Chy4G073030 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G073030
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Small nuclear ribonucleoprotein Sm D1
Location	chrH04: 6428685 .. 6431839 (-)
RNA-Seq Expression	Chy4G073030
Synteny	Chy4G073030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTTGTTAGGTATCTTCTTCTCTTTTTCTATTTTTGCCCTCTTTTTCTTCTCGATCTACATCTATATGCCCTTTTTCATTTTTAAAATCTTGGTTTTCATACAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACCATCACAGGTCTTTCTACCTCTCTTTCTTTAAATCTTGTTAAACCCTAGATTTACCAACTTTGCGGCTCAGGGTTCTTTAACTTCCAACTTCTGTTCTATTTTCTTCTTTGAACTTAACTGCATTGGAATTTGTACAACATTTCAGTATGTTCTCCAGTGTACAACTCTCACTACTATTGCTTTCGTCTCACTTCCATCTCCCGACCTTTGAAAGCTAACGAAAGGGTTCTTTATCCCGCTCCCATTTTTAATTTTAAAAATTAGTATTCAACTTATGGGTTGCTTACGGCAAATTAAATTCCTTGTCTTCTGGACGTTGGGAGGATGAGATGTTTTTCTCTGTATTGTTTTTATTTTTATTATTTTCATTTTCAAAATAATTTGAACTTTTGATTACTCTCTACTGATGCTGAATATGCATTCTATTTCCTGACATATCTGTAGATTTAAACAAATGTTTAAAATGTCCCGACATTTTTTCATGGAATGACTCCTACAATTCATTCTTTCCCATTTGATTTGATGGAATTGTTTCTTCAACCGAGTGAATATACTTCTTTTTTTTTTTTTTTTTTGAAACGGAAACAAACCAAGTGAATATACTTCTACAATCAACTTGAGGTGAGAAACCTGCACTAGAATGATGTTACGTTAGTCTGATTAAGCATGAACTTCTGCTGAACCCCAGCATTTTTGGACTCGGTAGCCCATATGCCATCTTTGGTTAATTATATGTGTGTGTTTTTAATTTTGTTTTGCATAAGAGACTATGCAATAACCGAAAGAGAAGCAACTTGTAACTTGAACTGTGCCCAGTGGTGGAAACATAGTCAATTGAGCAGTCGCAAATTATATGCGCCTTTGTCCTCCTACACTGCCTCTAACTACATGAGCTATTTTTAACCTTCCCTGGAATAGCAATAACTTAGTCTTGATTAATAAAAACTTCTTCTGAACTCCATTATTTTTGGGTTCTGTAGCCCATTGGCCATTCTTACATGAATTTTTACCCTTTTTTATCTTCTGGTGAGAGACTATGTTACAAGTGAAGCAAAAAGTCTAACCTAGGTTTCTTCTATTTGAAAAACTATCGTAAAAATGTGTATGGTACACTATTAAAAATAGAATCTAAAATAGATACTTTTTCTCAAAATATTTATAGAAGTAGTAGTGCAGATTTTATTTTACATCTAACATATCGGGCTGTGAATCTTTTGAAAAATAATTGTAACCCAAGCTAGTTAGGCAAAAGATAAACCAGTTTGTTGAAAATGAAAGACCATCCTCTATAGACAAAAGGATAGTGGAGGTAAAGGTAATTTTGGGATTCCCCAATGGAATAATAGAGGAACAAACCAGGTGAGACAACCCAGTTTGGGAACTCTTTTTCTAGATTCTCTCGGGGGGTTGAGGTTTCTATTAGTAGCCAACCTCACAAACATCTTAACCTTCCTAGGGGTGTCAAACATCCAATTTGACCTTACAAAGGCGTTTTCAGCTTTAGCAAGGTCTCAGAGAGTTTAGTGAAGGTGATCTTAGACGACAAACAATTTAATGAATCAATGGATTCTACCTCTATGTCTTGGTCAGCTTCTAATTGAAAAGTATCGATCTTTCCTATAAAGGCAATTCAACATTCCAATTTCCCTGTGAAAAGAGCCAACAAGCATTCCACATTTATCCCCCAGACTACCTATGGTTTTGGTTTCATTGTCGTTGTTTCTGGTTCTAGATGATCACTTTTCACAACTGTTTAAGAAGTAGTGCATTATTTATCTACTTACAAAAAGAGCAGACCAATGGAAGGGAAGTCCAGCTCCATTTTAATGGGTGACTTAGGATTTGGTGAATTATGACTAGTTTGCATTTTGTTGTTGACAACCCCCTAACATCTTCCACTTAATGTATTTTTCTATGCTGCTGCTACTGAAACTAGTTATTTACCGGCAGATTTTTTTCTCACAAGGAGTTGTAACAGAAGAGTTGAGACTCTTTCATAACTTATGACTCATAATTTTAGTTGGTTACCTCTTTTGTTGGAGAATTTCAGTTGAGATTATACGCAATTTTTTAAAAGGCTAAAGGCAGCCTCTTCCAGCATAGCCTCAAGGTGAGGTGTTATGAGTTGTAAGTTTCGTTGGTTAAAAATATTTTACCAAGTATTGTTAGGCAACACTTAATAATCATGTAAAAGTTAATAAAAAAAAGAAGGAAAATCACTCTTCCCAATTTCCACCTAGACAGAAGTTCTAAAATGATATCTTTAACTTTACTAATATTATTTGATTGACATATCCCAGAAATATTAGATTGTGACAAATTAATATTATTCAATAAATTATTACAAAGAGGTGTAAGTTTTCTCTATGTATGCAATATGCTTGATGACCTACATTGCACTTTGCCTTGTGAAATCTTGTTTTTGACTATGATATGTTAATCAATGATTTGTTTTAAAAAAATTCAATGACATCTCATGAACTTAAAGTAGAAGTACGCACTCTTTTCTCTTAAAACCTAAGTATTGGTCAAGGTTAGAGGTCGCTGATGGGTTGATTTTGAGTGTTTTTCTTGTATTACTTAGGTGTGGATATCAGCATGAATACGCATTTGAAGGCTGTGAAGCTAACTCTAAAGGGAAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAACATCAGATATTATATCCTACCTGACAGCTTGAATCTTGAAACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAAAAACCAACTGCAGGTTTGTGTTCTTGCATTCTGGCCTGTACTTTATGGTTATTTTCTGCTGCAAGTCCAATTGTTTATACTGAATCATATCATTTGCTACTCATTATCAAATGTATTGCTTATCCATTTCTACACTCTACTCCAACTACAGGGAGGCCTTTGGGGCGGGGACGAGGGCGCGGCCGTGGACGTGGTCGTGGACGTGGACGCTAG

mRNA sequence

ATGAAGCTTGTTAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACCATCACAGGTGTGGATATCAGCATGAATACGCATTTGAAGGCTGTGAAGCTAACTCTAAAGGGAAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAACATCAGATATTATATCCTACCTGACAGCTTGAATCTTGAAACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAAAAACCAACTGCAGGTTTGTGTTCTTGCATTCTGGCCTGTACTTTATGGTTATTTTCTGCTGCAAGTCCAATTGTTTATACTGAATCATATCATTTGCTACTCATTATCAAATGTATTGCTTATCCATTTCTACACTCTACTCCAACTACAGGGAGGCCTTTGGGGCGGGGACGAGGGCGCGGCCGTGGACGTGGTCGTGGACGTGGACGCTAG

Coding sequence (CDS)

ATGAAGCTTGTTAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACCATCACAGGTGTGGATATCAGCATGAATACGCATTTGAAGGCTGTGAAGCTAACTCTAAAGGGAAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAACATCAGATATTATATCCTACCTGACAGCTTGAATCTTGAAACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAAAAACCAACTGCAGGTTTGTGTTCTTGCATTCTGGCCTGTACTTTATGGTTATTTTCTGCTGCAAGTCCAATTGTTTATACTGAATCATATCATTTGCTACTCATTATCAAATGTATTGCTTATCCATTTCTACACTCTACTCCAACTACAGGGAGGCCTTTGGGGCGGGGACGAGGGCGCGGCCGTGGACGTGGTCGTGGACGTGGACGCTAG

Protein sequence

MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESYHLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRGR*

Homology

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BLAST of Chy4G073030 vs. ExPASy Swiss-Prot
Match: Q9SY09 (Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.7e-47
Identity = 106/159 (66.67%), Postives = 111/159 (69.81%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESY 120
           RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG                         
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKI----------------------- 114

Query: 121 HLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRG 160
                                 P GRGRGRGRGRGRGRG
Sbjct: 121 ----------------------PAGRGRGRGRGRGRGRG 114

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BLAST of Chy4G073030 vs. ExPASy Swiss-Prot
Match: Q9SSF1 (Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-45
Identity = 103/160 (64.38%), Postives = 111/160 (69.38%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESY 120
           RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP A                          
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVA-------------------------- 114

Query: 121 HLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRGR 161
                               G+ +GRGRGRGRGRGRGRGR
Sbjct: 121 --------------------GKAVGRGRGRGRGRGRGRGR 114

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BLAST of Chy4G073030 vs. ExPASy Swiss-Prot
Match: Q3ZC10 (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.8e-35
Identity = 87/159 (54.72%), Postives = 100/159 (62.89%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESY 120
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A                          
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA-------------------------- 115

Query: 121 HLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRG 160
                               GR  GRGRGRGRGRGRGRG
Sbjct: 121 ------------------VAGRGRGRGRGRGRGRGRGRG 115

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BLAST of Chy4G073030 vs. ExPASy Swiss-Prot
Match: P62314 (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.8e-35
Identity = 87/159 (54.72%), Postives = 100/159 (62.89%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESY 120
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A                          
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA-------------------------- 115

Query: 121 HLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRG 160
                               GR  GRGRGRGRGRGRGRG
Sbjct: 121 ------------------VAGRGRGRGRGRGRGRGRGRG 115

[Close]

BLAST of Chy4G073030 vs. ExPASy Swiss-Prot
Match: Q4R5F6 (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.8e-35
Identity = 87/159 (54.72%), Postives = 100/159 (62.89%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESY 120
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A                          
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA-------------------------- 115

Query: 121 HLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRG 160
                               GR  GRGRGRGRGRGRGRG
Sbjct: 121 ------------------VAGRGRGRGRGRGRGRGRGRG 115

[Close]

BLAST of Chy4G073030 vs. ExPASy TrEMBL
Match: A0A287U5P3 (Small nuclear ribonucleoprotein Sm D1 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 9.2e-52
Identity = 120/160 (75.00%), Postives = 128/160 (80.00%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETV+IELKNGT VHGTI GVDISMNTHLK VKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVTIELKNGTTVHGTIIGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESY 120
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGL   ILA    LFS  S + ++E  
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGL---ILASFCVLFSLLSLVPFSE-- 120

Query: 121 HLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRGR 161
                     + FLH     G+P+GRGRGRGRGRGRGRGR
Sbjct: 121 ----------HSFLHL--NAGKPMGRGRGRGRGRGRGRGR 143

[Close]

BLAST of Chy4G073030 vs. ExPASy TrEMBL
Match: A0A453C6T0 (Small nuclear ribonucleoprotein Sm D1 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 8.1e-48
Identity = 109/160 (68.12%), Postives = 125/160 (78.12%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETV+IELKNGT VHGTITGVDISMNTHLK VKLT+KGKNPVT+DH+SV
Sbjct: 1   MKLVRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTMKGKNPVTLDHISV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESY 120
           RGNNIRYYILPDSLNLETLLVE+TPRVK KKPT G            + + S + + ++ 
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKSKKPTTG---------TQFYHSCSKVSFHKN- 120

Query: 121 HLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRGR 161
                 K I+ PF+     +G+P+GRGRGRGRGRGRGRGR
Sbjct: 121 -----CKLISLPFV-----SGKPMGRGRGRGRGRGRGRGR 140

[Close]

BLAST of Chy4G073030 vs. ExPASy TrEMBL
Match: A0A1J7H1Z4 (Small nuclear ribonucleoprotein Sm D1 OS=Lupinus angustifolius OX=3871 GN=TanjilG_11475 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.1e-47
Identity = 109/155 (70.32%), Postives = 120/155 (77.42%), Query Frame = 0


Query: 5   RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNN 64
           RFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLK VKLT+KGKNPVT+DHLSVRGNN
Sbjct: 33  RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTVKGKNPVTLDHLSVRGNN 92

Query: 65  IRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESYHLLL 124
           IRYYILPDSLNLETLLVEETPRVKPKKPTAG+   +    +         +Y +  + L+
Sbjct: 93  IRYYILPDSLNLETLLVEETPRVKPKKPTAGILHYLTVAAIVFIHR----LYVQLDYYLV 152

Query: 125 IIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRG 160
               I  P        G+PLGRGRGRGRGRGRGRG
Sbjct: 153 FNAFILIP--------GKPLGRGRGRGRGRGRGRG 175

[Close]

BLAST of Chy4G073030 vs. ExPASy TrEMBL
Match: A0A6J1DVC4 (Small nuclear ribonucleoprotein Sm D1 OS=Momordica charantia OX=3673 GN=LOC111024391 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.4e-47
Identity = 114/160 (71.25%), Postives = 114/160 (71.25%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESY 120
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA                          
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA-------------------------- 114

Query: 121 HLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRGR 161
                               GRPLGRGRGRGRGRGRGRGR
Sbjct: 121 --------------------GRPLGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Chy4G073030 vs. ExPASy TrEMBL
Match: M8AUD7 (Small nuclear ribonucleoprotein Sm D1 OS=Triticum urartu OX=4572 GN=TRIUR3_26470 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.4e-47
Identity = 111/160 (69.38%), Postives = 119/160 (74.38%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETV+IELKNGT VHGTI GVDISMNTHLK VKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVTIELKNGTTVHGTIIGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESY 120
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA                          
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA-------------------------V 120

Query: 121 HLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRGR 161
           ++L +     +PFLH     G+P+GRGR RGRGRGRGRGR
Sbjct: 121 YVLSLAPFSEHPFLHL--DAGKPMGRGRSRGRGRGRGRGR 133

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BLAST of Chy4G073030 vs. NCBI nr
Match: XP_004150106.1 (small nuclear ribonucleoprotein SmD1b [Cucumis sativus] >XP_008454659.1 PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis melo] >XP_022155676.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157762.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157763.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_038896755.1 small nuclear ribonucleoprotein SmD1b isoform X1 [Benincasa hispida] >XP_038897023.1 small nuclear ribonucleoprotein SmD1b isoform X1 [Benincasa hispida] >KGN59890.1 hypothetical protein Csa_002314 [Cucumis sativus])

HSP 1 Score: 199 bits (505), Expect = 7.46e-63
Identity = 114/160 (71.25%), Postives = 114/160 (71.25%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESY 120
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG                         
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG------------------------- 114

Query: 121 HLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRGR 160
                                RPLGRGRGRGRGRGRGRGR
Sbjct: 121 ---------------------RPLGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Chy4G073030 vs. NCBI nr
Match: XP_022931093.1 (small nuclear ribonucleoprotein SmD1b [Cucurbita moschata] >XP_022995872.1 small nuclear ribonucleoprotein SmD1b [Cucurbita maxima] >XP_023533992.1 small nuclear ribonucleoprotein SmD1b [Cucurbita pepo subsp. pepo] >KAG7036369.1 Small nuclear ribonucleoprotein SmD1b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197 bits (502), Expect = 2.13e-62
Identity = 113/160 (70.62%), Postives = 114/160 (71.25%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESY 120
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG                         
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG------------------------- 114

Query: 121 HLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRGR 160
                                +PLGRGRGRGRGRGRGRGR
Sbjct: 121 ---------------------KPLGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Chy4G073030 vs. NCBI nr
Match: KAG6494367.1 (hypothetical protein ZIOFF_049392 [Zingiber officinale])

HSP 1 Score: 198 bits (504), Expect = 2.89e-62
Identity = 117/160 (73.12%), Postives = 125/160 (78.12%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL NETVSIELKNGTVVHGTI GVDISMNTHLK VKLT+KGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLTNETVSIELKNGTVVHGTIIGVDISMNTHLKTVKLTVKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESY 120
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG+  C+ A        A  +V  +S 
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGML-CVYA------FHARVLVQNQS- 120

Query: 121 HLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRGR 160
                 K  +Y  L +    GR LGRGRGRGRGRGRGRGR
Sbjct: 121 ------KFTSYSGLCNRKP-GRALGRGRGRGRGRGRGRGR 145

[Close]

BLAST of Chy4G073030 vs. NCBI nr
Match: XP_022963993.1 (small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] >XP_023553601.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita pepo subsp. pepo] >KAG7011241.1 Small nuclear ribonucleoprotein SmD1b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197 bits (500), Expect = 4.31e-62
Identity = 112/160 (70.00%), Postives = 114/160 (71.25%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESY 120
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG                         
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG------------------------- 114

Query: 121 HLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRGR 160
                                +P+GRGRGRGRGRGRGRGR
Sbjct: 121 ---------------------KPMGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Chy4G073030 vs. NCBI nr
Match: GFP82007.1 (small nuclear ribonucleoprotein sm d1 [Phtheirospermum japonicum])

HSP 1 Score: 196 bits (499), Expect = 6.11e-62
Identity = 112/160 (70.00%), Postives = 113/160 (70.62%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESY 120
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG                         
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG------------------------- 114

Query: 121 HLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRGR 160
                                RP+GRGRGRGRGRGRGRGR
Sbjct: 121 ---------------------RPIGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Chy4G073030 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 190.3 bits (482), Expect = 1.2e-48
Identity = 106/159 (66.67%), Postives = 111/159 (69.81%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESY 120
           RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG                         
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKI----------------------- 114

Query: 121 HLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRG 160
                                 P GRGRGRGRGRGRGRG
Sbjct: 121 ----------------------PAGRGRGRGRGRGRGRG 114

[Close]

BLAST of Chy4G073030 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 184.1 bits (466), Expect = 8.8e-47
Identity = 103/160 (64.38%), Postives = 111/160 (69.38%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESY 120
           RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP A                          
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVA-------------------------- 114

Query: 121 HLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRGR 161
                               G+ +GRGRGRGRGRGRGRGR
Sbjct: 121 --------------------GKAVGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Chy4G073030 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 184.1 bits (466), Expect = 8.8e-47
Identity = 103/160 (64.38%), Postives = 111/160 (69.38%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSAASPIVYTESY 120
           RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP A                          
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVA-------------------------- 114

Query: 121 HLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRGR 161
                               G+ +GRGRGRGRGRGRGRGR
Sbjct: 121 --------------------GKAVGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Chy4G073030 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 182.2 bits (461), Expect = 3.3e-46
Identity = 106/169 (62.72%), Postives = 111/169 (65.68%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGK 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTIT          GVD+SMNTHLKAVKLTLKGK
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGK 60

Query: 61  NPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGLCSCILACTLWLFSA 120
           NPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG               
Sbjct: 61  NPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKI------------- 120

Query: 121 ASPIVYTESYHLLLIIKCIAYPFLHSTPTTGRPLGRGRGRGRGRGRGRG 160
                                           P GRGRGRGRGRGRGRG
Sbjct: 121 --------------------------------PAGRGRGRGRGRGRGRG 124

[Close]

BLAST of Chy4G073030 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.4e-06
Identity = 23/93 (24.73%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 4   VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGN 63
           V+ L + +   V++ELK+G +  G++   + + N  L+ +  T K      ++H+ +RG+
Sbjct: 9   VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGS 68

Query: 64  NIRYYILPDSLNLETLLVEETPRVKPKKPTAGL 97
            +R+ ++PD L    +      R+K K  + G+
Sbjct: 69  KVRFMVIPDILKHAPMFKRLDARIKGKSSSLGV 101

The following BLAST results are available for this feature:

BLAST of Chy4G073030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SY09	1.7e-47	66.67	Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B P...	[more]
Q9SSF1	1.2e-45	64.38	Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A P...	[more]
Q3ZC10	9.8e-35	54.72	Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1	[more]
P62314	9.8e-35	54.72	Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=...	[more]
Q4R5F6	9.8e-35	54.72	Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 P...	[more]

BLAST of Chy4G073030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A287U5P3	9.2e-52	75.00	Small nuclear ribonucleoprotein Sm D1 OS=Hordeum vulgare subsp. vulgare OX=11250...	[more]
A0A453C6T0	8.1e-48	68.13	Small nuclear ribonucleoprotein Sm D1 OS=Aegilops tauschii subsp. strangulata OX...	[more]
A0A1J7H1Z4	1.1e-47	70.32	Small nuclear ribonucleoprotein Sm D1 OS=Lupinus angustifolius OX=3871 GN=Tanjil...	[more]
A0A6J1DVC4	1.4e-47	71.25	Small nuclear ribonucleoprotein Sm D1 OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
M8AUD7	1.4e-47	69.38	Small nuclear ribonucleoprotein Sm D1 OS=Triticum urartu OX=4572 GN=TRIUR3_26470...	[more]

BLAST of Chy4G073030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150106.1	7.46e-63	71.25	small nuclear ribonucleoprotein SmD1b [Cucumis sativus] >XP_008454659.1 PREDICTE...	[more]
XP_022931093.1	2.13e-62	70.63	small nuclear ribonucleoprotein SmD1b [Cucurbita moschata] >XP_022995872.1 small...	[more]
KAG6494367.1	2.89e-62	73.13	hypothetical protein ZIOFF_049392 [Zingiber officinale]	[more]
XP_022963993.1	4.31e-62	70.00	small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] >XP_023553601.1 ...	[more]
GFP82007.1	6.11e-62	70.00	small nuclear ribonucleoprotein sm d1 [Phtheirospermum japonicum]	[more]

BLAST of Chy4G073030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02840.1	1.2e-48	66.67	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.1	8.8e-47	64.38	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.2	8.8e-47	64.38	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.2	3.3e-46	62.72	Small nuclear ribonucleoprotein family protein	[more]
AT1G20580.1	3.4e-06	24.73	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..70 e-value: 1.1E-16 score: 71.5
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 5..69 e-value: 9.3E-18 score: 63.7
None	No IPR available	GENE3D	2.30.30.100		coord: 1..49 e-value: 4.7E-19 score: 70.5 coord: 50..82 e-value: 3.5E-11 score: 45.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..160
None	No IPR available	PANTHER	PTHR23338:SF53	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1	coord: 1..95
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 1..95
IPR034102	Small nuclear ribonucleoprotein D1	CDD	cd01724	Sm_D1	coord: 2..93 e-value: 3.99802E-62 score: 184.351
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 4..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G073030.1	Chy4G073030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
biological_process	GO:0000387	spliceosomal snRNP assembly
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0000243	commitment complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0034715	pICln-Sm protein complex
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0034719	SMN-Sm protein complex
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0005682	U5 snRNP
molecular_function	GO:0003723	RNA binding