Chy4G079710 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G079710
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	NADH-ubiquinone oxidoreductase chain 1
Location	chrH04: 19058911 .. 19059105 (-)
RNA-Seq Expression	Chy4G079710
Synteny	Chy4G079710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTTGTACAACGTCGAAAGGGTCCTGCTGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTTGAAATTGATGATAAAAGAACCTCTTTCACCAATTATTGCTAAATTTCTCCCTTTTCAGAATGGCTTCAGTGGCTACATTTATGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGA

mRNA sequence

ATGGCTTTTGTACAACGTCGAAAGGGTCCTGCTGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTTGAAATTGATGATAAAAGAACCTCTTTCACCAATTATTGCTAAATTTCTCCCTTTTCAGAATGGCTTCAGTGGCTACATTTATGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGA

Coding sequence (CDS)

ATGGCTTTTGTACAACGTCGAAAGGGTCCTGCTGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTTGAAATTGATGATAAAAGAACCTCTTTCACCAATTATTGCTAAATTTCTCCCTTTTCAGAATGGCTTCAGTGGCTACATTTATGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGA

Protein sequence

MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQNGFSGYIYVKSGRSGRCTF*

Homology

[Close]

BLAST of Chy4G079710 vs. ExPASy Swiss-Prot
Match: P92558 (NADH-ubiquinone oxidoreductase chain 1 OS=Arabidopsis thaliana OX=3702 GN=ND1 PE=1 SV=4)

HSP 1 Score: 73.6 bits (179), Expect = 9.5e-13
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQ 46
          MAFVQRRKGP VVGSFGLLQPLADGLKL++KEP+SP  A F  F+
Sbjct: 31 MAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFFLFR 75

[Close]

BLAST of Chy4G079710 vs. ExPASy Swiss-Prot
Match: Q01148 (NADH-ubiquinone oxidoreductase chain 1 OS=Triticum aestivum OX=4565 GN=ND1 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.5e-13
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQ 46
          MAFVQRRKGP VVGSFGLLQPLADGLKL++KEP+SP  A F  F+
Sbjct: 31 MAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFFLFR 75

[Close]

BLAST of Chy4G079710 vs. ExPASy Swiss-Prot
Match: P31839 (NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera berteroana OX=3950 GN=ND1 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQ 46
          MAFVQRRKGP VVGSFGLLQPLADGLKL++KEP+SP  A F  F+
Sbjct: 37 MAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFSLFR 81

[Close]

BLAST of Chy4G079710 vs. ExPASy Swiss-Prot
Match: Q01300 (NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida OX=4102 GN=ND1 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQ 46
          MAFVQRRKGP VVGSFGLLQPLADGLKL++KEP+SP  A F  F+
Sbjct: 31 MAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFSLFR 75

[Close]

BLAST of Chy4G079710 vs. ExPASy Swiss-Prot
Match: P26845 (NADH-ubiquinone oxidoreductase chain 1 OS=Marchantia polymorpha OX=3197 GN=ND1 PE=3 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 2.9e-09
Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPF 45
          MA +QRRKGP VVG  GLLQPLADGLKLMIKEP+ P  A    F
Sbjct: 34 MASMQRRKGPNVVGILGLLQPLADGLKLMIKEPILPSSANIFIF 77

[Close]

BLAST of Chy4G079710 vs. ExPASy TrEMBL
Match: A0A453BL68 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.2e-14
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQNGFSG-YIYVKSGRS 60
          MAFVQ RKGP VVGSFGLLQPLADGLKL++KEP+SP  A F  F       ++ VKSGR 
Sbjct: 1  MAFVQHRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFSLFLEWLQWLHLCVKSGRL 60

Query: 61 GRCTF 65
          GRCTF
Sbjct: 61 GRCTF 65

[Close]

BLAST of Chy4G079710 vs. ExPASy TrEMBL
Match: D5I3E6 (NADH-ubiquinone oxidoreductase chain 1 OS=Cucurbita pepo OX=3663 GN=nad1 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.2e-11
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQ 46
          MAFVQRRKGP VVGSFGLLQPLADGLKLMIKEPLSP  A F  F+
Sbjct: 31 MAFVQRRKGPDVVGSFGLLQPLADGLKLMIKEPLSPSSANFFLFR 75

[Close]

BLAST of Chy4G079710 vs. ExPASy TrEMBL
Match: G3EU12 (NADH-ubiquinone oxidoreductase chain 1 OS=Cucumis melo subsp. melo OX=412675 GN=nad1 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-11
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQ 46
          MAFVQRRKGP VVGSFGLLQPLADGLKLMIKEPLSP  A F  F+
Sbjct: 31 MAFVQRRKGPDVVGSFGLLQPLADGLKLMIKEPLSPSSANFSLFR 75

[Close]

BLAST of Chy4G079710 vs. ExPASy TrEMBL
Match: G3EIX4 (NADH-ubiquinone oxidoreductase chain 1 OS=Cucumis sativus OX=3659 GN=nad1 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-11
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQ 46
          MAFVQRRKGP VVGSFGLLQPLADGLKLMIKEPLSP  A F  F+
Sbjct: 31 MAFVQRRKGPDVVGSFGLLQPLADGLKLMIKEPLSPSSANFSLFR 75

[Close]

BLAST of Chy4G079710 vs. ExPASy TrEMBL
Match: A0A3Q9CX26 (NADH-ubiquinone oxidoreductase chain 1 OS=Cucumis melo var. momordica OX=2034244 GN=nad1 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-11
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQ 46
          MAFVQRRKGP VVGSFGLLQPLADGLKLMIKEPLSP  A F  F+
Sbjct: 31 MAFVQRRKGPDVVGSFGLLQPLADGLKLMIKEPLSPSSANFSLFR 75

[Close]

BLAST of Chy4G079710 vs. NCBI nr
Match: AOF46959.1 (NADH dehydrogenase subunit 1, partial [Maundia triglochinoides])

HSP 1 Score: 75.1 bits (183), Expect = 2.36e-15
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQ 45
          MAFVQRRKGP VVGSFGLLQPLADGLKLMIKEP+SP  A F  F+
Sbjct: 31 MAFVQRRKGPDVVGSFGLLQPLADGLKLMIKEPISPSSANFSLFR 75

[Close]

BLAST of Chy4G079710 vs. NCBI nr
Match: AOF46960.1 (NADH dehydrogenase subunit 1, partial [Triglochin maritima] >AOF46961.1 NADH dehydrogenase subunit 1, partial [Potamogeton natans] >AOF46962.1 NADH dehydrogenase subunit 1, partial [Zannichellia palustris] >AOF46963.1 NADH dehydrogenase subunit 1, partial [Amphibolis sp. AC-2016] >AOF46965.1 NADH dehydrogenase subunit 1, partial [Zostera marina] >ARX11127.1 NADH dehydrogenase subunit 1, partial [Zostera noltei])

HSP 1 Score: 75.1 bits (183), Expect = 2.36e-15
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQ 45
          MAFVQRRKGP VVGSFGLLQPLADGLKLMIKEP+SP  A F  F+
Sbjct: 31 MAFVQRRKGPDVVGSFGLLQPLADGLKLMIKEPISPSSANFSLFR 75

[Close]

BLAST of Chy4G079710 vs. NCBI nr
Match: AOF46964.1 (NADH dehydrogenase subunit 1, partial [Halodule wrightii])

HSP 1 Score: 75.1 bits (183), Expect = 2.36e-15
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQ 45
          MAFVQRRKGP VVGSFGLLQPLADGLKLMIKEP+SP  A F  F+
Sbjct: 31 MAFVQRRKGPDVVGSFGLLQPLADGLKLMIKEPISPSSANFSLFR 75

[Close]

BLAST of Chy4G079710 vs. NCBI nr
Match: AFK49321.1 (unknown [Lotus japonicus])

HSP 1 Score: 73.6 bits (179), Expect = 3.81e-15
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQ 45
          MAFVQRRKGP VVGSFGLLQPLADGLKL++KEP+SP  A F  F+
Sbjct: 1  MAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFFLFR 45

[Close]

BLAST of Chy4G079710 vs. NCBI nr
Match: EPS74732.1 (hypothetical protein M569_00007, partial [Genlisea aurea])

HSP 1 Score: 74.3 bits (181), Expect = 4.85e-15
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQ 45
          MAFVQRRKGP VVGSFGLLQPLADGLKL+IKEP+SP  A F  F+
Sbjct: 31 MAFVQRRKGPDVVGSFGLLQPLADGLKLIIKEPISPSSANFFLFR 75

[Close]

BLAST of Chy4G079710 vs. TAIR 10
Match: AT2G07785.1 (NADH dehydrogenase family protein )

HSP 1 Score: 71.2 bits (173), Expect = 3.4e-13
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQ 46
          MAFVQRRKGP VVGSFGLLQPLADG KL++KEP+SP  A F  F+
Sbjct: 1  MAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSSANFFLFR 45

[Close]

BLAST of Chy4G079710 vs. TAIR 10
Match: ATMG01120.1 (NADH dehydrogenase 1B )

HSP 1 Score: 71.2 bits (173), Expect = 3.4e-13
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQ 46
          MAFVQRRKGP VVGSFGLLQPLADG KL++KEP+SP  A F  F+
Sbjct: 31 MAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSSANFFLFR 75

[Close]

BLAST of Chy4G079710 vs. TAIR 10
Match: ATMG00516.1 (NADH dehydrogenase 1C )

HSP 1 Score: 71.2 bits (173), Expect = 3.4e-13
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQ 46
          MAFVQRRKGP VVGSFGLLQPLADG KL++KEP+SP  A F  F+
Sbjct: 31 MAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSSANFFLFR 75

[Close]

BLAST of Chy4G079710 vs. TAIR 10
Match: ATMG01275.1 (NADH dehydrogenase 1A )

HSP 1 Score: 71.2 bits (173), Expect = 3.4e-13
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1  MAFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSPIIAKFLPFQ 46
          MAFVQRRKGP VVGSFGLLQPLADG KL++KEP+SP  A F  F+
Sbjct: 31 MAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSSANFFLFR 75

[Close]

BLAST of Chy4G079710 vs. TAIR 10
Match: ATCG01100.1 (NADH dehydrogenase family protein )

HSP 1 Score: 41.2 bits (95), Expect = 3.7e-04
Identity = 19/35 (54.29%), Postives = 23/35 (65.71%), Query Frame = 0


Query: 2  AFVQRRKGPAVVGSFGLLQPLADGLKLMIKEPLSP 37
          A +Q+R GP   G  G+LQ LADG KL+ KE L P
Sbjct: 56 AGIQQRIGPEYAGPLGILQALADGTKLLFKENLRP 90

The following BLAST results are available for this feature:

BLAST of Chy4G079710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92558	9.5e-13	77.78	NADH-ubiquinone oxidoreductase chain 1 OS=Arabidopsis thaliana OX=3702 GN=ND1 PE...	[more]
Q01148	9.5e-13	77.78	NADH-ubiquinone oxidoreductase chain 1 OS=Triticum aestivum OX=4565 GN=ND1 PE=2 ...	[more]
P31839	1.6e-12	77.78	NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera berteroana OX=3950 GN=ND1 PE...	[more]
Q01300	1.6e-12	77.78	NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida OX=4102 GN=ND1 PE=3 SV...	[more]
P26845	2.9e-09	70.45	NADH-ubiquinone oxidoreductase chain 1 OS=Marchantia polymorpha OX=3197 GN=ND1 P...	[more]

BLAST of Chy4G079710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A453BL68	5.2e-14	67.69	Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 S...	[more]
D5I3E6	4.2e-11	84.44	NADH-ubiquinone oxidoreductase chain 1 OS=Cucurbita pepo OX=3663 GN=nad1 PE=3 SV...	[more]
G3EU12	7.1e-11	84.44	NADH-ubiquinone oxidoreductase chain 1 OS=Cucumis melo subsp. melo OX=412675 GN=...	[more]
G3EIX4	7.1e-11	84.44	NADH-ubiquinone oxidoreductase chain 1 OS=Cucumis sativus OX=3659 GN=nad1 PE=3 S...	[more]
A0A3Q9CX26	7.1e-11	84.44	NADH-ubiquinone oxidoreductase chain 1 OS=Cucumis melo var. momordica OX=2034244...	[more]

BLAST of Chy4G079710 vs. NCBI nr


Match Name	E-value	Identity	Description
AOF46959.1	2.36e-15	82.22	NADH dehydrogenase subunit 1, partial [Maundia triglochinoides]	[more]
AOF46960.1	2.36e-15	82.22	NADH dehydrogenase subunit 1, partial [Triglochin maritima] >AOF46961.1 NADH deh...	[more]
AOF46964.1	2.36e-15	82.22	NADH dehydrogenase subunit 1, partial [Halodule wrightii]	[more]
AFK49321.1	3.81e-15	77.78	unknown [Lotus japonicus]	[more]
EPS74732.1	4.85e-15	80.00	hypothetical protein M569_00007, partial [Genlisea aurea]	[more]

BLAST of Chy4G079710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07785.1	3.4e-13	75.56	NADH dehydrogenase family protein	[more]
ATMG01120.1	3.4e-13	75.56	NADH dehydrogenase 1B	[more]
ATMG00516.1	3.4e-13	75.56	NADH dehydrogenase 1C	[more]
ATMG01275.1	3.4e-13	75.56	NADH dehydrogenase 1A	[more]
ATCG01100.1	3.7e-04	54.29	NADH dehydrogenase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PFAM	PF00146	NADHdh	coord: 1..40 e-value: 2.1E-11 score: 43.7
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PANTHER	PTHR11432	NADH DEHYDROGENASE SUBUNIT 1	coord: 1..45
None	No IPR available	PANTHER	PTHR11432:SF20	NADH DEHYDROGENASE 1A	coord: 1..45
IPR018086	NADH:ubiquinone oxidoreductase, subunit 1, conserved site	PROSITE	PS00667	COMPLEX1_ND1_1	coord: 17..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G079710.1	Chy4G079710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity