Chy4G078870 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G078870
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH04: 17910982 .. 17911433 (+)
RNA-Seq Expression	Chy4G078870
Synteny	Chy4G078870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGTGGAACTCCGGATGGGTCCAGTTATTGTGCTGGTGCTGATGCTGATGCTGGTAGGGATGCTGGTGCTGGTGAGGTGGCGGGGGCGGGGGCTGGGGCTGGGGCTGGGGGTGGTGCTGAGGCTGGAAAGGAGGCTGGTGCTGCGTAGGGGGCGGAGGAGGAGGAGGAGGTGGGGGGGGATGGGGAGGGTACTGAGGGGGATAATTGGGGTGGACAAAAGGGGGCCCGGGATGGTGATTGGGGTATTGAACATAGGGATCAAACTGGTGATTGAAATTGGGTCGTCGGTCGTCGGAAGGCCACGACGGTGCGGAGGAAGAAGGGTGGTGCCTCTCCAGTTTTGCAGAAAAGGAATTGAACAAGAAGAAGAAAAAGAAGAGGAGGCCTGAGAATGATCAGGCGATTGAGGATGGAAGAGGAAGAGGAAGGGGGGTGATGAAAGAGAGATGA

mRNA sequence

GTTTGTGGAACTCCGGATGGGTCCAGTTATTGTGCTGGTGCTGATGCTGATGCTGGTAGGGATGCTGGTGCTGGTGAGGGTACTGAGGGGGATAATTGGGGTGGACAAAAGGGGGCCCGGGATGGTGATTGGGGTATTGAACATAGGGATCAAACTGGTGATTGAAATTGGGTCGTCGGTCGTCGGAAGGCCACGACGGTGCGGAGGAAGAAGGGTGGTGCCTCTCCAGTTTTGCAGAAAAGGAATTGAACAAGAAGAAGAAAAAGAAGAGGAGGCCTGAGAATGATCAGGCGATTGAGGATGGAAGAGGAAGAGGAAGGGGGGTGATGAAAGAGAGATGA

Coding sequence (CDS)

GTTTGTGGAACTCCGGATGGGTCCAGTTATTGTGCTGGTGCTGATGCTGATGCTGGTAGGGATGCTGGTGCTGGTGAGGGTACTGAGGGGGATAATTGGGGTGGACAAAAGGGGGCCCGGGATGGTGATTGGGGTATTGAACATAGGGATCAAACTGGTGATTGAAATTGGGTCGTCGGTCGTCGGAAGGCCACGACGGTGCGGAGGAAGAAGGGTGGTGCCTCTCCAGTTTTGCAGAAAAGGAATTGAACAAGAAGAAGAAAAAGAAGAGGAGGCCTGAGAATGATCAGGCGATTGAGGATGGAAGAGGAAGAGGAAGGGGGGTGATGAAAGAGAGATGA

Protein sequence

VCGTPDGSSYCAGADADAGRDAGAGEGTEGDNWGGQKGARDGDWGIEHRDQTGD*NWVVGRRKATTVRRKKGGASPVLQKRN*TRRRKRRGGLRMIRRLRMEEEEEGG**KRDX

Homology

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BLAST of Chy4G078870 vs. NCBI nr
Match: KAE8650755.1 (hypothetical protein Csa_023869, partial [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.70e-15
Identity = 63/116 (54.31%), Postives = 70/116 (60.34%), Query Frame = 0


Query: 2   CGTPDGSSYCAGADADAGRDAGAGEGTEGDNWGGQKGARDG----DWGIEHRDQTGD*NW 61
           CGTPDGSSYCAGADADAGR  GAGE TEGDNWGGQKGA       + GI+   + G  + 
Sbjct: 2   CGTPDGSSYCAGADADAGR--GAGERTEGDNWGGQKGAGMVIGVLNIGIKLVIEIG--SS 61

Query: 62  VVGRRKATTVRR-------KKGGASPVLQKRN*TRRRKRRGGLRMIRRLRMEEEEE 106
           VVGR +    RR       +KG      +K          GGLRMIRRLRMEEEEE
Sbjct: 62  VVGRPRRCGGRRVVPLQFCRKGMEQEEEEK---------GGGLRMIRRLRMEEEEE 104

The following BLAST results are available for this feature:

BLAST of Chy4G078870 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G078870 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G078870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650755.1	1.70e-15	54.31	hypothetical protein Csa_023869, partial [Cucumis sativus]	[more]

BLAST of Chy4G078870 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G078870.1	Chy4G078870.1	mRNA