Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAGAGTCATTTGTCGATGTGGGGTCGAATGTGCCTGTAGGGTACAAAAAAATTTCCGCTGACAATGGAAATGATTCGGAGATCCCTATGATGTATAATCAGGGACTAGATATGTCGCCTAACGACATAATGGGCACACGACCTGGTCGCTCAAGTGAGAGTATGAATGCTTAAAGTGAAAGCAAGACGAAGCAGAAAGGCCAGACGGCTGAAACTGTGAAAATCATTCGCAATGCAATGGAATATGAGAATGACCATTTGAAGGCCATTGTAGAATGGCCGAATGTACAATGTCAAGAAGAGAAGGCCTCCTGTGCAGAATTTGTGAAACAGTTGTAGGGAATCAATGAACTAAGCACCCGCGATAGGGTACACCTTATGCGGATAATAATGTGCAATGTCAATGACATGAAATCATTCTTGGAGATACCCGACGAGCTTAAATTAGACTACTACACGGTCATGCTCGAAGATAATGCTTAA
mRNA sequence
GTAGAGTCATTTGTCGATGTGGGGTCGAATGTGCCTGTAGGGTACAAAAAAATTTCCGCTGACAATGGAAATGATTCGGAGATCCCTATGATGTATAATCAGGGACTAGATATGTCGCCTAACGACATAATGGGCACACGACCTGGTCGCTCAAGTGAGAGTATGAATGCTTAAAGTGAAAGCAAGACGAAGCAGAAAGGCCAGACGGCTGAAACTGTGAAAATCATTCGCAATGCAATGGAATATGAGAATGACCATTTGAAGGCCATTGTAGAATGGCCGAATGTACAATGTCAAGAAGAGAAGGCCTCCTGTGCAGAATTTGTGAAACAGTTGTAGGGAATCAATGAACTAAGCACCCGCGATAGGGTACACCTTATGCGGATAATAATGTGCAATGTCAATGACATGAAATCATTCTTGGAGATACCCGACGAGCTTAAATTAGACTACTACACGGTCATGCTCGAAGATAATGCTTAA
Coding sequence (CDS)
GTAGAGTCATTTGTCGATGTGGGGTCGAATGTGCCTGTAGGGTACAAAAAAATTTCCGCTGACAATGGAAATGATTCGGAGATCCCTATGATGTATAATCAGGGACTAGATATGTCGCCTAACGACATAATGGGCACACGACCTGGTCGCTCAAGTGAGAGTATGAATGCTTAAAGTGAAAGCAAGACGAAGCAGAAAGGCCAGACGGCTGAAACTGTGAAAATCATTCGCAATGCAATGGAATATGAGAATGACCATTTGAAGGCCATTGTAGAATGGCCGAATGTACAATGTCAAGAAGAGAAGGCCTCCTGTGCAGAATTTGTGAAACAGTTGTAGGGAATCAATGAACTAAGCACCCGCGATAGGGTACACCTTATGCGGATAATAATGTGCAATGTCAATGACATGAAATCATTCTTGGAGATACCCGACGAGCTTAAATTAGACTACTACACGGTCATGCTCGAAGATAATGCTTAA
Protein sequence
VESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA*
Homology
BLAST of Chy4G077890 vs. ExPASy TrEMBL
Match:
A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)
HSP 1 Score: 194.5 bits (493), Expect = 3.4e-46
Identity = 100/160 (62.50%), Postives = 120/160 (75.00%), Query Frame = 0
Query: 1 VESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SE 60
VE+F DVGSN P GY+ SAD+GND EIPMMY+QG+DM +DIMGTRP RS+E S
Sbjct: 5 VETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSG 64
Query: 61 SKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELST 120
SK KQ GQ ET++IIRN ME+ ND LKAIVEW NVQ Q+ A E V+QL I ELS
Sbjct: 65 SKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSR 124
Query: 121 RDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 161
DRV M+I+MCNV+DMK+FL+I DELKLDY T++ +DNA
Sbjct: 125 YDRVRSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 164
BLAST of Chy4G077890 vs. ExPASy TrEMBL
Match:
A0A5D3CL79 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00920 PE=4 SV=1)
HSP 1 Score: 157.5 bits (397), Expect = 4.6e-35
Identity = 82/144 (56.94%), Postives = 102/144 (70.83%), Query Frame = 0
Query: 4 FVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SESKT 63
FVDVGSNVP GY+ D ND EIP MY++GLDMS I GTR G ++E SESK
Sbjct: 8 FVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRAGLSESKK 67
Query: 64 KQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDR 123
K+ GQ+ ETV+IIRN MEY ND LKAI EWPNVQCQ+ + EFV+QL GI ELS D+
Sbjct: 68 KKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGILELSRLDK 127
Query: 124 VHLMRIIMCNVNDMKSFLEIPDEL 148
H + ++M NVNDMK+ L++ D++
Sbjct: 128 AHCICLLMHNVNDMKASLDVSDDM 151
BLAST of Chy4G077890 vs. ExPASy TrEMBL
Match:
A0A5A7UXH8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005580 PE=4 SV=1)
HSP 1 Score: 149.8 bits (377), Expect = 9.6e-33
Identity = 75/158 (47.47%), Postives = 104/158 (65.82%), Query Frame = 0
Query: 2 ESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SES 61
ESF D+GSN P GY AD D++ P MY+ GL+MSP+D+M TR R SE N + S
Sbjct: 108 ESFADIGSNHPAGYDAFPADTTPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSNGS 167
Query: 62 KTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTR 121
K K+ G ++ I+R A+EYEN+ L I EWP +Q Q+ + E V+QL I EL+
Sbjct: 168 KRKRPGHATDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEAIPELTLM 227
Query: 122 DRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDN 160
DR LMRI+M NV+DMK+FLE+ D +K YY+++L++N
Sbjct: 228 DRCRLMRILMRNVDDMKAFLEVSDNMKYPYYSIILQEN 265
BLAST of Chy4G077890 vs. ExPASy TrEMBL
Match:
A0A5D3E5C1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00410 PE=4 SV=1)
HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 76/159 (47.80%), Postives = 103/159 (64.78%), Query Frame = 0
Query: 1 VESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SE 60
VESF D+GSN P GY +AD D+ MY+ L+MSP+D+M TR R SE N S
Sbjct: 138 VESFADIGSNDPAGYDAFAADAAPDTNFSPMYSPRLNMSPDDLMETRTARVSERRNVSSG 197
Query: 61 SKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELST 120
SK K+ G ++ I+R A+EY N L I EWP +QCQ+ + E V+QL I EL+
Sbjct: 198 SKQKRTGHATDSGDIVRTAIEYGNKQLHRIAEWPILQCQDATQTRQEIVRQLEAIPELTL 257
Query: 121 RDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDN 160
DR HLMRI+M NV+DMK+FLE+PD +K Y +++L++N
Sbjct: 258 MDRCHLMRILMRNVDDMKAFLEVPDNMKYPYSSIILQEN 296
BLAST of Chy4G077890 vs. ExPASy TrEMBL
Match:
A0A5A7VIQ2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G00470 PE=4 SV=1)
HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 90/160 (56.25%), Postives = 106/160 (66.25%), Query Frame = 0
Query: 1 VESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SE 60
VE+FVDV SNV Y+ A++GNDSEIPM+Y G SE NA S
Sbjct: 12 VETFVDVRSNVFEVYEGFPANDGNDSEIPMIY----------------GHLSEGRNASSR 71
Query: 61 SKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELST 120
SK K QT ETVKII NA+EY N LKAI + NVQ Q + AS AE + QL GI +LST
Sbjct: 72 SKRKWGDQTTETVKIICNAIEYTNGQLKAIAKRSNVQRQADDASRAEVMSQLQGIPKLST 131
Query: 121 RDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 161
RDRV L+ IIM NV++M++FLE+PDELKLDY T MLEDNA
Sbjct: 132 RDRVRLLWIIMHNVHNMRAFLEVPDELKLDYCTTMLEDNA 155
BLAST of Chy4G077890 vs. NCBI nr
Match:
KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 192 bits (488), Expect = 1.45e-59
Identity = 100/160 (62.50%), Postives = 120/160 (75.00%), Query Frame = 0
Query: 1 VESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SE 60
VE+F DVGSN P GY+ SAD+GND EIPMMY+QG+DM +DIMGTRP RS+E S
Sbjct: 5 VETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSG 64
Query: 61 SKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELST 120
SK KQ GQ ET++IIRN ME+ ND LKAIVEW NVQ Q+ A E V+QL I ELS
Sbjct: 65 SKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSR 124
Query: 121 RDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 160
DRV M+I+MCNV+DMK+FL+I DELKLDY T++ +DNA
Sbjct: 125 YDRVRSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 164
BLAST of Chy4G077890 vs. NCBI nr
Match:
TYK11924.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 155 bits (392), Expect = 1.29e-44
Identity = 82/144 (56.94%), Postives = 102/144 (70.83%), Query Frame = 0
Query: 4 FVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SESKT 63
FVDVGSNVP GY+ D ND EIP MY++GLDMS I GTR G ++E SESK
Sbjct: 8 FVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRAGLSESKK 67
Query: 64 KQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDR 123
K+ GQ+ ETV+IIRN MEY ND LKAI EWPNVQCQ+ + EFV+QL GI ELS D+
Sbjct: 68 KKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGILELSRLDK 127
Query: 124 VHLMRIIMCNVNDMKSFLEIPDEL 147
H + ++M NVNDMK+ L++ D++
Sbjct: 128 AHCICLLMHNVNDMKASLDVSDDM 151
BLAST of Chy4G077890 vs. NCBI nr
Match:
KAA0065601.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 147 bits (372), Expect = 4.53e-42
Identity = 90/160 (56.25%), Postives = 106/160 (66.25%), Query Frame = 0
Query: 1 VESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SE 60
VE+FVDV SNV Y+ A++GNDSEIPM+Y G SE NA S
Sbjct: 12 VETFVDVRSNVFEVYEGFPANDGNDSEIPMIY----------------GHLSEGRNASSR 71
Query: 61 SKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELST 120
SK K QT ETVKII NA+EY N LKAI + NVQ Q + AS AE + QL GI +LST
Sbjct: 72 SKRKWGDQTTETVKIICNAIEYTNGQLKAIAKRSNVQRQADDASRAEVMSQLQGIPKLST 131
Query: 121 RDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 160
RDRV L+ IIM NV++M++FLE+PDELKLDY T MLEDNA
Sbjct: 132 RDRVRLLWIIMHNVHNMRAFLEVPDELKLDYCTTMLEDNA 155
BLAST of Chy4G077890 vs. NCBI nr
Match:
TYK07171.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 147 bits (372), Expect = 4.53e-42
Identity = 90/160 (56.25%), Postives = 106/160 (66.25%), Query Frame = 0
Query: 1 VESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SE 60
VE+FVDV SNV Y+ A++GNDSEIPM+Y G SE NA S
Sbjct: 12 VETFVDVRSNVFEVYEGFPANDGNDSEIPMIY----------------GHLSEGRNASSR 71
Query: 61 SKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELST 120
SK K QT ETVKII NA+EY N LKAI + NVQ Q + AS AE + QL GI +LST
Sbjct: 72 SKRKWGDQTTETVKIICNAIEYTNGQLKAIAKRSNVQRQADDASRAEVMSQLQGIPKLST 131
Query: 121 RDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 160
RDRV L+ IIM NV++M++FLE+PDELKLDY T MLEDNA
Sbjct: 132 RDRVRLLWIIMHNVHNMRAFLEVPDELKLDYCTTMLEDNA 155
BLAST of Chy4G077890 vs. NCBI nr
Match:
KAA0060663.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 147 bits (372), Expect = 1.08e-40
Identity = 75/158 (47.47%), Postives = 104/158 (65.82%), Query Frame = 0
Query: 2 ESFVDVGSNVPVGYKKISADNGNDSEIPMMYNQGLDMSPNDIMGTRPGRSSESMNA*SES 61
ESF D+GSN P GY AD D++ P MY+ GL+MSP+D+M TR R SE N + S
Sbjct: 108 ESFADIGSNHPAGYDAFPADTTPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSNGS 167
Query: 62 KTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTR 121
K K+ G ++ I+R A+EYEN+ L I EWP +Q Q+ + E V+QL I EL+
Sbjct: 168 KRKRPGHATDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEAIPELTLM 227
Query: 122 DRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDN 159
DR LMRI+M NV+DMK+FLE+ D +K YY+++L++N
Sbjct: 228 DRCRLMRILMRNVDDMKAFLEVSDNMKYPYYSIILQEN 265
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V469 | 3.4e-46 | 62.50 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3CL79 | 4.6e-35 | 56.94 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7UXH8 | 9.6e-33 | 47.47 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3E5C1 | 1.2e-32 | 47.80 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VIQ2 | 1.2e-32 | 56.25 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0060529.1 | 1.45e-59 | 62.50 | retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... | [more] |
TYK11924.1 | 1.29e-44 | 56.94 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0065601.1 | 4.53e-42 | 56.25 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK07171.1 | 4.53e-42 | 56.25 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0060663.1 | 1.08e-40 | 47.47 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |