Chy4G080000 (gene) Cucumber (hystrix) v1

Overview
NameChy4G080000
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptiontranscription factor MYB46-like
LocationchrH04: 19372429 .. 19372815 (-)
RNA-Seq ExpressionChy4G080000
SyntenyChy4G080000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTTCTTGACAACCACTTTGAAATGGCCTCTATGGCTGGAAACACCAATGGCTTTCTACAAGCCCCATTGACAGAAATGGGAATGGGAATGAGATCAATGGAAGAGAGGTTTAGATATGGAAGTTTGGAGGCTCAGAGATCAATGGAACTTGAGAGAGAAGTGCTATGTGTTCCACATGAAGAGATGAACCACCCTCCATTAATGAACAATAGATGCAGTTTTGATCAGTATTTGGGTACAAATGAGCAGAATTTGAATGTGGAGGAGATGTTTGGAGATATGGGAAGCCATGGTCAATTACAAGAAAGCTTGAAGATGGGTAATGAATGGGACTTGGAGAGTTTCATGCAAGATATATCCTCATTTCCTCATTTTCTTTGA

mRNA sequence

ATGCCATTTCTTGACAACCACTTTGAAATGGCCTCTATGGCTGGAAACACCAATGGCTTTCTACAAGCCCCATTGACAGAAATGGGAATGGGAATGAGATCAATGGAAGAGAGGTTTAGATATGGAAGTTTGGAGGCTCAGAGATCAATGGAACTTGAGAGAGAAGTGCTATGTGTTCCACATGAAGAGATGAACCACCCTCCATTAATGAACAATAGATGCAGTTTTGATCAGTATTTGGGTACAAATGAGCAGAATTTGAATGTGGAGGAGATGTTTGGAGATATGGGAAGCCATGGTCAATTACAAGAAAGCTTGAAGATGGGTAATGAATGGGACTTGGAGAGTTTCATGCAAGATATATCCTCATTTCCTCATTTTCTTTGA

Coding sequence (CDS)

ATGCCATTTCTTGACAACCACTTTGAAATGGCCTCTATGGCTGGAAACACCAATGGCTTTCTACAAGCCCCATTGACAGAAATGGGAATGGGAATGAGATCAATGGAAGAGAGGTTTAGATATGGAAGTTTGGAGGCTCAGAGATCAATGGAACTTGAGAGAGAAGTGCTATGTGTTCCACATGAAGAGATGAACCACCCTCCATTAATGAACAATAGATGCAGTTTTGATCAGTATTTGGGTACAAATGAGCAGAATTTGAATGTGGAGGAGATGTTTGGAGATATGGGAAGCCATGGTCAATTACAAGAAAGCTTGAAGATGGGTAATGAATGGGACTTGGAGAGTTTCATGCAAGATATATCCTCATTTCCTCATTTTCTTTGA

Protein sequence

MPFLDNHFEMASMAGNTNGFLQAPLTEMGMGMRSMEERFRYGSLEAQRSMELEREVLCVPHEEMNHPPLMNNRCSFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESFMQDISSFPHFL*
Homology
BLAST of Chy4G080000 vs. ExPASy TrEMBL
Match: A0A0A0L9U4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G696880 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 4.8e-67
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0

Query: 1   MPFLDNHFEMASMAGNTNGFLQAPLTEMGMGMRSMEERFRYGSLEAQRSMELEREVLCVP 60
           MPFLDNHFEMASMAGNTNGFLQAPLTEMGMGMRSMEERFRYGSLEAQRSMELEREVLCVP
Sbjct: 48  MPFLDNHFEMASMAGNTNGFLQAPLTEMGMGMRSMEERFRYGSLEAQRSMELEREVLCVP 107

Query: 61  HEEMNHPPLMNNRCSFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESFMQD 120
           HEEMNHPPLMNNR SFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESFMQD
Sbjct: 108 HEEMNHPPLMNNRSSFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESFMQD 167

Query: 121 ISSFPHFL 129
           ISSFPHFL
Sbjct: 168 ISSFPHFL 175

BLAST of Chy4G080000 vs. ExPASy TrEMBL
Match: A0A5D3BPM7 (Transcription factor MYB46-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00120 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.4e-64
Identity = 126/129 (97.67%), Postives = 126/129 (97.67%), Query Frame = 0

Query: 1   MPFLDNHFEMASMAGNTNGFLQAPLTEMGMGMRSMEERFRYGSLEAQRSMELEREVLCVP 60
           MPFLDNHFEMASMAGNTNGFLQAPLTEMGMGMR MEERFRYGSLEAQRSMELEREVLCVP
Sbjct: 189 MPFLDNHFEMASMAGNTNGFLQAPLTEMGMGMR-MEERFRYGSLEAQRSMELEREVLCVP 248

Query: 61  HEEMNHPPLMNNRCSFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESFMQD 120
           HEEMNHPPLMNNR SFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESFMQD
Sbjct: 249 HEEMNHPPLMNNRSSFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESFMQD 308

Query: 121 I-SSFPHFL 129
           I SSFPHFL
Sbjct: 309 ISSSFPHFL 316

BLAST of Chy4G080000 vs. ExPASy TrEMBL
Match: A0A1S3CFJ0 (transcription factor MYB46-like OS=Cucumis melo OX=3656 GN=LOC103500311 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.4e-64
Identity = 126/129 (97.67%), Postives = 126/129 (97.67%), Query Frame = 0

Query: 1   MPFLDNHFEMASMAGNTNGFLQAPLTEMGMGMRSMEERFRYGSLEAQRSMELEREVLCVP 60
           MPFLDNHFEMASMAGNTNGFLQAPLTEMGMGMR MEERFRYGSLEAQRSMELEREVLCVP
Sbjct: 189 MPFLDNHFEMASMAGNTNGFLQAPLTEMGMGMR-MEERFRYGSLEAQRSMELEREVLCVP 248

Query: 61  HEEMNHPPLMNNRCSFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESFMQD 120
           HEEMNHPPLMNNR SFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESFMQD
Sbjct: 249 HEEMNHPPLMNNRSSFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESFMQD 308

Query: 121 I-SSFPHFL 129
           I SSFPHFL
Sbjct: 309 ISSSFPHFL 316

BLAST of Chy4G080000 vs. ExPASy TrEMBL
Match: A0A6J1GC35 (transcription factor MYB46-like OS=Cucurbita moschata OX=3662 GN=LOC111452781 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.8e-49
Identity = 106/131 (80.92%), Postives = 112/131 (85.50%), Query Frame = 0

Query: 1   MPFLDNHFEMASMAGNTNGFLQAP---LTEMGMGMRSMEERFRYGSLEAQRSMELEREVL 60
           MPFLDN+FEMASM G TNGFLQAP    TEMGM M  MEER  YGSLEAQRSME+EREVL
Sbjct: 190 MPFLDNNFEMASMVGATNGFLQAPGGCATEMGMRM-IMEERLSYGSLEAQRSMEVEREVL 249

Query: 61  CVPHEEMNHPPLMNNRCSFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESF 120
           C+PHEE      MNNR +FD+YLGTNEQNLNVEEMFGDMGSHGQ+QESLKMGNEWDLESF
Sbjct: 250 CLPHEE------MNNRSNFDEYLGTNEQNLNVEEMFGDMGSHGQVQESLKMGNEWDLESF 309

Query: 121 MQDISSFPHFL 129
           M DISSFPHFL
Sbjct: 310 MLDISSFPHFL 313

BLAST of Chy4G080000 vs. ExPASy TrEMBL
Match: A0A6J1KCL7 (transcription factor MYB46-like OS=Cucurbita maxima OX=3661 GN=LOC111493095 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.7e-48
Identity = 105/131 (80.15%), Postives = 112/131 (85.50%), Query Frame = 0

Query: 1   MPFLDNHFEMASMAGNTNGFLQAP---LTEMGMGMRSMEERFRYGSLEAQRSMELEREVL 60
           MPFLDN+FEMASM G TNGFLQAP    TEMGM M  ME+R  YGSLEAQRSMELEREVL
Sbjct: 190 MPFLDNNFEMASMVGATNGFLQAPGGCATEMGMRM-IMEQRLSYGSLEAQRSMELEREVL 249

Query: 61  CVPHEEMNHPPLMNNRCSFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESF 120
           C+PHEE      MNNR +FD+YLGTNEQNLN+EEMFGDM SHGQ+QESLKMGNEWDLESF
Sbjct: 250 CLPHEE------MNNRSNFDEYLGTNEQNLNMEEMFGDMESHGQVQESLKMGNEWDLESF 309

Query: 121 MQDISSFPHFL 129
           MQDISSFPHFL
Sbjct: 310 MQDISSFPHFL 313

BLAST of Chy4G080000 vs. NCBI nr
Match: XP_004149614.1 (transcription factor MYB46 [Cucumis sativus] >XP_031737713.1 transcription factor MYB46 [Cucumis sativus] >KAE8650933.1 hypothetical protein Csa_001273 [Cucumis sativus])

HSP 1 Score: 263 bits (673), Expect = 4.13e-86
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0

Query: 1   MPFLDNHFEMASMAGNTNGFLQAPLTEMGMGMRSMEERFRYGSLEAQRSMELEREVLCVP 60
           MPFLDNHFEMASMAGNTNGFLQAPLTEMGMGMRSMEERFRYGSLEAQRSMELEREVLCVP
Sbjct: 189 MPFLDNHFEMASMAGNTNGFLQAPLTEMGMGMRSMEERFRYGSLEAQRSMELEREVLCVP 248

Query: 61  HEEMNHPPLMNNRCSFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESFMQD 120
           HEEMNHPPLMNNR SFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESFMQD
Sbjct: 249 HEEMNHPPLMNNRSSFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESFMQD 308

Query: 121 ISSFPHFL 128
           ISSFPHFL
Sbjct: 309 ISSFPHFL 316

BLAST of Chy4G080000 vs. NCBI nr
Match: XP_008461794.1 (PREDICTED: transcription factor MYB46-like [Cucumis melo] >KAA0048349.1 transcription factor MYB46-like [Cucumis melo var. makuwa] >TYK01115.1 transcription factor MYB46-like [Cucumis melo var. makuwa])

HSP 1 Score: 253 bits (645), Expect = 7.30e-82
Identity = 126/129 (97.67%), Postives = 126/129 (97.67%), Query Frame = 0

Query: 1   MPFLDNHFEMASMAGNTNGFLQAPLTEMGMGMRSMEERFRYGSLEAQRSMELEREVLCVP 60
           MPFLDNHFEMASMAGNTNGFLQAPLTEMGMGMR MEERFRYGSLEAQRSMELEREVLCVP
Sbjct: 189 MPFLDNHFEMASMAGNTNGFLQAPLTEMGMGMR-MEERFRYGSLEAQRSMELEREVLCVP 248

Query: 61  HEEMNHPPLMNNRCSFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESFMQD 120
           HEEMNHPPLMNNR SFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESFMQD
Sbjct: 249 HEEMNHPPLMNNRSSFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESFMQD 308

Query: 121 ISS-FPHFL 128
           ISS FPHFL
Sbjct: 309 ISSSFPHFL 316

BLAST of Chy4G080000 vs. NCBI nr
Match: XP_038905632.1 (transcription factor MYB46-like [Benincasa hispida])

HSP 1 Score: 223 bits (568), Expect = 3.82e-70
Identity = 113/132 (85.61%), Postives = 118/132 (89.39%), Query Frame = 0

Query: 1   MPFLDNHFEMASMAGNTNGFLQAPLTEMGMGM---RSMEERFRYGSLEAQRSMELEREVL 60
           MPFLDN+FEMAS+AG  NGFLQ  LTEMGMGM     MEERF YG+LE QRSMELEREVL
Sbjct: 189 MPFLDNNFEMASVAGANNGFLQPSLTEMGMGMGMGMRMEERFSYGNLEGQRSMELEREVL 248

Query: 61  CVPHEEMNHPPLMNN-RCSFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLES 120
           C+PHEEM +PPLMNN R SFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLES
Sbjct: 249 CLPHEEMMNPPLMNNNRSSFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLES 308

Query: 121 FMQDISSFPHFL 128
           FMQDISSFPHFL
Sbjct: 309 FMQDISSFPHFL 320

BLAST of Chy4G080000 vs. NCBI nr
Match: KAG7036583.1 (hypothetical protein SDJN02_00202, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203 bits (517), Expect = 4.35e-64
Identity = 106/131 (80.92%), Postives = 112/131 (85.50%), Query Frame = 0

Query: 1   MPFLDNHFEMASMAGNTNGFLQAP---LTEMGMGMRSMEERFRYGSLEAQRSMELEREVL 60
           MPFLDN+FEMASM G TNGFLQAP    TEMGM M  MEER  YGSLEAQRSME+EREVL
Sbjct: 72  MPFLDNNFEMASMVGATNGFLQAPGGCATEMGMRM-IMEERLSYGSLEAQRSMEVEREVL 131

Query: 61  CVPHEEMNHPPLMNNRCSFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESF 120
           C+PHEEMN      NR +FD+YLGTNEQNLNVEEMFGDMGSHGQ+QESLKMGNEWDLESF
Sbjct: 132 CLPHEEMN------NRSNFDEYLGTNEQNLNVEEMFGDMGSHGQVQESLKMGNEWDLESF 191

Query: 121 MQDISSFPHFL 128
           M DISSFPHFL
Sbjct: 192 MLDISSFPHFL 195

BLAST of Chy4G080000 vs. NCBI nr
Match: XP_022949432.1 (transcription factor MYB46-like [Cucurbita moschata] >XP_022949433.1 transcription factor MYB46-like [Cucurbita moschata])

HSP 1 Score: 203 bits (517), Expect = 1.60e-62
Identity = 106/131 (80.92%), Postives = 112/131 (85.50%), Query Frame = 0

Query: 1   MPFLDNHFEMASMAGNTNGFLQAP---LTEMGMGMRSMEERFRYGSLEAQRSMELEREVL 60
           MPFLDN+FEMASM G TNGFLQAP    TEMGM M  MEER  YGSLEAQRSME+EREVL
Sbjct: 190 MPFLDNNFEMASMVGATNGFLQAPGGCATEMGMRM-IMEERLSYGSLEAQRSMEVEREVL 249

Query: 61  CVPHEEMNHPPLMNNRCSFDQYLGTNEQNLNVEEMFGDMGSHGQLQESLKMGNEWDLESF 120
           C+PHEEMN      NR +FD+YLGTNEQNLNVEEMFGDMGSHGQ+QESLKMGNEWDLESF
Sbjct: 250 CLPHEEMN------NRSNFDEYLGTNEQNLNVEEMFGDMGSHGQVQESLKMGNEWDLESF 309

Query: 121 MQDISSFPHFL 128
           M DISSFPHFL
Sbjct: 310 MLDISSFPHFL 313

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L9U44.8e-6799.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G696880 PE=4 SV=1[more]
A0A5D3BPM78.4e-6497.67Transcription factor MYB46-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A1S3CFJ08.4e-6497.67transcription factor MYB46-like OS=Cucumis melo OX=3656 GN=LOC103500311 PE=4 SV=... [more]
A0A6J1GC355.8e-4980.92transcription factor MYB46-like OS=Cucurbita moschata OX=3662 GN=LOC111452781 PE... [more]
A0A6J1KCL71.7e-4880.15transcription factor MYB46-like OS=Cucurbita maxima OX=3661 GN=LOC111493095 PE=4... [more]
Match NameE-valueIdentityDescription
XP_004149614.14.13e-8699.22transcription factor MYB46 [Cucumis sativus] >XP_031737713.1 transcription facto... [more]
XP_008461794.17.30e-8297.67PREDICTED: transcription factor MYB46-like [Cucumis melo] >KAA0048349.1 transcri... [more]
XP_038905632.13.82e-7085.61transcription factor MYB46-like [Benincasa hispida][more]
KAG7036583.14.35e-6480.92hypothetical protein SDJN02_00202, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022949432.11.60e-6280.92transcription factor MYB46-like [Cucurbita moschata] >XP_022949433.1 transcripti... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G080000.1Chy4G080000.1mRNA