Chy4G074110 (gene) Cucumber (hystrix) v1

Overview
NameChy4G074110
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrotransposon protein
LocationchrH04: 8325513 .. 8326455 (+)
RNA-Seq ExpressionChy4G074110
SyntenyChy4G074110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTTCTTCAAGAGCACCAAAACACACATAGATTAAAAGAGGAAGAAGCAAAACTGGTTGAGTGCTTGGTGGAATTGGTTTCATCTGGTGGATGGTGATCGGATAATGGGACATTTCGACCTGGGTACTTGGCCCAATTACAACGGATGATGGCAAAGAAGTTGCCCGACACTAGTATCAAGGATTGTCATGTGAAATCCTTTAAAAAAACCTACCAAGCAATTGCAAAAATGAGGGGACCATCGTGTAGTGGCTTTGGATGGAACGAAGAATATCAATGCATCATTGCAGAACGACAGTTGTTTGATAGTTGGGTCAAGGTATTAATTTCACAGTACAATTTTATGTACTTTTATAATCCCAATCATCAACTAATCTATCTGAATTATGTTTGTACAGAGTCATCCTGCAGCCAAAGGCCTTCTACATAAATCATTTTCATGTTATGCTAAACGTTTAGAGACCTTTGCTGATGTCTGATCTAATGTGCATTACAATTTTAATGATGGTGTTTCCCTCGGTGATTCACATGATCAAGACATCCCGACGATGTATAGCCAAGGACTGCATATGTCACCAGTTGAGATGATAGGAACACGTGAAGGTCGATCAGGTGAAGGAAGAAATTGTTCAAGTGGAAGAGAAAATGGGGTGGCAAACATTATGAGGAGATAGATGTGATCAGTAATGCAATGGAAGTTAGAAATGATCAATTAAAGACAATTTCAAATTGGCCGAAAGAAAAGCGTGCAATAGACATCGAATTATGTGTTGAAGGTGGGAAACAGTTGCAAGATATCCCTGAACTACAGAGCCGAGACAGGGTAAAGCTTATGCAAATCATATTCCATAGGGTGGATGACATAGAGGGATTCTTGTCGTGTCCAATAGAACTTAAATTGGAGTATTGCAAGGTTCTCTTGGAAGATAATGTTTGA

mRNA sequence

ATGGCAAGTTCTTCAAGAGCACCAAAACACACATAGATTAAAAGAGGAAGAAGCAAAACTGGTTGAGTGCTTGGTGGAATTGGTTTCATCTGGTGGATGGTGATCGGATAATGGGACATTTCGACCTGGGTACTTGGCCCAATTACAACGGATGATGGCAAAGAAGTTGCCCGACACTAGTATCAAGGATTGTCATGTGAAATCCTTTAAAAAAACCTACCAAGCAATTGCAAAAATGAGGGGACCATCGTGTAGTGGCTTTGGATGGAACGAAGAATATCAATGCATCATTGCAGAACGACAGTTGTTTGATAGTTGGGTCAAGAGTCATCCTGCAGCCAAAGGCCTTCTACATAAATCATTTTCATGTTATGCTAAACGTTTAGAGACCTTTGCTGATGTCTGATCTAATGTGCATGATCAAGACATCCCGACGATGTATAGCCAAGGACTGCATATGTCACCAGTTGAGATGATAGGAACACGTGAAGGTCGATCAGGTGAAGGAAGAAATTGTTCAAGTGGAAGAGAAAATGGGGTGGCAAACATTATGAGGAGATAGATGTGATCAGTAATGCAATGGAAGTTAGAAATGATCAATTAAAGACAATTTCAAATTGGCCGAAAGAAAAGCGTGCAATAGACATCGAATTATGTGTTGAAGGTGGGAAACAGTTGCAAGATATCCCTGAACTACAGAGCCGAGACAGGGTAAAGCTTATGCAAATCATATTCCATAGGGTGGATGACATAGAGGGATTCTTGTCGTGTCCAATAGAACTTAAATTGGAGTATTGCAAGGTTCTCTTGGAAGATAATGTTTGA

Coding sequence (CDS)

ATGGCAAGTTCTTCAAGAGCACCAAAACACACATAGATTAAAAGAGGAAGAAGCAAAACTGGTTGAGTGCTTGGTGGAATTGGTTTCATCTGGTGGATGGTGATCGGATAATGGGACATTTCGACCTGGGTACTTGGCCCAATTACAACGGATGATGGCAAAGAAGTTGCCCGACACTAGTATCAAGGATTGTCATGTGAAATCCTTTAAAAAAACCTACCAAGCAATTGCAAAAATGAGGGGACCATCGTGTAGTGGCTTTGGATGGAACGAAGAATATCAATGCATCATTGCAGAACGACAGTTGTTTGATAGTTGGGTCAAGAGTCATCCTGCAGCCAAAGGCCTTCTACATAAATCATTTTCATGTTATGCTAAACGTTTAGAGACCTTTGCTGATGTCTGATCTAATGTGCATGATCAAGACATCCCGACGATGTATAGCCAAGGACTGCATATGTCACCAGTTGAGATGATAGGAACACGTGAAGGTCGATCAGGTGAAGGAAGAAATTGTTCAAGTGGAAGAGAAAATGGGGTGGCAAACATTATGAGGAGATAGATGTGATCAGTAATGCAATGGAAGTTAGAAATGATCAATTAAAGACAATTTCAAATTGGCCGAAAGAAAAGCGTGCAATAGACATCGAATTATGTGTTGAAGGTGGGAAACAGTTGCAAGATATCCCTGAACTACAGAGCCGAGACAGGGTAAAGCTTATGCAAATCATATTCCATAGGGTGGATGACATAGAGGGATTCTTGTCGTGTCCAATAGAACTTAAATTGGAGTATTGCAAGGTTCTCTTGGAAGATAATGTTTGA

Protein sequence

MASSSRAPKHT*IKRGRSKTG*VLGGIGFIWWMVIG*WDISTWVLGPITTDDGKEVARH*YQGLSCEIL*KNLPSNCKNEGTIV*WLWMERRISMHHCRTTVV**LGQESSCSQRPST*IIFMLC*TFRDLC*CLI*CA*SRHPDDV*PRTAYVTS*DDRNT*RSIR*RKKLFKWKRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLEDNV*
Homology
BLAST of Chy4G074110 vs. ExPASy TrEMBL
Match: A0A0A0KFW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116150 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.9e-36
Identity = 78/99 (78.79%), Postives = 87/99 (87.88%), Query Frame = 0

Query: 176 KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSR 235
           KRK GG+HYE +DVISN MEVRNDQLK I+NW KEKRA ++EL VE  KQLQDI EL++R
Sbjct: 30  KRKHGGQHYEAVDVISNEMEVRNDQLKAIANWSKEKRATEVELHVEVVKQLQDISELRTR 89

Query: 236 DRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLEDNV 275
           DRVKLMQIIFH VDDIEGFLSCP +LKLEYC+VLLEDNV
Sbjct: 90  DRVKLMQIIFHMVDDIEGFLSCPTKLKLEYCRVLLEDNV 128

BLAST of Chy4G074110 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.9e-29
Identity = 66/99 (66.67%), Postives = 81/99 (81.82%), Query Frame = 0

Query: 176 KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSR 235
           KRK G KHYE ++VIS+A E  NDQLKTI++WPKEKRA ++EL  E  KQLQDIP+L+S+
Sbjct: 165 KRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQ 224

Query: 236 DRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLEDNV 275
           DR KLMQI+F  V+ IEGFLS P +LKLEYC +LLE+NV
Sbjct: 225 DRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLENNV 263

BLAST of Chy4G074110 vs. ExPASy TrEMBL
Match: A0A5D3CT52 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00400 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-28
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 0

Query: 176 KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSR 235
           KRK G +HYE ++VI +AME  NDQLKTI+NWPKEKR  ++EL  E  KQLQ+I EL SR
Sbjct: 32  KRKRGSEHYETVEVIRSAMEFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILELPSR 91

Query: 236 DRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLED 273
           DR KLMQI+FH V+ IEGFLS PIELKLEYC +LL++
Sbjct: 92  DRAKLMQILFHSVEAIEGFLSIPIELKLEYCNILLQN 128

BLAST of Chy4G074110 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.4e-28
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 0

Query: 176 KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSR 235
           KRK G KHYE ++VI +A+E  NDQLK I+NWPKEKRA ++EL  E  KQLQDIPELQSR
Sbjct: 401 KRKQGSKHYETVEVIKSAIEFGNDQLKAIANWPKEKRATEVELRAEVMKQLQDIPELQSR 460

Query: 236 DRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLED 273
           DR KL+QI+F  V+ IEGFLS P E KLEYC +LL++
Sbjct: 461 DRAKLIQILFRSVEAIEGFLSIPTERKLEYCNILLQN 497

BLAST of Chy4G074110 vs. ExPASy TrEMBL
Match: A0A5A7V8C5 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00690 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26
Identity = 61/91 (67.03%), Postives = 73/91 (80.22%), Query Frame = 0

Query: 184 YEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQI 243
           Y   + I + ME  NDQLK I+NWPKEKRA ++ELCVE  KQLQDIPELQS+DR KLMQI
Sbjct: 341 YNLREYIRSLMEFGNDQLKAIANWPKEKRATEVELCVEVVKQLQDIPELQSQDRAKLMQI 400

Query: 244 IFHRVDDIEGFLSCPIELKLEYCKVLLEDNV 275
           +F  V+ IEGFLS P+ELKLEYC +LL++NV
Sbjct: 401 LFRSVETIEGFLSIPLELKLEYCNILLQNNV 431

BLAST of Chy4G074110 vs. NCBI nr
Match: KAE8646815.1 (hypothetical protein Csa_005367, partial [Cucumis sativus])

HSP 1 Score: 162 bits (410), Expect = 1.56e-46
Identity = 77/98 (78.57%), Postives = 86/98 (87.76%), Query Frame = 0

Query: 176 KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSR 235
           KRK GG+HYE +DVISN MEVRNDQLK I+NW KEKRA ++EL VE  KQLQDI EL++R
Sbjct: 30  KRKHGGQHYEAVDVISNEMEVRNDQLKAIANWSKEKRATEVELHVEVVKQLQDISELRTR 89

Query: 236 DRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLEDN 273
           DRVKLMQIIFH VDDIEGFLSCP +LKLEYC+VLLEDN
Sbjct: 90  DRVKLMQIIFHMVDDIEGFLSCPTKLKLEYCRVLLEDN 127

BLAST of Chy4G074110 vs. NCBI nr
Match: KAA0066604.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14214.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 1.34e-36
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 0

Query: 176 KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSR 235
           KRK G +HYE ++VI +AME  NDQLKTI+NWPKEKR  ++EL  E  KQLQ+I EL SR
Sbjct: 32  KRKRGSEHYETVEVIRSAMEFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILELPSR 91

Query: 236 DRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLED 272
           DR KLMQI+FH V+ IEGFLS PIELKLEYC +LL++
Sbjct: 92  DRAKLMQILFHSVEAIEGFLSIPIELKLEYCNILLQN 128

BLAST of Chy4G074110 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (352), Expect = 3.97e-36
Identity = 66/99 (66.67%), Postives = 81/99 (81.82%), Query Frame = 0

Query: 176 KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSR 235
           KRK G KHYE ++VIS+A E  NDQLKTI++WPKEKRA ++EL  E  KQLQDIP+L+S+
Sbjct: 165 KRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQ 224

Query: 236 DRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLEDNV 274
           DR KLMQI+F  V+ IEGFLS P +LKLEYC +LLE+NV
Sbjct: 225 DRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLENNV 263

BLAST of Chy4G074110 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (343), Expect = 6.61e-33
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 0

Query: 176 KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSR 235
           KRK G KHYE ++VI +A+E  NDQLK I+NWPKEKRA ++EL  E  KQLQDIPELQSR
Sbjct: 401 KRKQGSKHYETVEVIKSAIEFGNDQLKAIANWPKEKRATEVELRAEVMKQLQDIPELQSR 460

Query: 236 DRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLED 272
           DR KL+QI+F  V+ IEGFLS P E KLEYC +LL++
Sbjct: 461 DRAKLIQILFRSVEAIEGFLSIPTERKLEYCNILLQN 497

BLAST of Chy4G074110 vs. NCBI nr
Match: KAA0042340.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (322), Expect = 2.56e-32
Identity = 61/97 (62.89%), Postives = 77/97 (79.38%), Query Frame = 0

Query: 176 KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSR 235
           KRK G +HYE ++VI +AM+  NDQLK I++W KEKRA+ +EL     KQLQDIP+LQ+R
Sbjct: 107 KRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNR 166

Query: 236 DRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLED 272
           DR K++QI+FH V+ IEGFLS P ELKLEYC VLLE+
Sbjct: 167 DRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN 203

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KFW01.9e-3678.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116150 PE=4 SV=1[more]
A0A5D3BZU32.9e-2966.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CT521.9e-2867.01Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SQU22.4e-2865.98Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7V8C51.3e-2667.03Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
Match NameE-valueIdentityDescription
KAE8646815.11.56e-4678.57hypothetical protein Csa_005367, partial [Cucumis sativus][more]
KAA0066604.11.34e-3667.01retrotransposon protein [Cucumis melo var. makuwa] >TYK14214.1 retrotransposon p... [more]
KAA0031678.13.97e-3666.67retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p... [more]
KAA0033290.16.61e-3365.98putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas... [more]
KAA0042340.12.56e-3262.89retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G074110.1Chy4G074110.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding