Chy4G083660 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G083660
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH04: 22852535 .. 22852962 (-)
RNA-Seq Expression	Chy4G083660
Synteny	Chy4G083660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGAAAATCTCAAGGTTGCTCTTCCGTGGACATGAGTTAGGTCAAAAACACAATTACTAGACAAAACAAACATTCAAACTTCAGAAATGAAAGCAAAACGGAAAAATTCAAGGCCACAATACAAACCAGAGAGTTAAGAATTGATGAAAATCGAAGAAAACCCGGTCAGCCAATGTGAAAAGCGCCAATATCGCCAGTTCTAATGGAGCTGGCGACTTCGTCGGCAAAGGCCAAACAAGAAGAAATACAGCCGCTAAAGGCACCCCAAACCATATCGGCGATCCAGAACGCCAAATGCAATGGCAATGCCATGGCCTAAACTGTGTGTCGTTGGAGGAAAGGTGGGTTGGGAAGTTTCAGAGGAAATCCATGGAAGGAATTGAGAGATTAGGATTAGAGGAAGCCATTGGAGAAGAGAAGTAG

mRNA sequence

ATGATTGGAAAATCTCAAGCCAATGTGAAAAGCGCCAATATCGCCAGTTCTAATGGAGCTGGCGACTTCGTCGGCAAAGGCCAAACAAGAAGAAATACAGCCGCTAAAGGCACCCCAAACCATATCGGCGATCCAGAACGCCAAATGCAATGGCAATGCCATGGCCTAAACTGTGTGTCGTTGGAGGAAAGGTGGGTTGGGAAGTTTCAGAGGAAATCCATGGAAGGAATTGAGAGATTAGGATTAGAGGAAGCCATTGGAGAAGAGAAGTAG

Coding sequence (CDS)

ATGATTGGAAAATCTCAAGCCAATGTGAAAAGCGCCAATATCGCCAGTTCTAATGGAGCTGGCGACTTCGTCGGCAAAGGCCAAACAAGAAGAAATACAGCCGCTAAAGGCACCCCAAACCATATCGGCGATCCAGAACGCCAAATGCAATGGCAATGCCATGGCCTAAACTGTGTGTCGTTGGAGGAAAGGTGGGTTGGGAAGTTTCAGAGGAAATCCATGGAAGGAATTGAGAGATTAGGATTAGAGGAAGCCATTGGAGAAGAGAAGTAG

Protein sequence

MIGKSQANVKSANIASSNGAGDFVGKGQTRRNTAAKGTPNHIGDPERQMQWQCHGLNCVSLEERWVGKFQRKSMEGIERLGLEEAIGEEK*

Homology

[Close]

BLAST of Chy4G083660 vs. ExPASy TrEMBL
Match: A0A5A7UHY6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G002590 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.6e-24
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 7  ANVKSANIASSNGAGDFVGKGQTRRNTAAKGTPNHIGDPERQMQWQCHGLNCVSLEER-W 66
          ANVKSANIASS+G GDFVGKGQTRRNTAAKGTPNHIGDPERQMQWQCHGLNCV LEER W
Sbjct: 17 ANVKSANIASSDGTGDFVGKGQTRRNTAAKGTPNHIGDPERQMQWQCHGLNCVLLEERTW 76

Query: 67 VG 68
          VG
Sbjct: 77 VG 78

[Close]

BLAST of Chy4G083660 vs. NCBI nr
Match: KAA0053866.1 (hypothetical protein E6C27_scaffold135G002590 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (301), Expect = 2.89e-33
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 7  ANVKSANIASSNGAGDFVGKGQTRRNTAAKGTPNHIGDPERQMQWQCHGLNCVSLEER-W 66
          ANVKSANIASS+G GDFVGKGQTRRNTAAKGTPNHIGDPERQMQWQCHGLNCV LEER W
Sbjct: 17 ANVKSANIASSDGTGDFVGKGQTRRNTAAKGTPNHIGDPERQMQWQCHGLNCVLLEERTW 76

The following BLAST results are available for this feature:

BLAST of Chy4G083660 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G083660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UHY6	4.6e-24	93.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Chy4G083660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053866.1	2.89e-33	93.55	hypothetical protein E6C27_scaffold135G002590 [Cucumis melo var. makuwa]	[more]

BLAST of Chy4G083660 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G083660.1	Chy4G083660.1	mRNA