Chy4G081910 (gene) Cucumber (hystrix) v1

Overview
NameChy4G081910
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionOmpA-like domain-containing protein
LocationchrH04: 21383001 .. 21384187 (+)
RNA-Seq ExpressionChy4G081910
SyntenyChy4G081910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTTGGCTTTGTACAGAAAAGGTCAAGGAAGAAGAATGGCTGCTGAGAATAGAATAGTTGAGATCAGGAAGGTGAAGAGGGGGAAAGAGAAGAGAAAAAGAATGGAGACAATTTTGAAGGCTTCTTGGAATAATGTAGCTGAGAAGCCCAGCTTTTATATGCCGGCCATTTCTATTTTCTTCAATCTTCCAATATGCTGATGAGTTCTGTCATTGCGAGATTCATTTAAATAGAAGACATTCTCTGAAGTCTGAAGTGAAAAATTATGAGTCAATCTGTTAAGTCTTCTTGTGGCTGACTACCCATTTCTTCAGTCATGAATGTTGAGAGTTATTGGTGTAAATCAAATAAGCCTAAATCTACTGAATCTACTGCTTTCTTGCAGCTCATCATCAGAGGAACTCCAATCTTGAGGTTCTTGATGCATTTCTTGGTTTCTTGGAAAAGGATTTTGATAGTCTTGAAATGGCCTCCGTCATTCTTGGGCATCGTATCTCCTTTCTTGACGATTTATTTCAGCCCTATGAATTCCAACACCACGGATGCCATGCTGCCCCCAGTCACGAACAAGTTCTTGATCTTGTTGATGAACATCTCGAGGAGGTGCCAATGCCTCTAGTCTTTGCAAGACTTCTTGAAGTATATTTTCGATTCTTTCCACAGAAGCTTCCACGGACAGCAAGCGTCTCGAGGTAGTTCTTGGAGAGAGGACGGGTCGAGGTAGTTCTTGGAGAGAGGACGGGTTTTCCTCCGCCTCGCCTGCTGTCGCCTCGAATAGCCATTTGGTCCAGAAACTTTTGGCGCTCAATTGGTGTGAAACCAAAAAGTCTTTTTATTTTGTTTGAATATCCTGCTCTCCATATGAGAGGATGTACTTTATTTATAGGAAAAATCGATAGTAACTAACAGCCTATTAATAATAATAAAAAATATAACAGAAAAATTAGAAATCAGTAGATTTAAATACAACAGAAAACTAGAAAGCAGTAGATTCAGTGTATTTAGGCTTATTTGATTTACACAAGTTCTGGGTGGTTTATTTAAAGAAAGCACATTCTTTGAAGCTGTCAGTCAAACTGTCATAGTCTTCTTGTGGCTATCCATTGCTTCAATCTTGAATTTTGGTATTCTGTTGGTGAAGATGGGAAGAACCGTTCAGTTGCTAATTCTGATCTAAATCTAA

mRNA sequence

ATGCTGTTGGCTTTGTACAGAAAAGGTCAAGGAAGAAGAATGGCTGCTGAGAATAGAATAGTTGAGATCAGGAAGGTGAAGAGGGGGAAAGAGAAGAGAAAAAGAATGGAGACAATTTTGAAGGCTTCTTGGAATAATGTAGCTGAGAAGCCCAGCTTTTTCATGAATGTTGAGAGAGTTCTGGGTGGTTTATTTAAAGAAAGCACATTCTTTGAAGCTGTCAGTCAAACTGTCATAGTCTTCTTGTGGCTATCCATTGCTTCAATCTTGAATTTTGGTATTCTGTTGGTGAAGATGGGAAGAACCGTTCAGTTGCTAATTCTGATCTAAATCTAA

Coding sequence (CDS)

ATGCTGTTGGCTTTGTACAGAAAAGGTCAAGGAAGAAGAATGGCTGCTGAGAATAGAATAGTTGAGATCAGGAAGGTGAAGAGGGGGAAAGAGAAGAGAAAAAGAATGGAGACAATTTTGAAGGCTTCTTGGAATAATGTAGCTGAGAAGCCCAGCTTTTTCATGAATGTTGAGAGAGTTCTGGGTGGTTTATTTAAAGAAAGCACATTCTTTGAAGCTGTCAGTCAAACTGTCATAGTCTTCTTGTGGCTATCCATTGCTTCAATCTTGAATTTTGGTATTCTGTTGGTGAAGATGGGAAGAACCGTTCAGTTGCTAATTCTGATCTAAATCTAA

Protein sequence

MLLALYRKGQGRRMAAENRIVEIRKVKRGKEKRKRMETILKASWNNVAEKPSFFMNVERVLGGLFKESTFFEAVSQTVIVFLWLSIASILNFGILLVKMGRTVQLLILI*I*
Homology
[Close]
BLAST of Chy4G081910 vs. ExPASy TrEMBL
Match: A0A0A0LHX1 (OmpA-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G835830 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.1e-30
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 1  MLLALYRKGQGRRMAAENRIVEIRKVKRGKEKRKRMETILKASWNNVAEKPSFFMNVERV 60
          MLLALYRKGQGRRMAAENR VEIRKVKRGKEKRKRMETILKASWNNVAEKPS FMNV+RV
Sbjct: 1  MLLALYRKGQGRRMAAENRRVEIRKVKRGKEKRKRMETILKASWNNVAEKPS-FMNVDRV 60

Query: 61 LGGLFKESTFFEAVSQTVIVFL 83
          LGGLFKESTFFEAVSQTV VF+
Sbjct: 61 LGGLFKESTFFEAVSQTVTVFV 81

[Close]
BLAST of Chy4G081910 vs. NCBI nr
Match: KGN59646.1 (hypothetical protein Csa_001812 [Cucumis sativus])

HSP 1 Score: 139 bits (349), Expect = 5.57e-40
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 0 

Query: 1  MLLALYRKGQGRRMAAENRIVEIRKVKRGKEKRKRMETILKASWNNVAEKPSFFMNVERV 60
          MLLALYRKGQGRRMAAENR VEIRKVKRGKEKRKRMETILKASWNNVAEKPSF MNV+RV
Sbjct: 1  MLLALYRKGQGRRMAAENRRVEIRKVKRGKEKRKRMETILKASWNNVAEKPSF-MNVDRV 60

Query: 61 LGGLFKESTFFEAVSQTVIVF 81
          LGGLFKESTFFEAVSQTV VF
Sbjct: 61 LGGLFKESTFFEAVSQTVTVF 80

The following BLAST results are available for this feature:
BLAST of Chy4G081910 vs.
Match NameE-valueIdentityDescription
BLAST of Chy4G081910 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHX13.1e-3093.90OmpA-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G835830 P... [more]
BLAST of Chy4G081910 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59646.15.57e-4095.06hypothetical protein Csa_001812 [Cucumis sativus][more]
BLAST of Chy4G081910 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G081910.1Chy4G081910.1mRNA