Chy4G073860 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAGGAACATACTGGTGTTTTATATTTATTCTGCAATTAGTCTGTTGGGTTTCTGCTGCAGCCAGAAATTTTGCTCCAAATCCTGCCCTCCCTCCTCATAAACAACAAGGTTTGTTTCTTACCAATATACTCACATCTTTTCTTTGGCTTTCTCATCTCAATTATTACATCTATTTAGCAATAGGTTTTCTTCTTCTTTCACTGCCTTTTTAATTCAAGTTGCTTGTTGTTTTGTTCCTGCCAGGTCTTATTGATTCAAAACAGGTCAGACCCCTACCCTTTTTGTCACTTTATATGTGCTCTGTTTGTTGAAATAATTCATGTTTTTGGTCTGTATAAAGTCTGTTAAAGGTGTTCAAGATGAAGAATTCTATAGAGGGATGAGGAAAATAGGGTCAAGTCCACCCAGCTGTGAGCATAAGTGCTATGGATGCATTCCATGTGAAGCCATTCAAGTGCCTACAACCACCAACAGGCGCAGCCAC ATGAAAGGAACATACTGGTGTTTTATATTTATTCTGCAATTAGTCTGTTGGGTTTCTGCTGCAGCCAGAAATTTTGCTCCAAATCCTGCCCTCCCTCCTCATAAACAACAAGGTGTTCAAGATGAAGAATTCTATAGAGGGATGAGGAAAATAGGGTCAAGTCCACCCAGCTGTGAGCATAAGTGCTATGGATGCATTCCATGTGAAGCCATTCAAGTGCCTACAACCACCAACAGGCGCAGCCAC ATGAAAGGAACATACTGGTGTTTTATATTTATTCTGCAATTAGTCTGTTGGGTTTCTGCTGCAGCCAGAAATTTTGCTCCAAATCCTGCCCTCCCTCCTCATAAACAACAAGGTGTTCAAGATGAAGAATTCTATAGAGGGATGAGGAAAATAGGGTCAAGTCCACCCAGCTGTGAGCATAAGTGCTATGGATGCATTCCATGTGAAGCCATTCAAGTGCCTACAACCACCAACAGGCGCAGCCAC MKGTYWCFIFILQLVCWVSAAARNFAPNPALPPHKQQGVQDEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH Homology
BLAST of Chy4G073860 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 1.8e-08 Identity = 30/78 (38.46%), Postives = 43/78 (55.13%), Query Frame = 0
BLAST of Chy4G073860 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 3.5e-04 Identity = 22/51 (43.14%), Postives = 28/51 (54.90%), Query Frame = 0
BLAST of Chy4G073860 vs. ExPASy TrEMBL
Match: A0A1S3BIS6 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103490030 PE=3 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.9e-38 Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = 0
BLAST of Chy4G073860 vs. ExPASy TrEMBL
Match: A0A5D3BVF6 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00550 PE=3 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.9e-38 Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = 0
BLAST of Chy4G073860 vs. ExPASy TrEMBL
Match: A0A6J1IUG9 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111480029 PE=3 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 1.0e-22 Identity = 63/98 (64.29%), Postives = 65/98 (66.33%), Query Frame = 0
BLAST of Chy4G073860 vs. ExPASy TrEMBL
Match: A0A6J1GTM4 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111457464 PE=3 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 1.7e-22 Identity = 63/98 (64.29%), Postives = 64/98 (65.31%), Query Frame = 0
BLAST of Chy4G073860 vs. ExPASy TrEMBL
Match: A0A6J1DIF6 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111020335 PE=3 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21 Identity = 61/94 (64.89%), Postives = 66/94 (70.21%), Query Frame = 0
BLAST of Chy4G073860 vs. NCBI nr
Match: XP_004146810.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >XP_011652341.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >XP_011652342.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >KAE8651286.1 hypothetical protein Csa_001818 [Cucumis sativus]) HSP 1 Score: 175 bits (444), Expect = 6.53e-55 Identity = 80/92 (86.96%), Postives = 82/92 (89.13%), Query Frame = 0
BLAST of Chy4G073860 vs. NCBI nr
Match: XP_008447616.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >XP_008447617.1 PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >XP_008447618.1 PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >KAA0036717.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo var. makuwa] >TYK03693.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo var. makuwa]) HSP 1 Score: 167 bits (424), Expect = 7.10e-52 Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = 0
BLAST of Chy4G073860 vs. NCBI nr
Match: XP_038904354.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 isoform X1 [Benincasa hispida]) HSP 1 Score: 150 bits (380), Expect = 4.24e-45 Identity = 71/96 (73.96%), Postives = 72/96 (75.00%), Query Frame = 0
BLAST of Chy4G073860 vs. NCBI nr
Match: XP_023526549.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 117 bits (292), Expect = 9.84e-32 Identity = 63/98 (64.29%), Postives = 65/98 (66.33%), Query Frame = 0
BLAST of Chy4G073860 vs. NCBI nr
Match: XP_022980756.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita maxima]) HSP 1 Score: 116 bits (291), Expect = 1.40e-31 Identity = 63/98 (64.29%), Postives = 65/98 (66.33%), Query Frame = 0
BLAST of Chy4G073860 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). ) HSP 1 Score: 59.7 bits (143), Expect = 1.3e-09 Identity = 30/78 (38.46%), Postives = 43/78 (55.13%), Query Frame = 0
BLAST of Chy4G073860 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 45.4 bits (106), Expect = 2.5e-05 Identity = 22/51 (43.14%), Postives = 28/51 (54.90%), Query Frame = 0
BLAST of Chy4G073860 vs. TAIR 10
Match: AT4G37810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04 Identity = 26/61 (42.62%), Postives = 31/61 (50.82%), Query Frame = 0
BLAST of Chy4G073860 vs. TAIR 10
Match: AT2G30370.1 (allergen-related ) HSP 1 Score: 41.6 bits (96), Expect = 3.6e-04 Identity = 16/35 (45.71%), Postives = 22/35 (62.86%), Query Frame = 0
BLAST of Chy4G073860 vs. TAIR 10
Match: AT2G30370.2 (allergen-related ) HSP 1 Score: 41.6 bits (96), Expect = 3.6e-04 Identity = 16/35 (45.71%), Postives = 22/35 (62.86%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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