Chy4G075900 (gene) Cucumber (hystrix) v1

Overview
NameChy4G075900
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionU6 snRNA-associated Sm-like protein LSm5
LocationchrH04: 11613664 .. 11617394 (+)
RNA-Seq ExpressionChy4G075900
SyntenyChy4G075900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGCAATCCTTCACAGTTACTACCGTCGGGTTCGTTTCTGCTTCTCCTTCGTTTTATATTTCTTATTACCCATCCTATTTTGCTGCAAACGAACTCTTATTTACTGGGTTTCTTGTTGGGATTTTGCAGAGTTAATCGACCGATGTATTGGGTCTAAAATATGGGTAATAATGAAGGGCGACAAAGAGCTCGTTGGAACTCTCAGAGGATTTGATGTTTATGTCAACATGGTTCTTGAGGATGTTACTGAATAGTAAGAGCCTCTGCCAAGATCTATACTCATTTTTCTTTGCTTTGCTCATTTGGACTGTATATGTTTTGTATTTTGCGTTTTTTTCTTCAGTATCTTCTGTATGTTCACTTTCTTTTACATAGTGTTTGATGTGCCTGTTTCTGCGTTGGAGAATGTGAGGCGAATAGAAAAATGTATTAGGCTTAGTGGTGTACTTGTCTGTATTTAAAGGATTGAAAAACATGATTTGAGCGACAGAGAAAGTTTTGAAAGACCAATTTGAATAATTGATTTATGCAATTTCATCGAATCCCTTCTGTTCTTTTCCAATCTTAGGAGTGGGGTTGGAGGTTAGCTTTGGAGAGATTTTGAGTTGAGGTTTAAAAAACCCCTTTGTTCAACTTTTCAAAGGGAACTGGACAGTGGAGGTTTCTTCAGAAGTTGAAGAAAGTGATCGATAATCTGTGCCCTGTTGACATAGTAGGAGAAGAGTTAATAAGAGTCAAGAGAGGAGCGACCTTATCCATGCGCCATTTCTGCTGAGATTTTGTCCATGCTTGCGCTGTTTTCTCCAAATCTCTCATAACGTTGAAGATAAATGTTGGTTTAAATGTCCAGGAAGTGCATTGTTGTTGATACAGTTCTACTTTTATACAGATATAACTTTTCTTTCTGGTACTTATTCTCAACAAATTGGGGCCTGTGAACTGGTACTTTTCGAACATCTCTCATTACAAACCTAGGGTATTAGTGGAGGGTTGGGTTTGGAGTAACATTAGAAGGGTGGAGTATTAGTTCTCATTATTGGTAGGCTGTGGAGAGGATTTGAGCTACAAGAGGCCTTAGACAATAGACAGGGTCATCCATTATCTCTCTCTCTCTTCTTGCTTGCGATGGATACACTTAGCAAGATTGTCTTGAGAGGGTTGGAAGGCAGGATCAGATGGGGCTTTAGAAGTGGACCAAGATAGAGTTTCTTTGTATCATCTTCAATTTGCTAATAATGCTACCTTTCTGGAGGAAATTTTTTTCCTTGTTTTGGAACATATCTTCTAAACATTATCCAGGCTTAAACTTAATAGGGAAAAATGTTAAACTATGGATTTCACTGTGACCTAAGTAAGATGAGAAGTTGAGCTAACTTGATGGGCTGTGAGATTGAGTCTTTCTTTGCTTCCTACCTTGTTCTTCCTCTTAGCCATAATTAGAAATAGTCCTGTTATTTGCAAAATTTGTAATTGGAAGAGAAGCTTTTTCTTTAAGGGTGGAAGATTGACCCTCATAGCTCAATATTGTATAGAATTCTGATTTATTTCTTTTTCCTTTTTAGAGTCCAGTTTTCTATTTGCTATATGCTAGAGCAGCTTATGGGGGATTTGAGGTTGATGAGGAGCAAAGTACGCAGTGTGTGAGTTGGCAGAGGGTGGGGAAGGTTGTGAAACTTTGGGGAGTTAGAGTTGGGGAATTTGAAGGCTCATAACCAAGCTTTCCAAGATAATGGCTCTAGAGGCTCCCTCTTGAGTCTACTACTCTTTGGCATAGGATTATAGGGAGTTAGCACAGTGCTCATCTGTTAGAGTGGATGTTAGGTGGGGTCAAAGACACAAAAATCCTCGAAAATTAATTTCTAGTGAGCTTCGTTCCATTTCCTTCTTGGTCTAATGCTTTGTGGGTGATGCTTATTTTTTGGGATTATTAATGGGTTGGGGATTGTCTCCTTTTCCCTTCTTTTCCCTTCATTTCCTTGTTTATATCATTTATCCTCCACAAGAAATTGCTTGATGGTTGATGTTTCACCAGGGAGCTTCCCTTGTTATAGCTTGGTTTTTGTTGTTCAATGTTTGACAGGAAAATGATAGACATCTTGGCCCTCTTATCTTTGATTGTGGAGGTTAACGCCACTGAGGTTTTTTCTTGTAGCTTGTTTTTTAGTGCTTGTTGAATCCCTCTCCGGCTAGCGAGTATGTTTTTGTCAAGTACAGGGAAGGTGAAATATGTCTACTTTGGTTTGGCTTTTTAATTTCCTTGTTTGTTGAAGGGTGAAAGAAGATCTTGATCATATTATCTGGAGTTGCAACTTTTCTGCGTGGAAACTCTTTTTCTTGATGTGTTGGACTCATAATGTGCTAGACAGGGAGGTTACAAGGAGATGATTGAGGAGTTCCTTCTTCATGATAGAAGCGAATGTTTGGCAAGTAGAGGTTTATGCTGTTTGTGGGTTTATGGACGAGAAGCAATAGGACCTTCACAGAGGTCGAAGGTCTAGAGGCACCATTGTGACATTTAGGCCTTTTTCAGGTTTTATGTTTCTCTTTGGAAGTCGGTGCTGATGGCTTCTTGTATTTACTCATTAGGTCTGGGGTTGGTACATTGATAGAACACCAATAAGATGTGTTCTTATTCAATTGATATAAACCTCACTATTACAAAGAAGAATTGATGAATATCAATCATGAGATGAAAATGCAGAAAGAAACTAATAACAAGTAAAATACTACCCTCCCTGCCTATCCTCTCTCTCAAGAAAGGTGCTGTAAAACTACCCACAAACTGATCTCCCCTTTCTTCCCTCACCAACTTCCTATTTATAACCATGTAACTGCCTATATATCTAATTACCCTTATACCCCTGTCTTATACTAATCTAGGTATCTAACAGACATTTGATGTGTATTGTGCTTTATCTTTTTCTTTTCTAGTTGTGGAGCTACCATTGTTGTGCTTTATCTTTTCCTTTTCTAGTTGTGAAGCTACCATTTTCTTGCTTGATTTTCACTTCTATGGTCTGGTTATGAATATATATGTGAAATGCAAACTTCATGACAGATTGGTGAGACCATAGATTTTAGAATGTGATTATCGTGTTATTTTAATCAATCCATCGTTTAGACTTCTCTCTCATCTTTTGTGTGATGTAACCATAATTTTTCTCATTAAACATGTGAATTGAATTGAAATACCAATAGCTCCTGAGAACAGGAGTAACGATTTGGTATGTACCCTAGGAGTACTATAAAACTTTGTTACATTGTCGTAGAAGTAATGTTTTGGTATGTGCACTAGAAGTAAGCTTTATATATTTTTTCAGCTCATTTCTGCTGTTTAGTACTCGGTTAGATGATTCATTTCATTCTATTACGGTGTGGCTCCATAAAGCCTACGGTTAAATCATTATTTACAACCACATGATTGGCCTTCGAGGAGACTCTAGATGGAGCAAATATCACCATTGATGACTGTCATTTCTGCGCTACCAATCAAAATATTGAGCTGTTCTATTGAGTCTGAATTTCCTATTTTGGCACATCTTTTGTGCACGTGGCAGGCTTGAGTTGCTGTCTTTTTATGAACCTAACGATTCTTTATTTTTTTCAAATCACGATCTACTATATGGTTTGACTCTTTCCATATTACATTGTAGTGAGATCACTGCTGAGGGGAGGCGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATT

mRNA sequence

ATGGCTAGCAATCCTTCACAGTTACTACCGTCGGAGTTAATCGACCGATGTATTGGGTCTAAAATATGGGTAATAATGAAGGGCGACAAAGAGCTCGTTGGAACTCTCAGAGGATTTGATGTTTATGTCAACATGGTTCTTGAGGATGTTACTGAATATGAGATCACTGCTGAGGGGAGGCGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATT

Coding sequence (CDS)

ATGGCTAGCAATCCTTCACAGTTACTACCGTCGGAGTTAATCGACCGATGTATTGGGTCTAAAATATGGGTAATAATGAAGGGCGACAAAGAGCTCGTTGGAACTCTCAGAGGATTTGATGTTTATGTCAACATGGTTCTTGAGGATGTTACTGAATATGAGATCACTGCTGAGGGGAGGCGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATT

Protein sequence

MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
Homology
[Close]
BLAST of Chy4G075900 vs. ExPASy Swiss-Prot
Match: Q9FKB0 (Sm-like protein LSM5 OS=Arabidopsis thaliana OX=3702 GN=LSM5 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.6e-36
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAI 78
          R+TKLDQILLNGNNIAI
Sbjct: 61 RVTKLDQILLNGNNIAI 77

[Close]
BLAST of Chy4G075900 vs. ExPASy Swiss-Prot
Match: Q2HJH0 (U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus OX=9913 GN=LSM5 PE=3 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 5.6e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 3  SNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRI 62
          +NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRI
Sbjct: 7  TNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRI 66

Query: 63 TKLDQILLNGNNIAI 78
          TKLDQILLNGNNI +
Sbjct: 67 TKLDQILLNGNNITM 81

[Close]
BLAST of Chy4G075900 vs. ExPASy Swiss-Prot
Match: Q9Y4Y9 (U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens OX=9606 GN=LSM5 PE=1 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 5.6e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 3  SNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRI 62
          +NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRI
Sbjct: 7  TNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRI 66

Query: 63 TKLDQILLNGNNIAI 78
          TKLDQILLNGNNI +
Sbjct: 67 TKLDQILLNGNNITM 81

[Close]
BLAST of Chy4G075900 vs. ExPASy Swiss-Prot
Match: P62322 (U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus OX=10090 GN=Lsm5 PE=3 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 5.6e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 3  SNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRI 62
          +NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRI
Sbjct: 7  TNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRI 66

Query: 63 TKLDQILLNGNNIAI 78
          TKLDQILLNGNNI +
Sbjct: 67 TKLDQILLNGNNITM 81

[Close]
BLAST of Chy4G075900 vs. ExPASy Swiss-Prot
Match: Q5R628 (U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii OX=9601 GN=LSM5 PE=3 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 5.6e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 3  SNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRI 62
          +NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRI
Sbjct: 7  TNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRI 66

Query: 63 TKLDQILLNGNNIAI 78
          TKLDQILLNGNNI +
Sbjct: 67 TKLDQILLNGNNITM 81

[Close]
BLAST of Chy4G075900 vs. ExPASy TrEMBL
Match: I3SNB2 (U6 snRNA-associated Sm-like protein LSm5 OS=Lotus japonicus OX=34305 GN=LSM5 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.4e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAI 78
          RITKLDQILLNGNNIAI
Sbjct: 61 RITKLDQILLNGNNIAI 77

[Close]
BLAST of Chy4G075900 vs. ExPASy TrEMBL
Match: A0A0B0NQ45 (U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium arboreum OX=29729 GN=LOC108488428 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.4e-34
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAI 78
          RITKLDQILLNGNNIAI
Sbjct: 61 RITKLDQILLNGNNIAI 77

[Close]
BLAST of Chy4G075900 vs. ExPASy TrEMBL
Match: A0A2P5WT65 (U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium barbadense OX=3634 GN=LSM5 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.4e-34
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAI 78
          RITKLDQILLNGNNIAI
Sbjct: 61 RITKLDQILLNGNNIAI 77

[Close]
BLAST of Chy4G075900 vs. ExPASy TrEMBL
Match: A0A0B2RAJ5 (U6 snRNA-associated Sm-like protein LSm5 OS=Glycine soja OX=3848 GN=LSM5 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.4e-34
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAI 78
          RITKLDQILLNGNNIAI
Sbjct: 61 RITKLDQILLNGNNIAI 77

[Close]
BLAST of Chy4G075900 vs. ExPASy TrEMBL
Match: A0A445KN55 (U6 snRNA-associated Sm-like protein LSm5 OS=Glycine soja OX=3848 GN=LSM5 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.4e-34
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAI 78
          RITKLDQILLNGNNIAI
Sbjct: 61 RITKLDQILLNGNNIAI 77

[Close]
BLAST of Chy4G075900 vs. NCBI nr
Match: AFK41754.1 (unknown [Lotus japonicus])

HSP 1 Score: 155 bits (391), Expect = 2.63e-47
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAI 77
          RITKLDQILLNGNNIAI
Sbjct: 61 RITKLDQILLNGNNIAI 77

[Close]
BLAST of Chy4G075900 vs. NCBI nr
Match: XP_004504703.1 (sm-like protein LSM5 [Cicer arietinum] >XP_012085226.1 sm-like protein LSM5 [Jatropha curcas] >XP_013457335.1 sm-like protein LSM5 [Medicago truncatula] >XP_015575945.1 sm-like protein LSM5 [Ricinus communis] >XP_015957485.1 sm-like protein LSM5 [Arachis duranensis] >XP_016190536.1 sm-like protein LSM5 [Arachis ipaensis] >XP_016708763.1 sm-like protein LSM5 [Gossypium hirsutum] >XP_017648195.1 PREDICTED: sm-like protein LSM5 [Gossypium arboreum] >XP_017970003.1 PREDICTED: sm-like protein LSM5 [Theobroma cacao] >XP_021274360.1 sm-like protein LSM5 [Herrania umbratica] >XP_021631942.1 sm-like protein LSM5 [Manihot esculenta] >XP_021683952.1 sm-like protein LSM5 [Hevea brasiliensis] >XP_022159125.1 sm-like protein LSM5 [Momordica charantia] >XP_022758624.1 sm-like protein LSM5 [Durio zibethinus] >XP_022930959.1 sm-like protein LSM5 [Cucurbita moschata] >XP_022995599.1 sm-like protein LSM5 [Cucurbita maxima] >XP_023532583.1 sm-like protein LSM5 [Cucurbita pepo subsp. pepo] >XP_023923008.1 sm-like protein LSM5 [Quercus suber] >XP_023923009.1 sm-like protein LSM5 [Quercus suber] >XP_023923155.1 sm-like protein LSM5 [Quercus suber] >XP_025639691.1 sm-like protein LSM5 [Arachis hypogaea] >XP_025639692.1 sm-like protein LSM5 [Arachis hypogaea] >XP_025691321.1 sm-like protein LSM5 [Arachis hypogaea] >XP_027348492.1 sm-like protein LSM5 [Abrus precatorius] >XP_030933673.1 sm-like protein LSM5 [Quercus lobata] >XP_030933674.1 sm-like protein LSM5 [Quercus lobata] >XP_030936832.1 sm-like protein LSM5 [Quercus lobata] >XP_038681479.1 sm-like protein LSM5 [Tripterygium wilfordii] >XP_038681480.1 sm-like protein LSM5 [Tripterygium wilfordii] >XP_038724027.1 sm-like protein LSM5 isoform X2 [Tripterygium wilfordii] >XP_038887865.1 sm-like protein LSM5 [Benincasa hispida] >XP_039005698.1 sm-like protein LSM5 [Hibiscus syriacus] >XP_039031317.1 sm-like protein LSM5 [Hibiscus syriacus] >KAB2057077.1 hypothetical protein ES319_A11G146100v1 [Gossypium barbadense] >KAF3966647.1 hypothetical protein CMV_009271 [Castanea mollissima] >KAG6606325.1 Sm-like protein LSM5, partial [Cucurbita argyrosperma subsp. sororia] >OMO51904.1 hypothetical protein COLO4_37469 [Corchorus olitorius] >OMO99889.1 hypothetical protein CCACVL1_03561 [Corchorus capsularis] >TYG94013.1 hypothetical protein ES288_A11G155800v1 [Gossypium darwinii] >TYI00748.1 hypothetical protein ES332_A11G155300v1 [Gossypium tomentosum] >TYJ09550.1 hypothetical protein E1A91_A11G149100v1 [Gossypium mustelinum] >GAU40652.1 hypothetical protein TSUD_83300 [Trifolium subterraneum])

HSP 1 Score: 154 bits (388), Expect = 7.54e-47
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAI 77
          RITKLDQILLNGNNIAI
Sbjct: 61 RITKLDQILLNGNNIAI 77

[Close]
BLAST of Chy4G075900 vs. NCBI nr
Match: XP_039025038.1 (sm-like protein LSM5 [Hibiscus syriacus] >XP_039025039.1 sm-like protein LSM5 [Hibiscus syriacus] >KAE8681740.1 U6 snRNA-associated Sm-like protein LSm5 [Hibiscus syriacus])

HSP 1 Score: 154 bits (388), Expect = 7.54e-47
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAI 77
          RITKLDQILLNGNNIAI
Sbjct: 61 RITKLDQILLNGNNIAI 77

[Close]
BLAST of Chy4G075900 vs. NCBI nr
Match: XP_030496217.1 (sm-like protein LSM5 [Cannabis sativa] >XP_030496220.1 sm-like protein LSM5 [Cannabis sativa] >PON65323.1 LSM domain/archaea-type [Trema orientale] >RDY13010.1 Sm-like protein LSM5 [Mucuna pruriens] >TKY59618.1 Sm protein LSM5 [Spatholobus suberectus])

HSP 1 Score: 154 bits (388), Expect = 7.54e-47
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAI 77
          RITKLDQILLNGNNIAI
Sbjct: 61 RITKLDQILLNGNNIAI 77

[Close]
BLAST of Chy4G075900 vs. NCBI nr
Match: KAF3436012.1 (hypothetical protein FNV43_RR23104 [Rhamnella rubrinervis])

HSP 1 Score: 154 bits (388), Expect = 7.54e-47
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAI 77
          RITKLDQILLNGNNIAI
Sbjct: 61 RITKLDQILLNGNNIAI 77

[Close]
BLAST of Chy4G075900 vs. TAIR 10
Match: AT5G48870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 151.0 bits (380), Expect = 4.0e-37
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAI 78
          R+TKLDQILLNGNNIAI
Sbjct: 61 RVTKLDQILLNGNNIAI 77

[Close]
BLAST of Chy4G075900 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 47.8 bits (112), Expect = 4.7e-06
Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 0 

Query: 1  MASNPSQLL---PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY 60
          MAS   Q +   P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E 
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 EITAEGRRITKLDQILLNGNNIAI 78
           I  + R+   L +ILL G+NI +
Sbjct: 61 SIKKKTRK--PLGRILLKGDNITL 82

[Close]
BLAST of Chy4G075900 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 47.4 bits (111), Expect = 6.2e-06
Identity = 31/84 (36.90%), Postives = 45/84 (53.57%), Query Frame = 0 

Query: 1  MASNPSQLL---PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY 60
          MAS   Q +   P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E 
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 EITAEGRRITKLDQILLNGNNIAI 78
           I    R+   L +ILL G+NI +
Sbjct: 61 SIKKNTRK--PLGRILLKGDNITL 82

[Close]
BLAST of Chy4G075900 vs. TAIR 10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.0e-04
Identity = 21/49 (42.86%), Postives = 30/49 (61.22%), Query Frame = 0 

Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAE 59
          P +LI   I  +I+V ++ D+EL G L  FD ++NM+L DV E   T E
Sbjct: 12 PLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

[Close]
BLAST of Chy4G075900 vs. TAIR 10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.0e-04
Identity = 21/75 (28.00%), Postives = 38/75 (50.67%), Query Frame = 0 

Query: 3  SNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRI 62
          + P ++  S  +   +  K+ V+++  ++L+GTLR FD + N VLE   E  I  E    
Sbjct: 4  AGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCD 63

Query: 63 TKLDQILLNGNNIAI 78
            L   ++ G N+ +
Sbjct: 64 IPLGLYVIRGENVVL 78

The following BLAST results are available for this feature:
BLAST of Chy4G075900 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FKB05.6e-3694.81Sm-like protein LSM5 OS=Arabidopsis thaliana OX=3702 GN=LSM5 PE=1 SV=1[more]
Q2HJH05.6e-2877.33U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus OX=9913 GN=LSM5 PE=3 SV=3[more]
Q9Y4Y95.6e-2877.33U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens OX=9606 GN=LSM5 PE=1 SV... [more]
P623225.6e-2877.33U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus OX=10090 GN=Lsm5 PE=3 S... [more]
Q5R6285.6e-2877.33U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii OX=9601 GN=LSM5 PE=3 SV... [more]
BLAST of Chy4G075900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
I3SNB26.4e-35100.00U6 snRNA-associated Sm-like protein LSm5 OS=Lotus japonicus OX=34305 GN=LSM5 PE=... [more]
A0A0B0NQ451.4e-3498.70U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium arboreum OX=29729 GN=LOC10... [more]
A0A2P5WT651.4e-3498.70U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium barbadense OX=3634 GN=LSM5... [more]
A0A0B2RAJ51.4e-3498.70U6 snRNA-associated Sm-like protein LSm5 OS=Glycine soja OX=3848 GN=LSM5 PE=3 SV... [more]
A0A445KN551.4e-3498.70U6 snRNA-associated Sm-like protein LSm5 OS=Glycine soja OX=3848 GN=LSM5 PE=3 SV... [more]
BLAST of Chy4G075900 vs. NCBI nr
Match NameE-valueIdentityDescription
AFK41754.12.63e-47100.00unknown [Lotus japonicus][more]
XP_004504703.17.54e-4798.70sm-like protein LSM5 [Cicer arietinum] >XP_012085226.1 sm-like protein LSM5 [Jat... [more]
XP_039025038.17.54e-4798.70sm-like protein LSM5 [Hibiscus syriacus] >XP_039025039.1 sm-like protein LSM5 [H... [more]
XP_030496217.17.54e-4798.70sm-like protein LSM5 [Cannabis sativa] >XP_030496220.1 sm-like protein LSM5 [Can... [more]
KAF3436012.17.54e-4798.70hypothetical protein FNV43_RR23104 [Rhamnella rubrinervis][more]
BLAST of Chy4G075900 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G48870.14.0e-3794.81Small nuclear ribonucleoprotein family protein [more]
AT4G30330.14.7e-0636.90Small nuclear ribonucleoprotein family protein [more]
AT2G18740.16.2e-0636.90Small nuclear ribonucleoprotein family protein [more]
AT1G21190.12.0e-0442.86Small nuclear ribonucleoprotein family protein [more]
AT3G14080.12.0e-0428.00Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 12..77
e-value: 4.8E-15
score: 66.0
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 13..76
e-value: 7.1E-20
score: 70.5
NoneNo IPR availableGENE3D2.30.30.100coord: 9..77
e-value: 1.3E-24
score: 87.7
NoneNo IPR availablePANTHERPTHR20971:SF4U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5coord: 1..77
IPR033871Sm-like protein LSm5PANTHERPTHR20971U6 SNRNA-ASSOCIATED PROTEINcoord: 1..77
IPR033871Sm-like protein LSm5CDDcd01732LSm5coord: 7..77
e-value: 1.13585E-46
score: 141.228
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 8..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G075900.1Chy4G075900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:1990726 Lsm1-7-Pat1 complex
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005688 U6 snRNP
molecular_function GO:0003723 RNA binding