Chy4G077890 (gene) Cucumber (hystrix) v1

Overview
NameChy4G077890
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrotransposon protein
LocationchrH04: 16062890 .. 16063372 (-)
RNA-Seq ExpressionChy4G077890
SyntenyChy4G077890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAGAGTCATTTGTCGATGTGGGGTCGAATGTGCCTGTAGGGTACAAAAAAATTTCCGCTGACAATGGAAATGATTCGGAGATCCCTATGATGTATAATCAGGGACTAGATATGTCGCCTAACGACATAATGGGCACACGACCTGGTCGCTCAAGTGAGAGTATGAATGCTTAAAGTGAAAGCAAGACGAAGCAGAAAGGCCAGACGGCTGAAACTGTGAAAATCATTCGCAATGCAATGGAATATGAGAATGACCATTTGAAGGCCATTGTAGAATGGCCGAATGTACAATGTCAAGAAGAGAAGGCCTCCTGTGCAGAATTTGTGAAACAGTTGTAGGGAATCAATGAACTAAGCACCCGCGATAGGGTACACCTTATGCGGATAATAATGTGCAATGTCAATGACATGAAATCATTCTTGGAGATACCCGACGAGCTTAAATTAGACTACTACACGGTCATGCTCGAAGATAATGCTTAA

mRNA sequence

GTAGAGTCATTTGTCGATGTGGGGTCGAATGTGCCTGTAGGGTACAAAAAAATTTCCGCTGACAATGGAAATGATTCGGAGATCCCTATGATGTATAATCAGGGACTAGATATGTCGCCTAACGACATAATGGGCACACGACCTGGTCGCTCAAGTGAGAGTATGAATGCTTAAAGTGAAAGCAAGACGAAGCAGAAAGGCCAGACGGCTGAAACTGTGAAAATCATTCGCAATGCAATGGAATATGAGAATGACCATTTGAAGGCCATTGTAGAATGGCCGAATGTACAATGTCAAGAAGAGAAGGCCTCCTGTGCAGAATTTGTGAAACAGTTGTAGGGAATCAATGAACTAAGCACCCGCGATAGGGTACACCTTATGCGGATAATAATGTGCAATGTCAATGACATGAAATCATTCTTGGAGATACCCGACGAGCTTAAATTAGACTACTACACGGTCATGCTCGAAGATAATGCTTAA

Coding sequence (CDS)

GTAGAGTCATTTGTCGATGTGGGGTCGAATGTGCCTGTAGGGTACAAAAAAATTTCCGCTGACAATGGAAATGATTCGGAGATCCCTATGATGTATAATCAGGGACTAGATATGTCGCCTAACGACATAATGGGCACACGACCTGGTCGCTCAAGTGAGAGTATGAATGCTTAAAGTGAAAGCAAGACGAAGCAGAAAGGCCAGACGGCTGAAACTGTGAAAATCATTCGCAATGCAATGGAATATGAGAATGACCATTTGAAGGCCATTGTAGAATGGCCGAATGTACAATGTCAAGAAGAGAAGGCCTCCTGTGCAGAATTTGTGAAACAGTTGTAGGGAATCAATGAACTAAGCACCCGCGATAGGGTACACCTTATGCGGATAATAATGTGCAATGTCAATGACATGAAATCATTCTTGGAGATACCCGACGAGCTTAAATTAGACTACTACACGGTCATGCTCGAAGATAATGCTTAA

Protein sequence

VESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA*
Homology
BLAST of Chy4G077890 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.4e-46
Identity = 100/160 (62.50%), Postives = 120/160 (75.00%), Query Frame = 0

Query: 1   VESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SE 60
           VE+F DVGSN P GY+  SAD+GND EIPMMY+QG+DM  +DIMGTRP RS+E     S 
Sbjct: 5   VETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSG 64

Query: 61  SKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELST 120
           SK KQ GQ  ET++IIRN ME+ ND LKAIVEW NVQ Q+  A   E V+QL  I ELS 
Sbjct: 65  SKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSR 124

Query: 121 RDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 161
            DRV  M+I+MCNV+DMK+FL+I DELKLDY T++ +DNA
Sbjct: 125 YDRVRSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 164

BLAST of Chy4G077890 vs. ExPASy TrEMBL
Match: A0A5D3CL79 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00920 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.6e-35
Identity = 82/144 (56.94%), Postives = 102/144 (70.83%), Query Frame = 0

Query: 4   FVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SESKT 63
           FVDVGSNVP GY+    D  ND EIP MY++GLDMS   I GTR G ++E     SESK 
Sbjct: 8   FVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRAGLSESKK 67

Query: 64  KQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDR 123
           K+ GQ+ ETV+IIRN MEY ND LKAI EWPNVQCQ+   +  EFV+QL GI ELS  D+
Sbjct: 68  KKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGILELSRLDK 127

Query: 124 VHLMRIIMCNVNDMKSFLEIPDEL 148
            H + ++M NVNDMK+ L++ D++
Sbjct: 128 AHCICLLMHNVNDMKASLDVSDDM 151

BLAST of Chy4G077890 vs. ExPASy TrEMBL
Match: A0A5A7UXH8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005580 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 9.6e-33
Identity = 75/158 (47.47%), Postives = 104/158 (65.82%), Query Frame = 0

Query: 2   ESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SES 61
           ESF D+GSN P GY    AD   D++ P MY+ GL+MSP+D+M TR  R SE  N  + S
Sbjct: 108 ESFADIGSNHPAGYDAFPADTTPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSNGS 167

Query: 62  KTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTR 121
           K K+ G   ++  I+R A+EYEN+ L  I EWP +Q Q+   +  E V+QL  I EL+  
Sbjct: 168 KRKRPGHATDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEAIPELTLM 227

Query: 122 DRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDN 160
           DR  LMRI+M NV+DMK+FLE+ D +K  YY+++L++N
Sbjct: 228 DRCRLMRILMRNVDDMKAFLEVSDNMKYPYYSIILQEN 265

BLAST of Chy4G077890 vs. ExPASy TrEMBL
Match: A0A5D3E5C1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00410 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 76/159 (47.80%), Postives = 103/159 (64.78%), Query Frame = 0

Query: 1   VESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SE 60
           VESF D+GSN P GY   +AD   D+    MY+  L+MSP+D+M TR  R SE  N  S 
Sbjct: 138 VESFADIGSNDPAGYDAFAADAAPDTNFSPMYSPRLNMSPDDLMETRTARVSERRNVSSG 197

Query: 61  SKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELST 120
           SK K+ G   ++  I+R A+EY N  L  I EWP +QCQ+   +  E V+QL  I EL+ 
Sbjct: 198 SKQKRTGHATDSGDIVRTAIEYGNKQLHRIAEWPILQCQDATQTRQEIVRQLEAIPELTL 257

Query: 121 RDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDN 160
            DR HLMRI+M NV+DMK+FLE+PD +K  Y +++L++N
Sbjct: 258 MDRCHLMRILMRNVDDMKAFLEVPDNMKYPYSSIILQEN 296

BLAST of Chy4G077890 vs. ExPASy TrEMBL
Match: A0A5A7VIQ2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G00470 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 90/160 (56.25%), Postives = 106/160 (66.25%), Query Frame = 0

Query: 1   VESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SE 60
           VE+FVDV SNV   Y+   A++GNDSEIPM+Y                G  SE  NA S 
Sbjct: 12  VETFVDVRSNVFEVYEGFPANDGNDSEIPMIY----------------GHLSEGRNASSR 71

Query: 61  SKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELST 120
           SK K   QT ETVKII NA+EY N  LKAI +  NVQ Q + AS AE + QL GI +LST
Sbjct: 72  SKRKWGDQTTETVKIICNAIEYTNGQLKAIAKRSNVQRQADDASRAEVMSQLQGIPKLST 131

Query: 121 RDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 161
           RDRV L+ IIM NV++M++FLE+PDELKLDY T MLEDNA
Sbjct: 132 RDRVRLLWIIMHNVHNMRAFLEVPDELKLDYCTTMLEDNA 155

BLAST of Chy4G077890 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 192 bits (488), Expect = 1.45e-59
Identity = 100/160 (62.50%), Postives = 120/160 (75.00%), Query Frame = 0

Query: 1   VESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SE 60
           VE+F DVGSN P GY+  SAD+GND EIPMMY+QG+DM  +DIMGTRP RS+E     S 
Sbjct: 5   VETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSG 64

Query: 61  SKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELST 120
           SK KQ GQ  ET++IIRN ME+ ND LKAIVEW NVQ Q+  A   E V+QL  I ELS 
Sbjct: 65  SKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSR 124

Query: 121 RDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 160
            DRV  M+I+MCNV+DMK+FL+I DELKLDY T++ +DNA
Sbjct: 125 YDRVRSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 164

BLAST of Chy4G077890 vs. NCBI nr
Match: TYK11924.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (392), Expect = 1.29e-44
Identity = 82/144 (56.94%), Postives = 102/144 (70.83%), Query Frame = 0

Query: 4   FVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SESKT 63
           FVDVGSNVP GY+    D  ND EIP MY++GLDMS   I GTR G ++E     SESK 
Sbjct: 8   FVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRAGLSESKK 67

Query: 64  KQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDR 123
           K+ GQ+ ETV+IIRN MEY ND LKAI EWPNVQCQ+   +  EFV+QL GI ELS  D+
Sbjct: 68  KKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGILELSRLDK 127

Query: 124 VHLMRIIMCNVNDMKSFLEIPDEL 147
            H + ++M NVNDMK+ L++ D++
Sbjct: 128 AHCICLLMHNVNDMKASLDVSDDM 151

BLAST of Chy4G077890 vs. NCBI nr
Match: KAA0065601.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (372), Expect = 4.53e-42
Identity = 90/160 (56.25%), Postives = 106/160 (66.25%), Query Frame = 0

Query: 1   VESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SE 60
           VE+FVDV SNV   Y+   A++GNDSEIPM+Y                G  SE  NA S 
Sbjct: 12  VETFVDVRSNVFEVYEGFPANDGNDSEIPMIY----------------GHLSEGRNASSR 71

Query: 61  SKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELST 120
           SK K   QT ETVKII NA+EY N  LKAI +  NVQ Q + AS AE + QL GI +LST
Sbjct: 72  SKRKWGDQTTETVKIICNAIEYTNGQLKAIAKRSNVQRQADDASRAEVMSQLQGIPKLST 131

Query: 121 RDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 160
           RDRV L+ IIM NV++M++FLE+PDELKLDY T MLEDNA
Sbjct: 132 RDRVRLLWIIMHNVHNMRAFLEVPDELKLDYCTTMLEDNA 155

BLAST of Chy4G077890 vs. NCBI nr
Match: TYK07171.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (372), Expect = 4.53e-42
Identity = 90/160 (56.25%), Postives = 106/160 (66.25%), Query Frame = 0

Query: 1   VESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SE 60
           VE+FVDV SNV   Y+   A++GNDSEIPM+Y                G  SE  NA S 
Sbjct: 12  VETFVDVRSNVFEVYEGFPANDGNDSEIPMIY----------------GHLSEGRNASSR 71

Query: 61  SKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELST 120
           SK K   QT ETVKII NA+EY N  LKAI +  NVQ Q + AS AE + QL GI +LST
Sbjct: 72  SKRKWGDQTTETVKIICNAIEYTNGQLKAIAKRSNVQRQADDASRAEVMSQLQGIPKLST 131

Query: 121 RDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 160
           RDRV L+ IIM NV++M++FLE+PDELKLDY T MLEDNA
Sbjct: 132 RDRVRLLWIIMHNVHNMRAFLEVPDELKLDYCTTMLEDNA 155

BLAST of Chy4G077890 vs. NCBI nr
Match: KAA0060663.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (372), Expect = 1.08e-40
Identity = 75/158 (47.47%), Postives = 104/158 (65.82%), Query Frame = 0

Query: 2   ESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SES 61
           ESF D+GSN P GY    AD   D++ P MY+ GL+MSP+D+M TR  R SE  N  + S
Sbjct: 108 ESFADIGSNHPAGYDAFPADTTPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSNGS 167

Query: 62  KTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTR 121
           K K+ G   ++  I+R A+EYEN+ L  I EWP +Q Q+   +  E V+QL  I EL+  
Sbjct: 168 KRKRPGHATDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEAIPELTLM 227

Query: 122 DRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDN 159
           DR  LMRI+M NV+DMK+FLE+ D +K  YY+++L++N
Sbjct: 228 DRCRLMRILMRNVDDMKAFLEVSDNMKYPYYSIILQEN 265

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V4693.4e-4662.50Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CL794.6e-3556.94Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UXH89.6e-3347.47Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3E5C11.2e-3247.80Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VIQ21.2e-3256.25Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0060529.11.45e-5962.50retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... [more]
TYK11924.11.29e-4456.94retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065601.14.53e-4256.25retrotransposon protein [Cucumis melo var. makuwa][more]
TYK07171.14.53e-4256.25retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0060663.11.08e-4047.47retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G077890.1Chy4G077890.1mRNA