Chy4G079330 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G079330
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DUF4283 domain-containing protein
Location	chrH04: 18712308 .. 18712895 (-)
RNA-Seq Expression	Chy4G079330
Synteny	Chy4G079330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGGCCAAATCTAGCTGGTGGGCCTGAGTATAAAAAGAGATTGGATGGGCTGAAGGTCACTAACAATGTTGGGCTAGGCAAATCAAATGGGAATTCGGCCAACGGTCCTTGTAAACAACCAGAATCTAATGGTTCAAAATCTTCATAGGCCCCCCTCTTTGGTTCTCCCAGTGTTAAAACACTTACTTATACTCTTCCTACAACCGTTGATGATAAAATTGTTGTAGTTCCGATCGAAGAGGTTATTGCCCAAGGAGTTCGGATGTGGGAAAATTCTTTAGTTGGGCAACTGATTGATGTAAAAATGCCCTATACCGTTATTTATCGGCTTATTGAGAAAATATGGGGTAAATTAGAAATGGCTACGATAACAATTCTGGAGAACGATCTCATTTGTTTTCAATTCAGAAACCTAAAATATGTTGAGTGGATCCTATCTCGTGGACCGTGGCATCTAGGCGGCAAACCTATGCTCCTCCGTAAATGTACCCCAGATATTGTCCCTGAATCCTTTGTTTTCGATTTTGTTCCTGTTTGGATAAAACTTGGTAGAATCCCTATGGAGTTGTGGATAGAATCATGA

mRNA sequence

ATGGATGGGCCAAATCTAGCTGGTGGGCCTGAGTATAAAAAGAGATTGGATGGGCTGAAGGTCACTAACAATGTTGGGCTAGGCAAATCAAATGGGAATTCGGCCAACGGTCCTTGTAAACAACCAGAATCTAATGTTCCGATCGAAGAGGTTATTGCCCAAGGAGTTCGGATGTGGGAAAATTCTTTAGTTGGGCAACTGATTGATGTAAAAATGCCCTATACCGTTATTTATCGGCTTATTGAGAAAATATGGGGTAAATTAGAAATGGCTACGATAACAATTCTGGAGAACGATCTCATTTGTTTTCAATTCAGAAACCTAAAATATGTTGAGTGGATCCTATCTCGTGGACCGTGGCATCTAGGCGGCAAACCTATGCTCCTCCGTAAATGTACCCCAGATATTGTCCCTGAATCCTTTGTTTTCGATTTTGTTCCTGTTTGGATAAAACTTGGTAGAATCCCTATGGAGTTGTGGATAGAATCATGA

Coding sequence (CDS)

ATGGATGGGCCAAATCTAGCTGGTGGGCCTGAGTATAAAAAGAGATTGGATGGGCTGAAGGTCACTAACAATGTTGGGCTAGGCAAATCAAATGGGAATTCGGCCAACGGTCCTTGTAAACAACCAGAATCTAATGTTCCGATCGAAGAGGTTATTGCCCAAGGAGTTCGGATGTGGGAAAATTCTTTAGTTGGGCAACTGATTGATGTAAAAATGCCCTATACCGTTATTTATCGGCTTATTGAGAAAATATGGGGTAAATTAGAAATGGCTACGATAACAATTCTGGAGAACGATCTCATTTGTTTTCAATTCAGAAACCTAAAATATGTTGAGTGGATCCTATCTCGTGGACCGTGGCATCTAGGCGGCAAACCTATGCTCCTCCGTAAATGTACCCCAGATATTGTCCCTGAATCCTTTGTTTTCGATTTTGTTCCTGTTTGGATAAAACTTGGTAGAATCCCTATGGAGTTGTGGATAGAATCATGA

Protein sequence

MDGPNLAGGPEYKKRLDGLKVTNNVGLGKSNGNSANGPCKQPESNVPIEEVIAQGVRMWENSLVGQLIDVKMPYTVIYRLIEKIWGKLEMATITILENDLICFQFRNLKYVEWILSRGPWHLGGKPMLLRKCTPDIVPESFVFDFVPVWIKLGRIPMELWIES*

Homology

[Close]

BLAST of Chy4G079330 vs. ExPASy TrEMBL
Match: A0A5A7TK34 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00070 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 3.0e-50
Identity = 93/118 (78.81%), Postives = 106/118 (89.83%), Query Frame = 0


Query: 46  VPIEEVIAQGVRMWENSLVGQLIDVKMPYTVIYRLIEKIWGKLEMATITILENDLICFQF 105
           VP EEVI QG+R+WENSLVG+LID  +PY VI+RL+EKIWGK+EM TITILENDLICFQF
Sbjct: 190 VPPEEVIVQGIRVWENSLVGKLIDANLPYVVIHRLVEKIWGKIEMPTITILENDLICFQF 249

Query: 106 RNLKYVEWILSRGPWHLGGKPMLLRKCTPDIVPESFVFDFVPVWIKLGRIPMELWIES 164
           R  K +EWILSRGPWHLGGKPMLLRK TP IVPESF+F+ +PVWIKLGRIP+ELWIE+
Sbjct: 250 RWAKSLEWILSRGPWHLGGKPMLLRKWTPGIVPESFMFNSIPVWIKLGRIPIELWIEA 307

[Close]

BLAST of Chy4G079330 vs. ExPASy TrEMBL
Match: A0A5A7V507 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00710 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.8e-48
Identity = 91/118 (77.12%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 46  VPIEEVIAQGVRMWENSLVGQLIDVKMPYTVIYRLIEKIWGKLEMATITILENDLICFQF 105
           +P EEVI QG+R+WENSLVGQLID K+PY+VI RL+EKI GK+EM  ITILENDLICFQF
Sbjct: 380 IPTEEVIDQGIRVWENSLVGQLIDAKLPYSVIQRLVEKICGKIEMPIITILENDLICFQF 439

Query: 106 RNLKYVEWILSRGPWHLGGKPMLLRKCTPDIVPESFVFDFVPVWIKLGRIPMELWIES 164
           R  K VEWILSRGPWHLGGKPML RK TP IVPESFVF+ VPVWI LG++PMELW E+
Sbjct: 440 RRSKSVEWILSRGPWHLGGKPMLFRKWTPGIVPESFVFNSVPVWITLGKLPMELWTEA 497

[Close]

BLAST of Chy4G079330 vs. ExPASy TrEMBL
Match: A0A1S3CC83 (uncharacterized protein LOC103499323 OS=Cucumis melo OX=3656 GN=LOC103499323 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.8e-48
Identity = 91/118 (77.12%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 46  VPIEEVIAQGVRMWENSLVGQLIDVKMPYTVIYRLIEKIWGKLEMATITILENDLICFQF 105
           +P EEVI QG+R+WENSLVGQLID K+PY+VI RL+EKI GK+EM  ITILENDLICFQF
Sbjct: 261 IPTEEVIDQGIRVWENSLVGQLIDAKLPYSVIQRLVEKICGKIEMPIITILENDLICFQF 320

Query: 106 RNLKYVEWILSRGPWHLGGKPMLLRKCTPDIVPESFVFDFVPVWIKLGRIPMELWIES 164
           R  K VEWILSRGPWHLGGKPML RK TP IVPESFVF+ VPVWI LG++PMELW E+
Sbjct: 321 RRSKSVEWILSRGPWHLGGKPMLFRKWTPGIVPESFVFNSVPVWITLGKLPMELWTEA 378

[Close]

BLAST of Chy4G079330 vs. ExPASy TrEMBL
Match: A0A5D3DSG9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003060 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 6.3e-48
Identity = 91/118 (77.12%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 46  VPIEEVIAQGVRMWENSLVGQLIDVKMPYTVIYRLIEKIWGKLEMATITILENDLICFQF 105
           +P EEVI QG+R+WENSLVGQLID K+PY+VI RL+EKI GK+EM  ITILENDLICFQF
Sbjct: 177 IPTEEVIDQGIRVWENSLVGQLIDAKLPYSVIQRLVEKICGKIEMPIITILENDLICFQF 236

Query: 106 RNLKYVEWILSRGPWHLGGKPMLLRKCTPDIVPESFVFDFVPVWIKLGRIPMELWIES 164
           R  K VEWILSRGPWHLGGKPML RK TP IVPESFVF+ VPVWI LG++PMELW E+
Sbjct: 237 RRSKSVEWILSRGPWHLGGKPMLFRKWTPAIVPESFVFNSVPVWITLGKLPMELWTEA 294

[Close]

BLAST of Chy4G079330 vs. ExPASy TrEMBL
Match: A0A5D3D5X6 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00380 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.0e-45
Identity = 88/117 (75.21%), Postives = 99/117 (84.62%), Query Frame = 0


Query: 47  PIEEVIAQGVRMWENSLVGQLIDVKMPYTVIYRLIEKIWGKLEMATITILENDLICFQFR 106
           P EEVI QG+++WENSLVGQLID K+PYTVI  L+EKIWGK+EM  ITILENDLICFQFR
Sbjct: 324 PPEEVIDQGIKVWENSLVGQLIDSKLPYTVIQHLVEKIWGKIEMPIITILENDLICFQFR 383

Query: 107 NLKYVEWILSRGPWHLGGKPMLLRKCTPDIVPESFVFDFVPVWIKLGRIPMELWIES 164
             K VEWILSRGPWHL  K MLLRK TP IVPE FVF+ VPVWI+LG++PMELW E+
Sbjct: 384 RSKSVEWILSRGPWHLDDKSMLLRKWTPGIVPEFFVFNSVPVWIRLGKLPMELWTEA 440

[Close]

BLAST of Chy4G079330 vs. NCBI nr
Match: KAA0042316.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa] >TYK15440.1 DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (531), Expect = 2.61e-62
Identity = 93/118 (78.81%), Postives = 106/118 (89.83%), Query Frame = 0


Query: 46  VPIEEVIAQGVRMWENSLVGQLIDVKMPYTVIYRLIEKIWGKLEMATITILENDLICFQF 105
           VP EEVI QG+R+WENSLVG+LID  +PY VI+RL+EKIWGK+EM TITILENDLICFQF
Sbjct: 190 VPPEEVIVQGIRVWENSLVGKLIDANLPYVVIHRLVEKIWGKIEMPTITILENDLICFQF 249

Query: 106 RNLKYVEWILSRGPWHLGGKPMLLRKCTPDIVPESFVFDFVPVWIKLGRIPMELWIES 163
           R  K +EWILSRGPWHLGGKPMLLRK TP IVPESF+F+ +PVWIKLGRIP+ELWIE+
Sbjct: 250 RWAKSLEWILSRGPWHLGGKPMLLRKWTPGIVPESFMFNSIPVWIKLGRIPIELWIEA 307

[Close]

BLAST of Chy4G079330 vs. NCBI nr
Match: TYK26656.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 201 bits (511), Expect = 7.42e-60
Identity = 91/118 (77.12%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 46  VPIEEVIAQGVRMWENSLVGQLIDVKMPYTVIYRLIEKIWGKLEMATITILENDLICFQF 105
           +P EEVI QG+R+WENSLVGQLID K+PY+VI RL+EKI GK+EM  ITILENDLICFQF
Sbjct: 177 IPTEEVIDQGIRVWENSLVGQLIDAKLPYSVIQRLVEKICGKIEMPIITILENDLICFQF 236

Query: 106 RNLKYVEWILSRGPWHLGGKPMLLRKCTPDIVPESFVFDFVPVWIKLGRIPMELWIES 163
           R  K VEWILSRGPWHLGGKPML RK TP IVPESFVF+ VPVWI LG++PMELW E+
Sbjct: 237 RRSKSVEWILSRGPWHLGGKPMLFRKWTPAIVPESFVFNSVPVWITLGKLPMELWTEA 294

[Close]

BLAST of Chy4G079330 vs. NCBI nr
Match: XP_031745056.1 (uncharacterized protein LOC116405235 [Cucumis sativus])

HSP 1 Score: 196 bits (498), Expect = 2.17e-59
Identity = 88/117 (75.21%), Postives = 103/117 (88.03%), Query Frame = 0


Query: 47  PIEEVIAQGVRMWENSLVGQLIDVKMPYTVIYRLIEKIWGKLEMATITILENDLICFQFR 106
           P EEVI+QGVR+ ENSLV QL+D K+PY VIYRLIEKIWG++EM TIT++EN LI FQF+
Sbjct: 29  PFEEVISQGVRVRENSLVSQLLDAKLPYLVIYRLIEKIWGRIEMPTITLMENGLIYFQFK 88

Query: 107 NLKYVEWILSRGPWHLGGKPMLLRKCTPDIVPESFVFDFVPVWIKLGRIPMELWIES 163
           +LK +EWILS GPWHLGGKPMLLRK TP IVPESFVF+ VPVWIKLGRIP+ELW ++
Sbjct: 89  HLKSIEWILSGGPWHLGGKPMLLRKWTPGIVPESFVFNSVPVWIKLGRIPLELWTDA 145

[Close]

BLAST of Chy4G079330 vs. NCBI nr
Match: XP_008460524.1 (PREDICTED: uncharacterized protein LOC103499323 [Cucumis melo])

HSP 1 Score: 201 bits (512), Expect = 3.67e-59
Identity = 91/118 (77.12%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 46  VPIEEVIAQGVRMWENSLVGQLIDVKMPYTVIYRLIEKIWGKLEMATITILENDLICFQF 105
           +P EEVI QG+R+WENSLVGQLID K+PY+VI RL+EKI GK+EM  ITILENDLICFQF
Sbjct: 261 IPTEEVIDQGIRVWENSLVGQLIDAKLPYSVIQRLVEKICGKIEMPIITILENDLICFQF 320

Query: 106 RNLKYVEWILSRGPWHLGGKPMLLRKCTPDIVPESFVFDFVPVWIKLGRIPMELWIES 163
           R  K VEWILSRGPWHLGGKPML RK TP IVPESFVF+ VPVWI LG++PMELW E+
Sbjct: 321 RRSKSVEWILSRGPWHLGGKPMLFRKWTPGIVPESFVFNSVPVWITLGKLPMELWTEA 378

[Close]

BLAST of Chy4G079330 vs. NCBI nr
Match: KAA0062320.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 201 bits (512), Expect = 3.54e-58
Identity = 91/118 (77.12%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 46  VPIEEVIAQGVRMWENSLVGQLIDVKMPYTVIYRLIEKIWGKLEMATITILENDLICFQF 105
           +P EEVI QG+R+WENSLVGQLID K+PY+VI RL+EKI GK+EM  ITILENDLICFQF
Sbjct: 380 IPTEEVIDQGIRVWENSLVGQLIDAKLPYSVIQRLVEKICGKIEMPIITILENDLICFQF 439

Query: 106 RNLKYVEWILSRGPWHLGGKPMLLRKCTPDIVPESFVFDFVPVWIKLGRIPMELWIES 163
           R  K VEWILSRGPWHLGGKPML RK TP IVPESFVF+ VPVWI LG++PMELW E+
Sbjct: 440 RRSKSVEWILSRGPWHLGGKPMLFRKWTPGIVPESFVFNSVPVWITLGKLPMELWTEA 497

The following BLAST results are available for this feature:

BLAST of Chy4G079330 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G079330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TK34	3.0e-50	78.81	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V507	4.8e-48	77.12	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S3CC83	4.8e-48	77.12	uncharacterized protein LOC103499323 OS=Cucumis melo OX=3656 GN=LOC103499323 PE=...	[more]
A0A5D3DSG9	6.3e-48	77.12	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3D5X6	1.0e-45	75.21	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Chy4G079330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042316.1	2.61e-62	78.81	DUF4283 domain-containing protein [Cucumis melo var. makuwa] >TYK15440.1 DUF4283...	[more]
TYK26656.1	7.42e-60	77.12	DUF4283 domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_031745056.1	2.17e-59	75.21	uncharacterized protein LOC116405235 [Cucumis sativus]	[more]
XP_008460524.1	3.67e-59	77.12	PREDICTED: uncharacterized protein LOC103499323 [Cucumis melo]	[more]
KAA0062320.1	3.54e-58	77.12	DUF4283 domain-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of Chy4G079330 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 54..161 e-value: 7.4E-20 score: 71.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G079330.1	Chy4G079330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity