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Chy4G080830 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGTAAATCTTCCAGGTTCTTCTGCCCAACTTGTCCATATGTGTCCTACTTGGAAAACAGGGTGTGTTGCTGAAATTTCTTTTTAGTTGTAAGGCCTCAAGTTGTTTGCTTCCCTTTTTTACCTATTAATTTCTTTTGTTCTGACTTAAGGATTGCATTCTCGTGGTTCTACTATTCAGGTAAAAATAAAAAGAAAGCAACATCTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGGTATACATCTTTCCCTTCTAGGTTCTTTTCTTTCCTCCTCTGTACGTAGCCTTTGTTTTTTAATCAAAATTCCACCAGCTGGAGTTGGCGAAAGATATAATCAAATAGCTATTGCAAGGGCAATGACCTGATTCACCTTTAAAAATTTTAAGTGCTCATGCATATGCACTTATATGATAGGCCAAATAAGTGTGGCAGACGGCAGTTATATTTCCTTTAATTAAATGAACTTATGAAAGATCTAAGTCACCAAAAGTCAACAAGTACCTAGAAAGAAGCCAAATTGAACTTAGCTCAATGATAATTTGCATGGTCTTCCTCCCTCCATGTTGAAGGTTTGATCCCCATTCCAGTAGTTGTTGTGCTAAAAATACTAGTAGCTACAAAGAAAGAATCCCACTGTTTGAAGTCATGATTGAGTTGGAGTATTTTACAAATTGGCAACAGTTCCGTTATCCCACATAGTATGTTTTTGTCTTTAAACTTCCTTGAAGCTTAAAAATGAAGCTCTTTAAAGCTATTAGGCTCTATAAACTTCAAAACATTTCCATTTACATGACCAACACTCCAGAAAAATATGCAGAATGAATTAATCCTTCTAAAAGGAAACACCAATTTAGTTAAGAGGAACAATGAGAACTTGGCCTGGAATAACGTGGTTAGGTTCACTGATGTTGAAGAGAATGATCACTTAAAAACTTTGCACTTTTTGGGAAGCTTTGACTTCTAATCCTCTTTCACAACTTCAATAGGATAGGTGCCTTTCTATGGACTATAGATTGATTAAGATAGTTGATGACCTTATTTGAACATGATTTGTTCTATTGGTTGTACAATCGTGTCCTTGAATTCTAAATATTTGATTTTAAATTACGGCGAAAGTTATCCTTAAGCTGCACTTCTTTGGTTCAAATTGACCCTTAGATATGTAGACTTTTTTGTATTACGAGGTTAACTTCTTAACAGATTACCAGGAGCTTTTATCCATACCATAAAAGCAATCCCTAATGAGTAATCTCTCCCATTTTTCCTTGTCATAATTTCATGCTTAAGAAAATTAGGTTTCTATCTGTAATGTTTTTATGAGAGGAAGAAAGAAAAGTTTCTGGGTTGTGGCTTATCTCTACAACAAGGAAAGGGGCAAAGTATTGGCATTATTTTGTTTTCTGAAAGTATAGGTAGGTGATATATTATAGAGAATGATAAACCTGTTGGGAACCAAGATAGTATAATACTGCCTTTGTCCCACATTAGTTAGAATGGAATGACCGCTGTTGTACTTGAGTGGCCTGACTCTCTCACTCCAATAGGCTTTTGGAGTGTGGTTTTCCAAGGTGCTTAAGTACCTAACAATTATATCAGACTGGTTGTTGACGTTTCAGAGTGAAACGGGTGGAGGGTTCTGATAGAGAGTGACTAAGTTATTGTTAGGAACCAGGATAGTATGGATGCCGTTGTTCAACATTGGTTAGAATGGAATGACCGATGTGGTGCTTAATGGCTTGGCTTGACTTTCCTATCCTAATTGCTGGTTTTTGTTTCTCTTTTTGCTATTTTGTAGCAACATGTCCAAATTGTGCGTTTGGGAAGGCTGCTTTTATACAAATACAACTGAGATCAGCTGATGAACCTGCAACAACATTTTACAAGTGCATGAACGAAAACTGTCGACAGAATTGGCGCGAGGATTAATTTATCATTACTGATTTTGTATTTGTTTTATTATTATTATTATTTTAACCCATTTTAGACGTAATTAATATGAATAAATTATTATCTTTTACATGATTAGCATCATGAATTTTGTTGGGACTTTAGAATGAGAATCGTATCACAATTGCACCTCGTATGCTGTTTTGTTCCTTAGTTTTGCATTTGGAAAAAATATAATAAAAAAGTGAGGAGAGGAAAAGTTACCGTGACCTTTGCGTATTTTCTCTTAGCAAACTTATTCGAAGATGAAATTATTCAATATATCTGAAAAATAGAGATGGAGGAAAGATAAAACTCATCTTTAAATATTTGCAAATTTCATTAGTGTTTACTATCATAGTAACGATGAAAGTATAGATTAAATTCAATTAATTACAAAAAGTATCTTCGATTGACCATAAGATTAGATAAATTACAGTTATATGAAGGATACAATTTACACCTAACATTAAAAGAATGATACAATTTACACCATTTTAAGTTTTGTTTGGTAATCATTTAATTTTTTGTTTGCTCACTATTATGATTATATATGTAAGAGGAACCAAGAGTAAAAATATAAGACAATGATGCCTTCAATACAAGAACTCTAAAAACTCATGTCCAACTGTTCAAACACATAAAAAGAAACTCTCAAGATTACTCCTTCAAATGACGAGAATCTTTATATATCAAGTATCCAATAATAAGCGCAAAACAAGTGTGATAGTCAAAATGTCTATTATTAAAAATCTCTCACAAAATAAGTAACCTTCGAAGTAAATAAAAAGTTCCAACTAGCATGCATTAATGATTAATAGATATGTGTAAAATTGATTTCAAACATAAAATTTGCAATAACAAATAAAAAGAGTCAAGAACATGATATTAAATTTCTATCTACCAGTAAAAAGTCTCACGTTTTCATCGATTTGTCAACAAACTTTTTAGATAAGATTTAATATATAATAGGAGTAAATCAACATTTTCGTTGTATTATATAAATATATATATATATATAAACACCAACAAAAAAAAAACATTAAAATATCACATATGTTAGATATAATATAATTAACGTCTAACTTATTCTAAAAGCCATATAATATATTTATATAAACGTGTAGTACACTCAAGAGTTTTTGTCAACATCAATAAATTAGTGACCTATTGGAATTGAATGAAAAAAATACATTTATAAAAATTTGTAATTTTTATTACAATTCATTTGATAATGAGTTTAAAATTAAAAAAAAATTAACTCATTTTAAAATTTAACAAAAGAAAAAAGAAATTAAAGCAAACTAAAATTTAAAATTTCTTAAAAAAAATTTTGAGACATTTTTAGAGACTTTGGTTGGATTTAGGTAATACTAAAAATATGAAATAAAAAACTTAAAATTGACATTTTCCAGAAATATCTTATCCTTATGGTTATTCCGAAGACAATTGCGAAGGCCGAGAAAGTGTTCTGGAAAACGATTGGTTGCCAATGGCAGCAGCATGGCGTCCCAACATGGATGACGTTAATTCGGACGTCGAATCAAAGGGAAACTTTGGATTGGTCCTTCTTCCCAAATCTTAA ATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGTAAATCTTCCAGGTTCTTCTGCCCAACTTGTCCATATGTGTCCTACTTGGAAAACAGGGTAAAAATAAAAAGAAAGCAACATCTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGAAATATCTTATCCTTATGGTTATTCCGAAGACAATTGCGAAGGCCGAGAAAGTGTTCTGGAAAACGATTGGTTGCCAATGGCAGCAGCATGGCGTCCCAACATGGATGACGTTAATTCGGACGTCGAATCAAAGGGAAACTTTGGATTGGTCCTTCTTCCCAAATCTTAA ATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGTAAATCTTCCAGGTTCTTCTGCCCAACTTGTCCATATGTGTCCTACTTGGAAAACAGGGTAAAAATAAAAAGAAAGCAACATCTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGAAATATCTTATCCTTATGGTTATTCCGAAGACAATTGCGAAGGCCGAGAAAGTGTTCTGGAAAACGATTGGTTGCCAATGGCAGCAGCATGGCGTCCCAACATGGATGACGTTAATTCGGACGTCGAATCAAAGGGAAACTTTGGATTGGTCCTTCTTCCCAAATCTTAA MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEEISYPYGYSEDNCEGRESVLENDWLPMAAAWRPNMDDVNSDVESKGNFGLVLLPKS* Homology
BLAST of Chy4G080830 vs. ExPASy TrEMBL
Match: A0A6J1IB59 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 PE=3 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 3.7e-32 Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
BLAST of Chy4G080830 vs. ExPASy TrEMBL
Match: A0A1S3CQ50 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 3.7e-32 Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
BLAST of Chy4G080830 vs. ExPASy TrEMBL
Match: A0A6J1EXG3 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111439113 PE=3 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 3.7e-32 Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
BLAST of Chy4G080830 vs. ExPASy TrEMBL
Match: A0A0A0LCM4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 PE=3 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 3.7e-32 Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
BLAST of Chy4G080830 vs. ExPASy TrEMBL
Match: A0A6J1DGL3 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111020260 PE=3 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30 Identity = 64/68 (94.12%), Postives = 67/68 (98.53%), Query Frame = 0
BLAST of Chy4G080830 vs. NCBI nr
Match: XP_038903069.1 (DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida]) HSP 1 Score: 145 bits (367), Expect = 1.73e-42 Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
BLAST of Chy4G080830 vs. NCBI nr
Match: XP_004141147.1 (DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >XP_008465338.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >KGN59770.1 hypothetical protein Csa_002120 [Cucumis sativus]) HSP 1 Score: 145 bits (367), Expect = 1.73e-42 Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
BLAST of Chy4G080830 vs. NCBI nr
Match: XP_022932603.1 (DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_022932604.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_022972319.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita maxima] >XP_022972320.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita maxima] >XP_023539106.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita pepo subsp. pepo] >XP_023539107.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 145 bits (367), Expect = 1.73e-42 Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
BLAST of Chy4G080830 vs. NCBI nr
Match: KAG6597716.1 (DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 145 bits (367), Expect = 5.41e-42 Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
BLAST of Chy4G080830 vs. NCBI nr
Match: KAG7029162.1 (DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 145 bits (367), Expect = 6.49e-42 Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
BLAST of Chy4G080830 vs. TAIR 10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal ) HSP 1 Score: 93.6 bits (231), Expect = 1.2e-19 Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 0
BLAST of Chy4G080830 vs. TAIR 10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal ) HSP 1 Score: 90.1 bits (222), Expect = 1.3e-18 Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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