 OS=Arabidopsis thaliana OX=3702 GN=RPS2B PE=2 SV=1	[more]
Q9SCM3	1.4e-88	91.38	40S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1	[more]
Q90YS3	1.7e-75	79.29	40S ribosomal protein S2 OS=Ictalurus punctatus OX=7998 GN=rps2 PE=2 SV=1	[more]

BLAST of Chy4G084130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPL0	2.8e-100	100.00	40S ribosomal protein S2-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
E5GBY7	2.8e-100	100.00	40S ribosomal protein s2 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1S3B7F9	2.8e-100	100.00	40S ribosomal protein S2-3-like OS=Cucumis melo OX=3656 GN=LOC103486852 PE=3 SV=...	[more]
A0A0A0LFC7	6.1e-100	99.46	S5 DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G816100 PE=...	[more]
A0A6J1F4N7	5.2e-99	98.38	40S ribosomal protein S2-4-like OS=Cucurbita moschata OX=3662 GN=LOC111442079 PE...	[more]

BLAST of Chy4G084130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443195.1	1.61e-128	100.00	PREDICTED: 40S ribosomal protein S2-3-like [Cucumis melo] >ADN33986.1 40S riboso...	[more]
XP_038906344.1	1.61e-128	100.00	40S ribosomal protein S2-4-like [Benincasa hispida]	[more]
XP_011652156.1	4.61e-128	99.46	40S ribosomal protein S2-4 [Cucumis sativus]	[more]
XP_023522607.1	3.78e-127	98.92	40S ribosomal protein S2-4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022935112.1	7.63e-127	98.38	40S ribosomal protein S2-4-like [Cucurbita moschata]	[more]

BLAST of Chy4G084130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41840.1	1.4e-91	89.62	Ribosomal protein S5 family protein	[more]
AT1G58983.1	1.1e-90	91.38	Ribosomal protein S5 family protein	[more]
AT1G59359.1	1.1e-90	91.38	Ribosomal protein S5 family protein	[more]
AT1G58380.1	1.1e-90	91.38	Ribosomal protein S5 family protein	[more]
AT1G58684.1	1.1e-90	91.38	Ribosomal protein S5 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.20		coord: 1..58 e-value: 3.1E-28 score: 100.1
None	No IPR available	PANTHER	PTHR13718:SF102	BNAA03G19630D PROTEIN	coord: 1..174
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 2..61
IPR013810	Ribosomal protein S5, N-terminal	PFAM	PF00333	Ribosomal_S5	coord: 1..60 e-value: 1.3E-27 score: 95.5
IPR013810	Ribosomal protein S5, N-terminal	PROSITE	PS50881	S5_DSRBD	coord: 1..59 score: 21.105621
IPR005711	Ribosomal protein S5, eukaryotic/archaeal	TIGRFAM	TIGR01020	TIGR01020	coord: 1..156 e-value: 9.7E-70 score: 232.2
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 79..145 e-value: 4.1E-24 score: 83.8
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 59..152 e-value: 4.0E-51 score: 173.1
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 1..174
IPR018192	Ribosomal protein S5, N-terminal, conserved site	PROSITE	PS00585	RIBOSOMAL_S5	coord: 13..45
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 72..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G084130.1	Chy4G084130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding