Chy4G072960 (gene) Cucumber (hystrix) v1

Overview
NameChy4G072960
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionMitochondrial protein YMF19
LocationchrH04: 6275666 .. 6275848 (-)
RNA-Seq ExpressionChy4G072960
SyntenyChy4G072960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGGAGTACTTGGGATCAGCAGAATTCTCAAACTACGGAACCAACTGGTTTCACACCGGGGAAGAACATACGGAGCAAGGACCCAACAGTTTGGAGGATCTTTTGAGAAAAGGCCGTTTTAGCACCGTTGTAAACCGTATGTACTCTAGTTTCAAAGAAGTATCCCAATGGTGTAAG

mRNA sequence

ATGGAGATGGAGTACTTGGGATCAGCAGAATTCTCAAACTACGGAACCAACTGGTTTCACACCGGGGAAGAACATACGGAGCAAGGACCCAACAGTTTGGAGGATCTTTTGAGAAAAGGCCGTTTTAGCACCGTTGTAAACCGTATGTACTCTAGTTTCAAAGAAGTATCCCAATGGTGTAAG

Coding sequence (CDS)

ATGGAGATGGAGTACTTGGGATCAGCAGAATTCTCAAACTACGGAACCAACTGGTTTCACACCGGGGAAGAACATACGGAGCAAGGACCCAACAGTTTGGAGGATCTTTTGAGAAAAGGCCGTTTTAGCACCGTTGTAAACCGTATGTACTCTAGTTTCAAAGAAGTATCCCAATGGTGTAAG

Protein sequence

MEMEYLGSAEFSNYGTNWFHTGEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWCK
Homology
[Close]
BLAST of Chy4G072960 vs. ExPASy Swiss-Prot
Match: P93303 (ATP synthase protein YMF19 OS=Arabidopsis thaliana OX=3702 GN=YMF19 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.6e-06
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 20 HTGEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWCK 62
          H G+    + PNSLEDLLRKG FST V+ MY+S  EVSQWCK
Sbjct: 50 HRGKTIRSKDPNSLEDLLRKG-FSTGVSYMYASLFEVSQWCK 90

[Close]
BLAST of Chy4G072960 vs. ExPASy Swiss-Prot
Match: Q03152 (Putative ATP synthase protein YMF19 OS=Brassica napus OX=3708 GN=YMF19 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.6e-06
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 20 HTGEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWCK 62
          H G+    + PNSLEDLLRKG FST V+ MY+S  EVSQWCK
Sbjct: 50 HRGKTIQSKDPNSLEDLLRKG-FSTGVSYMYASLFEVSQWCK 90

[Close]
BLAST of Chy4G072960 vs. ExPASy Swiss-Prot
Match: P08746 (Putative ATP synthase protein YMF19 OS=Oenothera berteroana OX=3950 GN=YMF19 PE=3 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 1.6e-06
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 20 HTGEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWCK 62
          H G+    + PNSLE+LLRKG FST V+ MYSS  EVSQWCK
Sbjct: 50 HRGKNILRKDPNSLEELLRKG-FSTGVSYMYSSLFEVSQWCK 90

[Close]
BLAST of Chy4G072960 vs. ExPASy Swiss-Prot
Match: Q06564 (Putative ATP synthase protein YMF19 OS=Raphanus sativus OX=3726 GN=YMF19 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.6e-06
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 20 HTGEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWCK 62
          H G+    + PNSLEDLLRKG FST V+ MY+S  EVSQWCK
Sbjct: 50 HRGKTIQSKDPNSLEDLLRKG-FSTGVSYMYASLFEVSQWCK 90

[Close]
BLAST of Chy4G072960 vs. ExPASy Swiss-Prot
Match: P43650 (Putative ATP synthase protein YMF19 OS=Triticum aestivum OX=4565 GN=YMF19 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 6.2e-06
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 0 

Query: 20 HTGEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWCK 62
          H G E   + P +LED+LRKG FST ++ MYSS  EVSQWCK
Sbjct: 50 HRGGEIRSKDPKNLEDILRKG-FSTGLSYMYSSLSEVSQWCK 90

[Close]
BLAST of Chy4G072960 vs. ExPASy TrEMBL
Match: A0A287TZE9 (DUF1082 domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.3e-08
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 0 

Query: 3  MEYLGSAEFSNYGTNWFH--TGEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWC 62
          MEYL  AEFSNYGTN F    G E   + P +LED+ RKG FST ++ MYS+  EVSQWC
Sbjct: 1  MEYLELAEFSNYGTNCFRAGVGGEIRTKDPKNLEDISRKG-FSTGLSYMYSNLSEVSQWC 60

[Close]
BLAST of Chy4G072960 vs. ExPASy TrEMBL
Match: G3EJ01 (Mitochondrial protein YMF19 OS=Cucumis sativus OX=3659 GN=atp8 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.9e-06
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 20 HTGEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWCK 62
          H G+    + PNSLEDLLRKG FST V+ MYSSFKEVSQWCK
Sbjct: 50 HRGKNIRSKDPNSLEDLLRKG-FSTGVSYMYSSFKEVSQWCK 90

[Close]
BLAST of Chy4G072960 vs. ExPASy TrEMBL
Match: A0A5D3D929 (ATPase subunit 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001780 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 17 NWFHTGEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWCK 62
          N   +G+    + PNSLEDLLRKG FST ++ MYSSFKEVSQWCK
Sbjct: 45 NQLVSGKNIRSKDPNSLEDLLRKG-FSTGISYMYSSFKEVSQWCK 88

[Close]
BLAST of Chy4G072960 vs. ExPASy TrEMBL
Match: G3EU18 (Mitochondrial protein YMF19 OS=Cucumis melo subsp. melo OX=412675 GN=atp8 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 20 HTGEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWCK 62
          H G+    + PNSLED+LRKG FST V+ MYSSFKEVSQWC+
Sbjct: 50 HRGKNIRSKDPNSLEDILRKG-FSTGVSYMYSSFKEVSQWCQ 90

[Close]
BLAST of Chy4G072960 vs. ExPASy TrEMBL
Match: A0A3S9JII4 (Mitochondrial protein YMF19 OS=Cucumis melo var. momordica OX=2034244 GN=atp8 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 20 HTGEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWCK 62
          H G+    + PNSLED+LRKG FST V+ MYSSFKEVSQWC+
Sbjct: 50 HRGKNIRSKDPNSLEDILRKG-FSTGVSYMYSSFKEVSQWCQ 90

[Close]
BLAST of Chy4G072960 vs. NCBI nr
Match: KAE8648252.1 (hypothetical protein Csa_018337 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 5.36e-10
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 20 HTGEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWCK 61
          H G+    + PNSLEDLLRKG FST V+ MYSSFKEVSQWCK
Sbjct: 34 HRGKNIRSKDPNSLEDLLRKG-FSTGVSYMYSSFKEVSQWCK 74

[Close]
BLAST of Chy4G072960 vs. NCBI nr
Match: YP_004849349.1 (ATPase subunit 8 [Cucumis sativus] >ADZ10776.1 ATPase subunit 8 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.41e-09
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 20 HTGEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWCK 61
          H G+    + PNSLEDLLRKG FST V+ MYSSFKEVSQWCK
Sbjct: 50 HRGKNIRSKDPNSLEDLLRKG-FSTGVSYMYSSFKEVSQWCK 90

[Close]
BLAST of Chy4G072960 vs. NCBI nr
Match: KAA0064532.1 (ATPase subunit 8 [Cucumis melo var. makuwa] >TYK20058.1 ATPase subunit 8 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 5.84e-09
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 17 NWFHTGEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWCK 61
          N   +G+    + PNSLEDLLRKG FST ++ MYSSFKEVSQWCK
Sbjct: 45 NQLVSGKNIRSKDPNSLEDLLRKG-FSTGISYMYSSFKEVSQWCK 88

[Close]
BLAST of Chy4G072960 vs. NCBI nr
Match: AEN56101.1 (ATPase subunit 8 [Cucumis melo subsp. melo] >AZP40296.1 ATPase subunit 8 [Cucumis melo var. momordica])

HSP 1 Score: 58.5 bits (140), Expect = 1.10e-08
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 20 HTGEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWCK 61
          H G+    + PNSLED+LRKG FST V+ MYSSFKEVSQWC+
Sbjct: 50 HRGKNIRSKDPNSLEDILRKG-FSTGVSYMYSSFKEVSQWCQ 90

[Close]
BLAST of Chy4G072960 vs. NCBI nr
Match: XP_042043897.1 (LOW QUALITY PROTEIN: putative ATP synthase protein YMF19 [Salvia splendens])

HSP 1 Score: 56.6 bits (135), Expect = 6.07e-08
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 22 GEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWC 60
          G++  EQGPNSLED+LRKG FST V+ MYSS  EVSQWC
Sbjct: 52 GKKIXEQGPNSLEDILRKG-FSTGVSYMYSSLFEVSQWC 89

[Close]
BLAST of Chy4G072960 vs. TAIR 10
Match: AT2G07707.1 (Plant mitochondrial ATPase, F0 complex, subunit 8 protein )

HSP 1 Score: 52.8 bits (125), Expect = 1.2e-07
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 20 HTGEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWCK 62
          H G+    + PNSLEDLLRKG FST V+ MY+S  EVSQWCK
Sbjct: 50 HRGKTIRSKDPNSLEDLLRKG-FSTGVSYMYASLFEVSQWCK 90

[Close]
BLAST of Chy4G072960 vs. TAIR 10
Match: ATMG00480.1 (Plant mitochondrial ATPase, F0 complex, subunit 8 protein )

HSP 1 Score: 52.8 bits (125), Expect = 1.2e-07
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 20 HTGEEHTEQGPNSLEDLLRKGRFSTVVNRMYSSFKEVSQWCK 62
          H G+    + PNSLEDLLRKG FST V+ MY+S  EVSQWCK
Sbjct: 50 HRGKTIRSKDPNSLEDLLRKG-FSTGVSYMYASLFEVSQWCK 90

The following BLAST results are available for this feature:
BLAST of Chy4G072960 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P933031.6e-0664.29ATP synthase protein YMF19 OS=Arabidopsis thaliana OX=3702 GN=YMF19 PE=1 SV=1[more]
Q031521.6e-0664.29Putative ATP synthase protein YMF19 OS=Brassica napus OX=3708 GN=YMF19 PE=3 SV=1[more]
P087461.6e-0664.29Putative ATP synthase protein YMF19 OS=Oenothera berteroana OX=3950 GN=YMF19 PE=... [more]
Q065641.6e-0664.29Putative ATP synthase protein YMF19 OS=Raphanus sativus OX=3726 GN=YMF19 PE=3 SV... [more]
P436506.2e-0659.52Putative ATP synthase protein YMF19 OS=Triticum aestivum OX=4565 GN=YMF19 PE=2 S... [more]
BLAST of Chy4G072960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A287TZE95.3e-0859.02DUF1082 domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE... [more]
G3EJ014.9e-0671.43Mitochondrial protein YMF19 OS=Cucumis sativus OX=3659 GN=atp8 PE=3 SV=1[more]
A0A5D3D9292.4e-0564.44ATPase subunit 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001... [more]
G3EU182.4e-0566.67Mitochondrial protein YMF19 OS=Cucumis melo subsp. melo OX=412675 GN=atp8 PE=3 S... [more]
A0A3S9JII42.4e-0566.67Mitochondrial protein YMF19 OS=Cucumis melo var. momordica OX=2034244 GN=atp8 PE... [more]
BLAST of Chy4G072960 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648252.15.36e-1071.43hypothetical protein Csa_018337 [Cucumis sativus][more]
YP_004849349.11.41e-0971.43ATPase subunit 8 [Cucumis sativus] >ADZ10776.1 ATPase subunit 8 [Cucumis sativus... [more]
KAA0064532.15.84e-0964.44ATPase subunit 8 [Cucumis melo var. makuwa] >TYK20058.1 ATPase subunit 8 [Cucumi... [more]
AEN56101.11.10e-0866.67ATPase subunit 8 [Cucumis melo subsp. melo] >AZP40296.1 ATPase subunit 8 [Cucumi... [more]
XP_042043897.16.07e-0871.79LOW QUALITY PROTEIN: putative ATP synthase protein YMF19 [Salvia splendens][more]
BLAST of Chy4G072960 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G07707.11.2e-0764.29Plant mitochondrial ATPase, F0 complex, subunit 8 protein [more]
ATMG00480.11.2e-0764.29Plant mitochondrial ATPase, F0 complex, subunit 8 protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G072960.1Chy4G072960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006754 ATP biosynthetic process
biological_process GO:1902600 proton transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0005739 mitochondrion
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0015078 proton transmembrane transporter activity