Chy4G073860 (gene) Cucumber (hystrix) v1

Overview
NameChy4G073860
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionEpidermal patterning factor-like protein
LocationchrH04: 7774877 .. 7775364 (+)
RNA-Seq ExpressionChy4G073860
SyntenyChy4G073860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGAACATACTGGTGTTTTATATTTATTCTGCAATTAGTCTGTTGGGTTTCTGCTGCAGCCAGAAATTTTGCTCCAAATCCTGCCCTCCCTCCTCATAAACAACAAGGTTTGTTTCTTACCAATATACTCACATCTTTTCTTTGGCTTTCTCATCTCAATTATTACATCTATTTAGCAATAGGTTTTCTTCTTCTTTCACTGCCTTTTTAATTCAAGTTGCTTGTTGTTTTGTTCCTGCCAGGTCTTATTGATTCAAAACAGGTCAGACCCCTACCCTTTTTGTCACTTTATATGTGCTCTGTTTGTTGAAATAATTCATGTTTTTGGTCTGTATAAAGTCTGTTAAAGGTGTTCAAGATGAAGAATTCTATAGAGGGATGAGGAAAATAGGGTCAAGTCCACCCAGCTGTGAGCATAAGTGCTATGGATGCATTCCATGTGAAGCCATTCAAGTGCCTACAACCACCAACAGGCGCAGCCAC

mRNA sequence

ATGAAAGGAACATACTGGTGTTTTATATTTATTCTGCAATTAGTCTGTTGGGTTTCTGCTGCAGCCAGAAATTTTGCTCCAAATCCTGCCCTCCCTCCTCATAAACAACAAGGTGTTCAAGATGAAGAATTCTATAGAGGGATGAGGAAAATAGGGTCAAGTCCACCCAGCTGTGAGCATAAGTGCTATGGATGCATTCCATGTGAAGCCATTCAAGTGCCTACAACCACCAACAGGCGCAGCCAC

Coding sequence (CDS)

ATGAAAGGAACATACTGGTGTTTTATATTTATTCTGCAATTAGTCTGTTGGGTTTCTGCTGCAGCCAGAAATTTTGCTCCAAATCCTGCCCTCCCTCCTCATAAACAACAAGGTGTTCAAGATGAAGAATTCTATAGAGGGATGAGGAAAATAGGGTCAAGTCCACCCAGCTGTGAGCATAAGTGCTATGGATGCATTCCATGTGAAGCCATTCAAGTGCCTACAACCACCAACAGGCGCAGCCAC

Protein sequence

MKGTYWCFIFILQLVCWVSAAARNFAPNPALPPHKQQGVQDEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH
Homology
BLAST of Chy4G073860 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-08
Identity = 30/78 (38.46%), Postives = 43/78 (55.13%), Query Frame = 0

Query: 8  FIFILQLVCWVS-------AAARNFAPNPALPPHKQQGVQDEEFYRGMRKIGSSPPSCEH 67
          F F+  ++ ++         AA   +    L P++ +    EE  +  R+IGS PPSCE 
Sbjct: 11 FFFVFPIIIYIGPAEIIKPQAAEENSRRRILNPNENK----EEIVKRRRRIGSKPPSCEK 70

Query: 68 KCYGCIPCEAIQVPTTTN 79
          KCYGC PCEAIQ PT ++
Sbjct: 71 KCYGCEPCEAIQFPTISS 84

BLAST of Chy4G073860 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.5e-04
Identity = 22/51 (43.14%), Postives = 28/51 (54.90%), Query Frame = 0

Query: 29 PALPPHKQQGVQDEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNR 80
          P  PP   Q    E+      ++GS+PPSC ++C  C PC AIQVPT   R
Sbjct: 30 PIQPPISPQVALIED----KARLGSTPPSCHNRCNNCHPCMAIQVPTLPTR 76

BLAST of Chy4G073860 vs. ExPASy TrEMBL
Match: A0A1S3BIS6 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103490030 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.9e-38
Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = 0

Query: 1  MKGTYWCFIFILQLVCWVSAAARNFAPNPALPPHKQ---------QGVQDEEFYRGMRKI 60
          MKGTYWCFIFILQLVCWVSAAAR FAPNPAL PHKQ         +G+++EEFYRGMRKI
Sbjct: 1  MKGTYWCFIFILQLVCWVSAAARTFAPNPALLPHKQGLIESKQAVKGIKEEEFYRGMRKI 60

Query: 61 GSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH 83
          GSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH
Sbjct: 61 GSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH 91

BLAST of Chy4G073860 vs. ExPASy TrEMBL
Match: A0A5D3BVF6 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00550 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.9e-38
Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = 0

Query: 1  MKGTYWCFIFILQLVCWVSAAARNFAPNPALPPHKQ---------QGVQDEEFYRGMRKI 60
          MKGTYWCFIFILQLVCWVSAAAR FAPNPAL PHKQ         +G+++EEFYRGMRKI
Sbjct: 1  MKGTYWCFIFILQLVCWVSAAARTFAPNPALLPHKQGLIESKQAVKGIKEEEFYRGMRKI 60

Query: 61 GSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH 83
          GSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH
Sbjct: 61 GSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH 91

BLAST of Chy4G073860 vs. ExPASy TrEMBL
Match: A0A6J1IUG9 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111480029 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.0e-22
Identity = 63/98 (64.29%), Postives = 65/98 (66.33%), Query Frame = 0

Query: 1  MKGTY---WCFIFILQLVCWVSAAARNFAPNPALPPHKQQG-------------VQDEEF 60
          MKGTY    CFI  LQL CWVSAA   F    AL PHKQQG             V++ E 
Sbjct: 1  MKGTYCCCCCFILTLQLACWVSAATTTF----ALLPHKQQGFNFDSVKAVEEGVVKEGEV 60

Query: 61 YRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH 83
          YRGMRKIGSSPPSCEHKCYGC PCEAIQVP T NRRSH
Sbjct: 61 YRGMRKIGSSPPSCEHKCYGCSPCEAIQVP-TNNRRSH 93

BLAST of Chy4G073860 vs. ExPASy TrEMBL
Match: A0A6J1GTM4 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111457464 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.7e-22
Identity = 63/98 (64.29%), Postives = 64/98 (65.31%), Query Frame = 0

Query: 1  MKGTY---WCFIFILQLVCWVSAAARNFAPNPALPPHKQQG-------------VQDEEF 60
          MKGTY    CFI  LQL CWVSAA   F    AL PHKQQG             V+  E 
Sbjct: 1  MKGTYRCCCCFILTLQLACWVSAATTTF----ALLPHKQQGFNFDSVKAVEEGVVKGGEV 60

Query: 61 YRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH 83
          YRGMRKIGSSPPSCEHKCYGC PCEAIQVP T NRRSH
Sbjct: 61 YRGMRKIGSSPPSCEHKCYGCTPCEAIQVP-TNNRRSH 93

BLAST of Chy4G073860 vs. ExPASy TrEMBL
Match: A0A6J1DIF6 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111020335 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 61/94 (64.89%), Postives = 66/94 (70.21%), Query Frame = 0

Query: 1  MKGTYWCFIFILQLV--CWVSAAARNFAPNPALP--PHKQ---QGVQD-----EEFYRGM 60
          MKGT+ CFI  LQ+   CWVSAA R FAPN ALP  PHKQ    G  D     E   RGM
Sbjct: 1  MKGTFCCFILTLQIACSCWVSAATRPFAPNHALPLLPHKQGLISGSFDSKEGFEAVNRGM 60

Query: 61 RKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH 83
          R+IGSSPPSC+HKCYGC PCEAIQVP TT+R SH
Sbjct: 61 REIGSSPPSCQHKCYGCSPCEAIQVP-TTSRHSH 93

BLAST of Chy4G073860 vs. NCBI nr
Match: XP_004146810.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >XP_011652341.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >XP_011652342.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >KAE8651286.1 hypothetical protein Csa_001818 [Cucumis sativus])

HSP 1 Score: 175 bits (444), Expect = 6.53e-55
Identity = 80/92 (86.96%), Postives = 82/92 (89.13%), Query Frame = 0

Query: 1  MKGTYWCFIFILQLVCWVSAAARNFAPNPALPPHKQQG----------VQDEEFYRGMRK 60
          MKGTYWCFIFILQLVCWVSAAARNFAPNPALPPHKQQG          V++EEFYRGMRK
Sbjct: 1  MKGTYWCFIFILQLVCWVSAAARNFAPNPALPPHKQQGLIDSKQAVKGVKEEEFYRGMRK 60

Query: 61 IGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH 82
          IGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH
Sbjct: 61 IGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH 92

BLAST of Chy4G073860 vs. NCBI nr
Match: XP_008447616.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >XP_008447617.1 PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >XP_008447618.1 PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >KAA0036717.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo var. makuwa] >TYK03693.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (424), Expect = 7.10e-52
Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = 0

Query: 1  MKGTYWCFIFILQLVCWVSAAARNFAPNPALPPHKQ---------QGVQDEEFYRGMRKI 60
          MKGTYWCFIFILQLVCWVSAAAR FAPNPAL PHKQ         +G+++EEFYRGMRKI
Sbjct: 1  MKGTYWCFIFILQLVCWVSAAARTFAPNPALLPHKQGLIESKQAVKGIKEEEFYRGMRKI 60

Query: 61 GSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH 82
          GSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH
Sbjct: 61 GSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH 91

BLAST of Chy4G073860 vs. NCBI nr
Match: XP_038904354.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 150 bits (380), Expect = 4.24e-45
Identity = 71/96 (73.96%), Postives = 72/96 (75.00%), Query Frame = 0

Query: 1  MKGTYWCFIFILQLVCWVSAAARNFAPNPALPPHKQQG--------------VQDEEFYR 60
          MK TYWCFI ILQL CWVSAAAR FAPN AL PHKQQG              V +E FYR
Sbjct: 1  MKRTYWCFILILQLACWVSAAARTFAPNHALLPHKQQGLISGSLDSKEAGKGVNEEAFYR 60

Query: 61 GMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH 82
          GMRKIGSSPPSCEHKCYGCIPCEAIQVPT TNR SH
Sbjct: 61 GMRKIGSSPPSCEHKCYGCIPCEAIQVPTATNRHSH 96

BLAST of Chy4G073860 vs. NCBI nr
Match: XP_023526549.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117 bits (292), Expect = 9.84e-32
Identity = 63/98 (64.29%), Postives = 65/98 (66.33%), Query Frame = 0

Query: 1  MKGTYWC---FIFILQLVCWVSAAARNFAPNPALPPHKQQG-------------VQDEEF 60
          MKGTY C   FI  LQL CWVSAA   FA    L PHKQQG             V++ E 
Sbjct: 1  MKGTYCCCCCFILTLQLACWVSAATTTFA----LLPHKQQGFNVDSVKAVEEGVVKEGEV 60

Query: 61 YRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH 82
          YRGMRKIGSSPPSCEHKCYGC PCEAIQVPT  NRRSH
Sbjct: 61 YRGMRKIGSSPPSCEHKCYGCTPCEAIQVPTN-NRRSH 93

BLAST of Chy4G073860 vs. NCBI nr
Match: XP_022980756.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita maxima])

HSP 1 Score: 116 bits (291), Expect = 1.40e-31
Identity = 63/98 (64.29%), Postives = 65/98 (66.33%), Query Frame = 0

Query: 1  MKGTYWC---FIFILQLVCWVSAAARNFAPNPALPPHKQQG-------------VQDEEF 60
          MKGTY C   FI  LQL CWVSAA   FA    L PHKQQG             V++ E 
Sbjct: 1  MKGTYCCCCCFILTLQLACWVSAATTTFA----LLPHKQQGFNFDSVKAVEEGVVKEGEV 60

Query: 61 YRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH 82
          YRGMRKIGSSPPSCEHKCYGC PCEAIQVPT  NRRSH
Sbjct: 61 YRGMRKIGSSPPSCEHKCYGCSPCEAIQVPTN-NRRSH 93

BLAST of Chy4G073860 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). )

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-09
Identity = 30/78 (38.46%), Postives = 43/78 (55.13%), Query Frame = 0

Query: 8  FIFILQLVCWVS-------AAARNFAPNPALPPHKQQGVQDEEFYRGMRKIGSSPPSCEH 67
          F F+  ++ ++         AA   +    L P++ +    EE  +  R+IGS PPSCE 
Sbjct: 11 FFFVFPIIIYIGPAEIIKPQAAEENSRRRILNPNENK----EEIVKRRRRIGSKPPSCEK 70

Query: 68 KCYGCIPCEAIQVPTTTN 79
          KCYGC PCEAIQ PT ++
Sbjct: 71 KCYGCEPCEAIQFPTISS 84

BLAST of Chy4G073860 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 2.5e-05
Identity = 22/51 (43.14%), Postives = 28/51 (54.90%), Query Frame = 0

Query: 29 PALPPHKQQGVQDEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNR 80
          P  PP   Q    E+      ++GS+PPSC ++C  C PC AIQVPT   R
Sbjct: 30 PIQPPISPQVALIED----KARLGSTPPSCHNRCNNCHPCMAIQVPTLPTR 76

BLAST of Chy4G073860 vs. TAIR 10
Match: AT4G37810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 26/61 (42.62%), Postives = 31/61 (50.82%), Query Frame = 0

Query: 24 NFAPNPALPPHKQQGVQD-EEFYRGMRKIGSSPPSCEH-KCYGCIPCEAIQVPTTTNRRS 83
          N  P P      + G QD +   RG+  IGS PP CE  +C  C  CEAIQVPT    + 
Sbjct: 27 NGRPEPDSVEFTKSGDQDVKMMMRGL--IGSRPPRCERVRCRSCGHCEAIQVPTNPQTKL 85

BLAST of Chy4G073860 vs. TAIR 10
Match: AT2G30370.1 (allergen-related )

HSP 1 Score: 41.6 bits (96), Expect = 3.6e-04
Identity = 16/35 (45.71%), Postives = 22/35 (62.86%), Query Frame = 0

Query: 40  QDEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVP 75
           ++ E  R +R +GSSPP C  KC  C PC+ + VP
Sbjct: 169 KEAELRRILRGLGSSPPRCSSKCGRCTPCKPVHVP 203

BLAST of Chy4G073860 vs. TAIR 10
Match: AT2G30370.2 (allergen-related )

HSP 1 Score: 41.6 bits (96), Expect = 3.6e-04
Identity = 16/35 (45.71%), Postives = 22/35 (62.86%), Query Frame = 0

Query: 40  QDEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVP 75
           ++ E  R +R +GSSPP C  KC  C PC+ + VP
Sbjct: 95  KEAELRRILRGLGSSPPRCSSKCGRCTPCKPVHVP 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
C4B8C41.8e-0838.46EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q9LFT53.5e-0443.14EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Match NameE-valueIdentityDescription
A0A1S3BIS63.9e-3883.52Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103490030... [more]
A0A5D3BVF63.9e-3883.52Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A6J1IUG91.0e-2264.29Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1GTM41.7e-2264.29Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1DIF61.5e-2164.89Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC11... [more]
Match NameE-valueIdentityDescription
XP_004146810.16.53e-5586.96EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >XP_011652341.1 EPI... [more]
XP_008447616.17.10e-5283.52PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >XP_0084476... [more]
XP_038904354.14.24e-4573.96EPIDERMAL PATTERNING FACTOR-like protein 3 isoform X1 [Benincasa hispida][more]
XP_023526549.19.84e-3264.29EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita pepo subsp. pepo][more]
XP_022980756.11.40e-3164.29EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT3G13898.11.3e-0938.46unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot... [more]
AT5G10310.12.5e-0543.14unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G37810.11.2e-0442.62unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G30370.13.6e-0445.71allergen-related [more]
AT2G30370.23.6e-0445.71allergen-related [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF17181EPFcoord: 50..76
e-value: 7.7E-11
score: 41.8
NoneNo IPR availablePANTHERPTHR33109:SF14EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 3coord: 1..78
IPR039455EPIDERMAL PATTERNING FACTOR-like proteinPANTHERPTHR33109EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G073860.1Chy4G073860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010052 guard cell differentiation
biological_process GO:0010374 stomatal complex development
cellular_component GO:0005576 extracellular region