Chy4G080820 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G080820
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH04: 20306666 .. 20307376 (-)
RNA-Seq Expression	Chy4G080820
Synteny	Chy4G080820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTACAGTTGATTGATAGCTACTGCGTATTTGGAATGGAAAGCAATGGAACTGAATTCACTGGCAAACGCCAGAAATTAGCTGTATGTTTACTCGTTTTTTGTATGTCGTTATTCTTCATATGCCAAAGTAAAAGAAGATTGGGAAATTCAACAAATTTTCACTTTTTCAGGTGGAAGAGCAGGGAAGTGATACAGACATGTCCAACCTTGTAGAAAACGAACAGTGCGAAACGATCATTAAGGGTTCCGAGGAGATGGAATCGAATATCGCTTGCCTACTTGAAAAAATCGAAAGCTTCACACAGCTGGTAGGTGGTTGATACGTTTAATCCTTGTGGGCTGAGTATTAGTTTAAGTTTTTGTTTGGCTACAAATGTTGTATATTGATCCATATTTTTCCTTCAATGAAGGTGTCTGAACTGCTGGAGTCAGGAAAGACTGCTTTTAAAGATCTTAGTAATGAATTTGAAGAGCGAATCATAGCGTGAGTTGAAATTCGAATACTTTAACCTCAAAAAGTATTTGCTGAGGACTATTTTCTCATCTTAATTTTTATCTTTCTTTCTTCCCAGCATTCATAAGGATCATGTTGATAAATGGCAAGATGAGATTAAAGAGCTGCGGTTGATTGATTCATCAAATGAGGAAGCCAGTACTATTTTATGCAATGCTCGAAATTTACTTCAGAATGGTCAGATCCAGTTTTGA

mRNA sequence

ATGCTACAGTTGATTGATAGCTACTGCGTATTTGGAATGGAAAGCAATGGAACTGAATTCACTGGCAAACGCCAGAAATTAGCTGTGGAAGAGCAGGGAAGTGATACAGACATGTCCAACCTTGTAGAAAACGAACAGTGCGAAACGATCATTAAGGGTTCCGAGGAGATGGAATCGAATATCGCTTGCCTACTTGAAAAAATCGAAAGCTTCACACAGCTGGTGTCTGAACTGCTGGAGTCAGGAAAGACTGCTTTTAAAGATCTTAGTAATGAATTTGAAGAGCGAATCATAGCCATTCATAAGGATCATGTTGATAAATGGCAAGATGAGATTAAAGAGCTGCGGTTGATTGATTCATCAAATGAGGAAGCCAGTACTATTTTATGCAATGCTCGAAATTTACTTCAGAATGGTCAGATCCAGTTTTGA

Coding sequence (CDS)

ATGCTACAGTTGATTGATAGCTACTGCGTATTTGGAATGGAAAGCAATGGAACTGAATTCACTGGCAAACGCCAGAAATTAGCTGTGGAAGAGCAGGGAAGTGATACAGACATGTCCAACCTTGTAGAAAACGAACAGTGCGAAACGATCATTAAGGGTTCCGAGGAGATGGAATCGAATATCGCTTGCCTACTTGAAAAAATCGAAAGCTTCACACAGCTGGTGTCTGAACTGCTGGAGTCAGGAAAGACTGCTTTTAAAGATCTTAGTAATGAATTTGAAGAGCGAATCATAGCCATTCATAAGGATCATGTTGATAAATGGCAAGATGAGATTAAAGAGCTGCGGTTGATTGATTCATCAAATGAGGAAGCCAGTACTATTTTATGCAATGCTCGAAATTTACTTCAGAATGGTCAGATCCAGTTTTGA

Protein sequence

MLQLIDSYCVFGMESNGTEFTGKRQKLAVEEQGSDTDMSNLVENEQCETIIKGSEEMESNIACLLEKIESFTQLVSELLESGKTAFKDLSNEFEERIIAIHKDHVDKWQDEIKELRLIDSSNEEASTILCNARNLLQNGQIQF*

Homology

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BLAST of Chy4G080820 vs. ExPASy TrEMBL
Match: A0A5D3E1L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold734G00270 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.1e-63
Identity = 129/140 (92.14%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 4   LIDSYCVFGMESNGTEFTGKRQKLAVEEQGSDTDMSNLVENEQCETIIKGSEEMESNIAC 63
           LI S CVFGMESNGTEFTGKRQKLAVEEQG DTDMSN++ENEQCETIIKGSEEMESNIAC
Sbjct: 5   LIVSNCVFGMESNGTEFTGKRQKLAVEEQGRDTDMSNVLENEQCETIIKGSEEMESNIAC 64

Query: 64  LLEKIESFTQLVSELLESGKTAFKDLSNEFEERIIAIHKDHVDKWQDEIKELRLIDSSNE 123
           LLEKIESFTQLVSELLESGKTAFK+L NEFEERIIAIHKDHV+KWQ EIKELRLIDSSNE
Sbjct: 65  LLEKIESFTQLVSELLESGKTAFKELINEFEERIIAIHKDHVEKWQHEIKELRLIDSSNE 124

Query: 124 EASTILCNARNLLQNGQIQF 144
           E STILCNARNLLQNG IQF
Sbjct: 125 EVSTILCNARNLLQNGHIQF 144

[Close]

BLAST of Chy4G080820 vs. ExPASy TrEMBL
Match: A0A0A0LI92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G844890 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.5e-61
Identity = 127/131 (96.95%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 13  MESNGTEFTGKRQKLAVEEQGSDTDMSNLVENEQCETIIKGSEEMESNIACLLEKIESFT 72
           MESNGTEF GKR KLAVEEQ SDTDMSNLVENEQCETIIKGSEEMESNIACLLEKIESFT
Sbjct: 1   MESNGTEFNGKRPKLAVEEQVSDTDMSNLVENEQCETIIKGSEEMESNIACLLEKIESFT 60

Query: 73  QLVSELLESGKTAFKDLSNEFEERIIAIHKDHVDKWQDEIKELRLIDSSNEEASTILCNA 132
           QLVSELLESGKTAFKDLSNEFEERIIAIHKDHV+KWQDEIKELRLIDSSNEEASTILCNA
Sbjct: 61  QLVSELLESGKTAFKDLSNEFEERIIAIHKDHVEKWQDEIKELRLIDSSNEEASTILCNA 120

Query: 133 RNLLQNGQIQF 144
           RNLLQNGQIQF
Sbjct: 121 RNLLQNGQIQF 131

[Close]

BLAST of Chy4G080820 vs. ExPASy TrEMBL
Match: A0A1S3CNM9 (uncharacterized protein LOC103502983 OS=Cucumis melo OX=3656 GN=LOC103502983 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.4e-59
Identity = 122/131 (93.13%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 13  MESNGTEFTGKRQKLAVEEQGSDTDMSNLVENEQCETIIKGSEEMESNIACLLEKIESFT 72
           MESNGTEFTGKRQKLAVEEQG DTDMSN++ENEQCETIIKGSEEMESNIACLLEKIESFT
Sbjct: 1   MESNGTEFTGKRQKLAVEEQGRDTDMSNVLENEQCETIIKGSEEMESNIACLLEKIESFT 60

Query: 73  QLVSELLESGKTAFKDLSNEFEERIIAIHKDHVDKWQDEIKELRLIDSSNEEASTILCNA 132
           QLVSELLESGKTAFK+L NEFEERIIAIHKDHV+KWQ EIKELRLIDSSNEE STILCNA
Sbjct: 61  QLVSELLESGKTAFKELINEFEERIIAIHKDHVEKWQHEIKELRLIDSSNEEVSTILCNA 120

Query: 133 RNLLQNGQIQF 144
           RNLLQNG IQF
Sbjct: 121 RNLLQNGHIQF 131

[Close]

BLAST of Chy4G080820 vs. ExPASy TrEMBL
Match: A0A6J1I7S6 (uncharacterized protein LOC111470787 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470787 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.1e-53
Identity = 113/131 (86.26%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 13  MESNGTEFTGKRQKLAVEEQGSDTDMSNLVENEQCETIIKGSEEMESNIACLLEKIESFT 72
           MESNGTEFTGKR KLA+ EQG DT MSN+ ENEQCET I+GSEEMESNIA LLEKIESFT
Sbjct: 1   MESNGTEFTGKRMKLAMGEQGKDTSMSNISENEQCETDIRGSEEMESNIARLLEKIESFT 60

Query: 73  QLVSELLESGKTAFKDLSNEFEERIIAIHKDHVDKWQDEIKELRLIDSSNEEASTILCNA 132
           QLVSELLESGKTAFKDLSNEFEE+IIAIHK++V++WQ EIKELRL+DSSNEEASTILCNA
Sbjct: 61  QLVSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTILCNA 120

Query: 133 RNLLQNGQIQF 144
           RNLLQNG IQF
Sbjct: 121 RNLLQNGHIQF 131

[Close]

BLAST of Chy4G080820 vs. ExPASy TrEMBL
Match: A0A6J1EXU6 (uncharacterized protein LOC111439190 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439190 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.0e-53
Identity = 112/131 (85.50%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 13  MESNGTEFTGKRQKLAVEEQGSDTDMSNLVENEQCETIIKGSEEMESNIACLLEKIESFT 72
           MESNG +FTGKR KLA+EEQG DT MSN+ ENEQCET I+GSEEMESNIA LLEKIESFT
Sbjct: 1   MESNGIDFTGKRMKLAMEEQGKDTSMSNISENEQCETDIRGSEEMESNIARLLEKIESFT 60

Query: 73  QLVSELLESGKTAFKDLSNEFEERIIAIHKDHVDKWQDEIKELRLIDSSNEEASTILCNA 132
           QLVSELLESGKTAFKDLSNEFEE+IIAIHK++V++WQ EIKELRL+DSSNEEASTILCNA
Sbjct: 61  QLVSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTILCNA 120

Query: 133 RNLLQNGQIQF 144
           RNLLQNG IQF
Sbjct: 121 RNLLQNGHIQF 131

[Close]

BLAST of Chy4G080820 vs. NCBI nr
Match: KAA0051263.1 (uncharacterized protein E6C27_scaffold2143G00210 [Cucumis melo var. makuwa] >TYK29997.1 uncharacterized protein E5676_scaffold734G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 250 bits (639), Expect = 3.87e-83
Identity = 129/140 (92.14%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 4   LIDSYCVFGMESNGTEFTGKRQKLAVEEQGSDTDMSNLVENEQCETIIKGSEEMESNIAC 63
           LI S CVFGMESNGTEFTGKRQKLAVEEQG DTDMSN++ENEQCETIIKGSEEMESNIAC
Sbjct: 5   LIVSNCVFGMESNGTEFTGKRQKLAVEEQGRDTDMSNVLENEQCETIIKGSEEMESNIAC 64

Query: 64  LLEKIESFTQLVSELLESGKTAFKDLSNEFEERIIAIHKDHVDKWQDEIKELRLIDSSNE 123
           LLEKIESFTQLVSELLESGKTAFK+L NEFEERIIAIHKDHV+KWQ EIKELRLIDSSNE
Sbjct: 65  LLEKIESFTQLVSELLESGKTAFKELINEFEERIIAIHKDHVEKWQHEIKELRLIDSSNE 124

Query: 124 EASTILCNARNLLQNGQIQF 143
           E STILCNARNLLQNG IQF
Sbjct: 125 EVSTILCNARNLLQNGHIQF 144

[Close]

BLAST of Chy4G080820 vs. NCBI nr
Match: XP_004141148.1 (uncharacterized protein LOC101207413 [Cucumis sativus] >XP_011652327.1 uncharacterized protein LOC101207413 [Cucumis sativus] >KGN59771.1 hypothetical protein Csa_000817 [Cucumis sativus])

HSP 1 Score: 244 bits (624), Expect = 4.85e-81
Identity = 127/131 (96.95%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 13  MESNGTEFTGKRQKLAVEEQGSDTDMSNLVENEQCETIIKGSEEMESNIACLLEKIESFT 72
           MESNGTEF GKR KLAVEEQ SDTDMSNLVENEQCETIIKGSEEMESNIACLLEKIESFT
Sbjct: 1   MESNGTEFNGKRPKLAVEEQVSDTDMSNLVENEQCETIIKGSEEMESNIACLLEKIESFT 60

Query: 73  QLVSELLESGKTAFKDLSNEFEERIIAIHKDHVDKWQDEIKELRLIDSSNEEASTILCNA 132
           QLVSELLESGKTAFKDLSNEFEERIIAIHKDHV+KWQDEIKELRLIDSSNEEASTILCNA
Sbjct: 61  QLVSELLESGKTAFKDLSNEFEERIIAIHKDHVEKWQDEIKELRLIDSSNEEASTILCNA 120

Query: 133 RNLLQNGQIQF 143
           RNLLQNGQIQF
Sbjct: 121 RNLLQNGQIQF 131

[Close]

BLAST of Chy4G080820 vs. NCBI nr
Match: XP_008465341.1 (PREDICTED: uncharacterized protein LOC103502983 [Cucumis melo])

HSP 1 Score: 238 bits (607), Expect = 1.89e-78
Identity = 122/131 (93.13%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 13  MESNGTEFTGKRQKLAVEEQGSDTDMSNLVENEQCETIIKGSEEMESNIACLLEKIESFT 72
           MESNGTEFTGKRQKLAVEEQG DTDMSN++ENEQCETIIKGSEEMESNIACLLEKIESFT
Sbjct: 1   MESNGTEFTGKRQKLAVEEQGRDTDMSNVLENEQCETIIKGSEEMESNIACLLEKIESFT 60

Query: 73  QLVSELLESGKTAFKDLSNEFEERIIAIHKDHVDKWQDEIKELRLIDSSNEEASTILCNA 132
           QLVSELLESGKTAFK+L NEFEERIIAIHKDHV+KWQ EIKELRLIDSSNEE STILCNA
Sbjct: 61  QLVSELLESGKTAFKELINEFEERIIAIHKDHVEKWQHEIKELRLIDSSNEEVSTILCNA 120

Query: 133 RNLLQNGQIQF 143
           RNLLQNG IQF
Sbjct: 121 RNLLQNGHIQF 131

[Close]

BLAST of Chy4G080820 vs. NCBI nr
Match: XP_038903068.1 (uncharacterized protein LOC120089754 isoform X2 [Benincasa hispida])

HSP 1 Score: 227 bits (579), Expect = 3.52e-74
Identity = 116/131 (88.55%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 13  MESNGTEFTGKRQKLAVEEQGSDTDMSNLVENEQCETIIKGSEEMESNIACLLEKIESFT 72
           MESNGTEFTGKR KLA+EEQG DT MSN++ENEQ +T I+GSEEMESNIACLLEKIESFT
Sbjct: 1   MESNGTEFTGKRMKLAMEEQGKDTGMSNVLENEQSDTSIRGSEEMESNIACLLEKIESFT 60

Query: 73  QLVSELLESGKTAFKDLSNEFEERIIAIHKDHVDKWQDEIKELRLIDSSNEEASTILCNA 132
           QLVSELLESGKT FKDLSNEFEERIIAIHKDHV+KWQ EIKELRL+DSSNEEASTILCNA
Sbjct: 61  QLVSELLESGKTTFKDLSNEFEERIIAIHKDHVEKWQHEIKELRLLDSSNEEASTILCNA 120

Query: 133 RNLLQNGQIQF 143
           RNLLQNG IQF
Sbjct: 121 RNLLQNGHIQF 131

[Close]

BLAST of Chy4G080820 vs. NCBI nr
Match: XP_023540392.1 (uncharacterized protein LOC111800780 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023540393.1 uncharacterized protein LOC111800780 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219 bits (558), Expect = 5.58e-71
Identity = 112/131 (85.50%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 13  MESNGTEFTGKRQKLAVEEQGSDTDMSNLVENEQCETIIKGSEEMESNIACLLEKIESFT 72
           MESNGTEFTGKR KLA+EEQG DT +SN+ ENEQCET I+GSEEMESNIA LLEKIESFT
Sbjct: 1   MESNGTEFTGKRMKLAMEEQGKDTSISNISENEQCETDIRGSEEMESNIARLLEKIESFT 60

Query: 73  QLVSELLESGKTAFKDLSNEFEERIIAIHKDHVDKWQDEIKELRLIDSSNEEASTILCNA 132
           QLVSELLESGKTAFKDLSNEFEE+IIAIHK++V++WQ EIKELRL+DSSNEEAST+LCNA
Sbjct: 61  QLVSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTVLCNA 120

Query: 133 RNLLQNGQIQF 143
           RNLLQNG IQF
Sbjct: 121 RNLLQNGHIQF 131

[Close]

BLAST of Chy4G080820 vs. TAIR 10
Match: AT5G03050.1 (unknown protein; Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 135.6 bits (340), Expect = 3.2e-32
Identity = 71/124 (57.26%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 23  KRQKLAVEEQGSDT----DMSNLVENEQCETIIKGSEEMESNIACLLEKIESFTQLVSEL 82
           KR + + EE   D+     + + +ENE+ ET +  S+EME +IA +L+KIESFTQ VS L
Sbjct: 16  KRMRASDEEGKGDSRDGISLDHTIENEEAETKLVASDEMELSIAQILDKIESFTQTVSNL 75

Query: 83  LESGKTAFKDLSNEFEERIIAIHKDHVDKWQDEIKELRLIDSSNEEASTILCNARNLLQN 142
           LE+GKT  K+LSNEFEER+I IHK+HV+KWQDEIKELRL+D+SNEE +++L NAR L+QN
Sbjct: 76  LETGKTMLKELSNEFEERLIMIHKEHVEKWQDEIKELRLLDASNEETTSLLHNARYLIQN 135

The following BLAST results are available for this feature:

BLAST of Chy4G080820 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G080820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1L2	2.1e-63	92.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LI92	1.5e-61	96.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G844890 PE=4 SV=1	[more]
A0A1S3CNM9	1.4e-59	93.13	uncharacterized protein LOC103502983 OS=Cucumis melo OX=3656 GN=LOC103502983 PE=...	[more]
A0A6J1I7S6	1.1e-53	86.26	uncharacterized protein LOC111470787 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EXU6	2.0e-53	85.50	uncharacterized protein LOC111439190 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Chy4G080820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051263.1	3.87e-83	92.14	uncharacterized protein E6C27_scaffold2143G00210 [Cucumis melo var. makuwa] >TYK...	[more]
XP_004141148.1	4.85e-81	96.95	uncharacterized protein LOC101207413 [Cucumis sativus] >XP_011652327.1 uncharact...	[more]
XP_008465341.1	1.89e-78	93.13	PREDICTED: uncharacterized protein LOC103502983 [Cucumis melo]	[more]
XP_038903068.1	3.52e-74	88.55	uncharacterized protein LOC120089754 isoform X2 [Benincasa hispida]	[more]
XP_023540392.1	5.58e-71	85.50	uncharacterized protein LOC111800780 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of Chy4G080820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03050.1	3.2e-32	57.26	unknown protein; Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..74
None	No IPR available	PANTHER	PTHR35500:SF1	OS03G0108700 PROTEIN	coord: 13..141
None	No IPR available	PANTHER	PTHR35500	OS03G0108700 PROTEIN	coord: 13..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G080820.1	Chy4G080820.1	mRNA