Chy4G074820 (gene) Cucumber (hystrix) v1

Overview
NameChy4G074820
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH04: 9721824 .. 9722613 (+)
RNA-Seq ExpressionChy4G074820
SyntenyChy4G074820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCTCATTTGTATACAATTCCACCAAGGTCCACTTGACATGTACAGATCAACATATACTTGAAAAAAATAAATAAATATAGTTGAAGATTGAAAATTAGAATATTTGAAAACAATTTAATTAATTTATTATTAGGAAATAAGTTAAAATAGAGTTCTATACATAAACATTAATATTAAAATCAAAATGAACTTTTTCAACTCTATTTTATGGAGTTACATTACATCAAAGCTGGCTCTTAGCATATATATATTGAAGGGCATATATGATAATCTAATTATTAATGTATGTTATTATCTATATAATATGTTAATACAAACAACAGTGTTTATACACACATAATTTGTGCCTAATTCTAGTTCTCTTCTCATCAGCTTCTTCTCTCTATTTCTATACCTTAGTTGCACAAAAACTGAAAACACAATGGCTGGAAGCTATGAGGATCATCAGGAAGAACTAGGGCGCTGTGGGATTCAGTTTCGGAGGCGGCGAAGAATGGCAGTGGCACGACTTGGGGGGAAGAGATCGGGACGGATCGTGGCGTGGGGGAGGATAGTGAGGAAGATAAGACTGAAATGGGTGAAGATGAAATGCATAGAGATGGTGAAGAAGATGAAAAAATACTACAAAGAGTTGATGAAGGATATAATGGAAGCAGGAGCTTATGGATATGCTGACTCATATCAACATAGGCTTCTTTTGGAGACTTCTTTTGCTATTCCAATTCTGGGTGTCTCTCTTTCTACTCATTCTAGTATTCATGCTGCTAGAGCTGCTACTTCATAA

mRNA sequence

ATGGCTCCTCATTTGTATACAATTCCACCAAGTTGCACAAAAACTGAAAACACAATGGCTGGAAGCTATGAGGATCATCAGGAAGAACTAGGGCGCTGTGGGATTCAGTTTCGGAGGCGGCGAAGAATGGCAGTGGCACGACTTGGGGGGAAGAGATCGGGACGGATCGTGGCGTGGGGGAGGATAGTGAGGAAGATAAGACTGAAATGGGTGAAGATGAAATGCATAGAGATGGTGAAGAAGATGAAAAAATACTACAAAGAGTTGATGAAGGATATAATGGAAGCAGGAGCTTATGGATATGCTGACTCATATCAACATAGGCTTCTTTTGGAGACTTCTTTTGCTATTCCAATTCTGGGTGTCTCTCTTTCTACTCATTCTAGTATTCATGCTGCTAGAGCTGCTACTTCATAA

Coding sequence (CDS)

ATGGCTCCTCATTTGTATACAATTCCACCAAGTTGCACAAAAACTGAAAACACAATGGCTGGAAGCTATGAGGATCATCAGGAAGAACTAGGGCGCTGTGGGATTCAGTTTCGGAGGCGGCGAAGAATGGCAGTGGCACGACTTGGGGGGAAGAGATCGGGACGGATCGTGGCGTGGGGGAGGATAGTGAGGAAGATAAGACTGAAATGGGTGAAGATGAAATGCATAGAGATGGTGAAGAAGATGAAAAAATACTACAAAGAGTTGATGAAGGATATAATGGAAGCAGGAGCTTATGGATATGCTGACTCATATCAACATAGGCTTCTTTTGGAGACTTCTTTTGCTATTCCAATTCTGGGTGTCTCTCTTTCTACTCATTCTAGTATTCATGCTGCTAGAGCTGCTACTTCATAA

Protein sequence

MAPHLYTIPPSCTKTENTMAGSYEDHQEELGRCGIQFRRRRRMAVARLGGKRSGRIVAWGRIVRKIRLKWVKMKCIEMVKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAARAATS*
Homology
BLAST of Chy4G074820 vs. ExPASy TrEMBL
Match: A0A0A0LBW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G644780 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.9e-56
Identity = 117/120 (97.50%), Postives = 117/120 (97.50%), Query Frame = 0

Query: 19  MAGSYEDHQEELGRCGIQFRRRRRMAVARLGGKRSGRIVAWGRIVRKIRLKWVKMKCIEM 78
           MAGSYEDHQEEL RCGIQFRRRRRMAVARLGGKRSGRIV WGRIVRKIRLKWVKMKCIEM
Sbjct: 1   MAGSYEDHQEELRRCGIQFRRRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWVKMKCIEM 60

Query: 79  VKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAARAATS 138
           VKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAA AATS
Sbjct: 61  VKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAATAATS 120

BLAST of Chy4G074820 vs. ExPASy TrEMBL
Match: A0A5D3DCV1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45855G00010 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.3e-50
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0

Query: 19  MAGSYEDHQEELGRCGIQFRRRRRMAVARLGGKRSGRIVAWGRIVRKIRLKWVKMKCIEM 78
           MA SY DHQEEL R GIQFRRRR+MAVARLGGKRSGRI+AWGRIVRKIRLKWVKMKCIEM
Sbjct: 1   MAESYGDHQEELRRHGIQFRRRRKMAVARLGGKRSGRIMAWGRIVRKIRLKWVKMKCIEM 60

Query: 79  VKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSS-IHAARAAT 138
           VKKMKKYYK+LMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSS IHAA AA+
Sbjct: 61  VKKMKKYYKKLMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIIHAAAAAS 120

BLAST of Chy4G074820 vs. ExPASy TrEMBL
Match: A0A6J1GAR0 (uncharacterized protein LOC111452314 OS=Cucurbita moschata OX=3662 GN=LOC111452314 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.8e-33
Identity = 85/105 (80.95%), Postives = 93/105 (88.57%), Query Frame = 0

Query: 32  RCGIQFRRRRRMAVARLGGKRSGRIVAWGRIVRKIRLKWVKMKCIEMVKKMKKYYKELMK 91
           R GIQF RRRRMAVARLGGKRSGR+VAWGR +RKIRL+WVK+KCI MVKK+KKY   LMK
Sbjct: 22  RQGIQF-RRRRMAVARLGGKRSGRLVAWGRRLRKIRLRWVKLKCIAMVKKVKKYCASLMK 81

Query: 92  DIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAARAA 137
           D+MEAGAYG  DSYQHRLLLETSFAIPILGVS STHS+ HAA +A
Sbjct: 82  DMMEAGAYG--DSYQHRLLLETSFAIPILGVSFSTHST-HAAASA 122

BLAST of Chy4G074820 vs. ExPASy TrEMBL
Match: A0A6J1GVZ8 (uncharacterized protein LOC111458050 OS=Cucurbita moschata OX=3662 GN=LOC111458050 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 8.3e-33
Identity = 82/102 (80.39%), Postives = 92/102 (90.20%), Query Frame = 0

Query: 32  RCGIQFRRRRRMAVARLGGKRSGRIVAWGRIVRKIRLKWVKMKCIEMVKKMKKYYKELMK 91
           R G++F RRRRM VARLGGKRSGR+VAWGR++RKIRL+WVK+KCI MVKKMK+YY  LMK
Sbjct: 25  RRGMRF-RRRRMPVARLGGKRSGRLVAWGRMLRKIRLRWVKLKCIAMVKKMKEYYTRLMK 84

Query: 92  DIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAA 134
           DI+EAGA  YA SYQHRLLLETSFAIPILGVSLSTHSS+ AA
Sbjct: 85  DIIEAGA--YARSYQHRLLLETSFAIPILGVSLSTHSSVLAA 123

BLAST of Chy4G074820 vs. ExPASy TrEMBL
Match: A0A6J1D3L4 (uncharacterized protein LOC111016963 OS=Momordica charantia OX=3673 GN=LOC111016963 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 68/118 (57.63%), Postives = 86/118 (72.88%), Query Frame = 0

Query: 16  ENTMAGSYEDHQEELGRC----GIQFRRRRRMAVARLGGKRSGRIVA-WGRIVRKIRLKW 75
           ++ M   YE       RC    GIQFRRRRRM VARLGG  SG      GR+VRKIR++W
Sbjct: 25  QSQMGEGYETENGPGLRCAARRGIQFRRRRRMPVARLGGPGSGSGPGRLGRMVRKIRVRW 84

Query: 76  VKMKCIEMVKKMKKYYKELMKDIMEA-GAYGYADSYQHRLLLETSFAIPILGVSLSTH 128
           VK++C+ MVKKMKK+Y++++KD++EA  A  Y +SYQHR+LLETSFAIPIL  SLST+
Sbjct: 85  VKLRCLAMVKKMKKWYRKVLKDVIEAQAAVAYPESYQHRVLLETSFAIPILPRSLSTY 142

BLAST of Chy4G074820 vs. NCBI nr
Match: XP_011652825.1 (uncharacterized protein LOC105435118 [Cucumis sativus] >KGN58439.1 hypothetical protein Csa_000856 [Cucumis sativus])

HSP 1 Score: 224 bits (572), Expect = 2.34e-73
Identity = 117/120 (97.50%), Postives = 117/120 (97.50%), Query Frame = 0

Query: 19  MAGSYEDHQEELGRCGIQFRRRRRMAVARLGGKRSGRIVAWGRIVRKIRLKWVKMKCIEM 78
           MAGSYEDHQEEL RCGIQFRRRRRMAVARLGGKRSGRIV WGRIVRKIRLKWVKMKCIEM
Sbjct: 1   MAGSYEDHQEELRRCGIQFRRRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWVKMKCIEM 60

Query: 79  VKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAARAATS 138
           VKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAA AATS
Sbjct: 61  VKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAATAATS 120

BLAST of Chy4G074820 vs. NCBI nr
Match: KAA0053479.1 (uncharacterized protein E6C27_scaffold190G00270 [Cucumis melo var. makuwa] >TYK21501.1 uncharacterized protein E5676_scaffold45855G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (523), Expect = 7.12e-66
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0

Query: 19  MAGSYEDHQEELGRCGIQFRRRRRMAVARLGGKRSGRIVAWGRIVRKIRLKWVKMKCIEM 78
           MA SY DHQEEL R GIQFRRRR+MAVARLGGKRSGRI+AWGRIVRKIRLKWVKMKCIEM
Sbjct: 1   MAESYGDHQEELRRHGIQFRRRRKMAVARLGGKRSGRIMAWGRIVRKIRLKWVKMKCIEM 60

Query: 79  VKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSI-HAARAAT 138
           VKKMKKYYK+LMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSI HAA AA+
Sbjct: 61  VKKMKKYYKKLMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIIHAAAAAS 120

BLAST of Chy4G074820 vs. NCBI nr
Match: XP_038891072.1 (uncharacterized protein LOC120080455 [Benincasa hispida])

HSP 1 Score: 159 bits (402), Expect = 2.10e-47
Identity = 93/120 (77.50%), Postives = 100/120 (83.33%), Query Frame = 0

Query: 19  MAGSYE--DHQEELG-----RCGIQFRRRRRMAVARLGGKRSGRIVAWGRIVRKIRLKWV 78
           MA SYE  + Q   G     R GIQFRRRR M VARLGGKRSGRIVAWGR++RKIRL+WV
Sbjct: 1   MAQSYEQGEGQPAAGLRWGMRRGIQFRRRR-MPVARLGGKRSGRIVAWGRMLRKIRLRWV 60

Query: 79  KMKCIEMVKKMKKYYKELMKDIMEAGAYGYA-DSYQHRLLLETSFAIPILGVSLSTHSSI 130
           K+KCI MVKK+KKYY  LMKDIME GAYGYA DSYQHRLL+ETSFAIPILGVSLSTHSSI
Sbjct: 61  KVKCIAMVKKIKKYYTSLMKDIMEGGAYGYAADSYQHRLLMETSFAIPILGVSLSTHSSI 119

BLAST of Chy4G074820 vs. NCBI nr
Match: XP_022948735.1 (uncharacterized protein LOC111452314 [Cucurbita moschata] >XP_023523769.1 uncharacterized protein LOC111787905 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150 bits (378), Expect = 8.84e-44
Identity = 90/129 (69.77%), Postives = 101/129 (78.29%), Query Frame = 0

Query: 8   IPPSCTKTENTMAGSYEDHQEELGRCGIQFRRRRRMAVARLGGKRSGRIVAWGRIVRKIR 67
           +P S  + E   AG+         R GIQFRRRR MAVARLGGKRSGR+VAWGR +RKIR
Sbjct: 1   MPQSSEQEEGQQAGA---GLRWATRQGIQFRRRR-MAVARLGGKRSGRLVAWGRRLRKIR 60

Query: 68  LKWVKMKCIEMVKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTH 127
           L+WVK+KCI MVKK+KKY   LMKD+MEAGAYG  DSYQHRLLLETSFAIPILGVS STH
Sbjct: 61  LRWVKLKCIAMVKKVKKYCASLMKDMMEAGAYG--DSYQHRLLLETSFAIPILGVSFSTH 120

Query: 128 SSIHAARAA 136
           S+ HAA +A
Sbjct: 121 ST-HAAASA 122

BLAST of Chy4G074820 vs. NCBI nr
Match: KAG7018218.1 (hypothetical protein SDJN02_20086, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149 bits (376), Expect = 1.53e-43
Identity = 85/118 (72.03%), Postives = 98/118 (83.05%), Query Frame = 0

Query: 19  MAGSYEDHQEELG---RCGIQFRRRRRMAVARLGGKRSGRIVAWGRIVRKIRLKWVKMKC 78
           M   YE  + + G   R G++FRRRR M VARLGGKRSGR+VAWGR++RKIRL+WVK+KC
Sbjct: 1   MGQPYEPEEGQPGAGLRRGMRFRRRR-MPVARLGGKRSGRLVAWGRMLRKIRLRWVKLKC 60

Query: 79  IEMVKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAA 133
           I MVKKMK+YY  LMKDI+EAGAY  A SYQHR+LLETSFAIPILGVSLSTHSS+ AA
Sbjct: 61  IAMVKKMKEYYTRLMKDIIEAGAY--AHSYQHRVLLETSFAIPILGVSLSTHSSVLAA 115

BLAST of Chy4G074820 vs. TAIR 10
Match: AT1G54120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14060.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-09
Identity = 40/102 (39.22%), Postives = 67/102 (65.69%), Query Frame = 0

Query: 39  RRRRMAVARLGGKRSGRIVAWG-----RIVRKIRLKWVKMKCIEMVKKMKKYYKELMKDI 98
           RRR+  V RLGGK S   V+ G     ++VR+++L+W+K+  + +VKK+K +Y+ L+K+ 
Sbjct: 23  RRRKSQVVRLGGKNSA--VSRGGFSLKKMVRRMKLRWLKLHYVRVVKKIKVFYRNLVKEF 82

Query: 99  MEAGAYGYADSYQHRLLLE-TSFAIPILGVSLSTHSSIHAAR 135
           ++AGA    ++ Q R+ +E  +FA+P LG+S S+ S    AR
Sbjct: 83  VDAGA--ELEAIQQRMAVEAAAFAVPGLGLSFSSFSVHDRAR 120

BLAST of Chy4G074820 vs. TAIR 10
Match: AT3G14060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54120.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-08
Identity = 36/90 (40.00%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 37  FRRRRRMAVARLGGKRSGRIVAWG--RIVRKIRLKWVKMKCIEMVKKMKKYYKELMKDIM 96
           + RRR+  V RLGGK S    ++   ++V ++RLKW+++  + +VKK+K YY+ ++K+  
Sbjct: 24  YLRRRKPQVVRLGGKNSTPRGSFSLKKVVTRMRLKWLRLYYVRLVKKIKAYYRTIVKEFE 83

Query: 97  EAGAYGYADSYQHRLLLET-SFAIPILGVS 124
           EAG    A + Q R+ +ET +FA P LG+S
Sbjct: 84  EAG----AATIQQRMTVETAAFAAPGLGLS 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LBW76.9e-5697.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G644780 PE=4 SV=1[more]
A0A5D3DCV13.3e-5091.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1GAR02.8e-3380.95uncharacterized protein LOC111452314 OS=Cucurbita moschata OX=3662 GN=LOC1114523... [more]
A0A6J1GVZ88.3e-3380.39uncharacterized protein LOC111458050 OS=Cucurbita moschata OX=3662 GN=LOC1114580... [more]
A0A6J1D3L41.3e-2257.63uncharacterized protein LOC111016963 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
Match NameE-valueIdentityDescription
XP_011652825.12.34e-7397.50uncharacterized protein LOC105435118 [Cucumis sativus] >KGN58439.1 hypothetical ... [more]
KAA0053479.17.12e-6691.74uncharacterized protein E6C27_scaffold190G00270 [Cucumis melo var. makuwa] >TYK2... [more]
XP_038891072.12.10e-4777.50uncharacterized protein LOC120080455 [Benincasa hispida][more]
XP_022948735.18.84e-4469.77uncharacterized protein LOC111452314 [Cucurbita moschata] >XP_023523769.1 unchar... [more]
KAG7018218.11.53e-4372.03hypothetical protein SDJN02_20086, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
AT1G54120.11.7e-0939.22unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G14060.12.4e-0840.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34788F15I1.22coord: 30..130
NoneNo IPR availablePANTHERPTHR34788:SF4F15I1.22coord: 30..130

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G074820.1Chy4G074820.1mRNA