Chy4G072840 (gene) Cucumber (hystrix) v1

Overview
NameChy4G072840
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionStructural maintenance of chromosomes protein
LocationchrH04: 5986523 .. 5986773 (+)
RNA-Seq ExpressionChy4G072840
SyntenyChy4G072840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GATATTGCTAATGCTAAGAAGCATAAACAATCAATTTCCCAAGGCTCGTTGAATAAGGTATCAATTTTCAAGGTTCTAGGTAACTTATTAATCTACCTTGGTTAGATAAAAAAAAATATAGTTCTTCTGTTGATATTTCTTATTCCTGTATGCAGGAAAAATCACTTGCTGACATTTGGAATCAGATTGACAAGCTTAGAGGTAATATGGCCATGAAACAAGCTGAAATGAGCACAGAAATTGAACGAAAA

mRNA sequence

GATATTGCTAATGCTAAGAAGCATAAACAATCAATTTCCCAAGGCTCGTTGAATAAGGAAAAATCACTTGCTGACATTTGGAATCAGATTGACAAGCTTAGAGGTAATATGGCCATGAAACAAGCTGAAATGAGCACAGAAATTGAACGAAAA

Coding sequence (CDS)

GATATTGCTAATGCTAAGAAGCATAAACAATCAATTTCCCAAGGCTCGTTGAATAAGGAAAAATCACTTGCTGACATTTGGAATCAGATTGACAAGCTTAGAGGTAATATGGCCATGAAACAAGCTGAAATGAGCACAGAAATTGAACGAAAA

Protein sequence

DIANAKKHKQSISQGSLNKEKSLADIWNQIDKLRGNMAMKQAEMSTEIERK
Homology
[Close]
BLAST of Chy4G072840 vs. ExPASy Swiss-Prot
Match: Q56YN8 (Structural maintenance of chromosomes protein 3 OS=Arabidopsis thaliana OX=3702 GN=SMC3 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 9.8e-05
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 1   DIANAKKHKQSISQGSLNKEKSLADIWNQIDKLRGNMAMKQAEMSTEI 49
           +IANA K K +I +    KEK L DI  +ID++R +M+MK+AEM TE+
Sbjct: 728 EIANANKQKHAIHKAIEYKEKLLGDIRTRIDQVRSSMSMKEAEMGTEL 775

[Close]
BLAST of Chy4G072840 vs. ExPASy TrEMBL
Match: A0A1S3BNL0 (Structural maintenance of chromosomes protein OS=Cucumis melo OX=3656 GN=LOC103491597 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-10
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 1   DIANAKKHKQSISQGSLNKEKSLADIWNQIDKLRGNMAMKQAEMSTEI 49
           DIANA+K KQSIS+  LNKEKSLAD+ NQID+LRGNMAMKQAEM T++
Sbjct: 728 DIANAQKQKQSISKARLNKEKSLADVRNQIDQLRGNMAMKQAEMGTDL 775

[Close]
BLAST of Chy4G072840 vs. ExPASy TrEMBL
Match: A0A5A7TAH3 (Structural maintenance of chromosomes protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00430 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-10
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 1   DIANAKKHKQSISQGSLNKEKSLADIWNQIDKLRGNMAMKQAEMSTEI 49
           DIANA+K KQSIS+  LNKEKSLAD+ NQID+LRGNMAMKQAEM T++
Sbjct: 732 DIANAQKQKQSISKARLNKEKSLADVRNQIDQLRGNMAMKQAEMGTDL 779

[Close]
BLAST of Chy4G072840 vs. ExPASy TrEMBL
Match: A0A5D3DDF4 (Structural maintenance of chromosomes protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00640 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-10
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 1   DIANAKKHKQSISQGSLNKEKSLADIWNQIDKLRGNMAMKQAEMSTEI 49
           DIANA+K KQSIS+  LNKEKSLAD+ NQID+LRGNMAMKQAEM T++
Sbjct: 740 DIANAQKQKQSISKARLNKEKSLADVRNQIDQLRGNMAMKQAEMGTDL 787

[Close]
BLAST of Chy4G072840 vs. ExPASy TrEMBL
Match: A0A0A0L0E5 (Structural maintenance of chromosomes protein OS=Cucumis sativus OX=3659 GN=Csa_4G279900 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-10
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 1   DIANAKKHKQSISQGSLNKEKSLADIWNQIDKLRGNMAMKQAEMSTEI 49
           DIANA+K KQSIS+  LNKEKSLAD+ NQID+LRGNMAMKQAEM T++
Sbjct: 752 DIANAQKQKQSISKARLNKEKSLADVRNQIDQLRGNMAMKQAEMGTDL 799

[Close]
BLAST of Chy4G072840 vs. ExPASy TrEMBL
Match: A0A1S3BMX7 (structural maintenance of chromosomes protein 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491597 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-10
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 1   DIANAKKHKQSISQGSLNKEKSLADIWNQIDKLRGNMAMKQAEMSTEI 49
           DIANA+K KQSIS+  LNKEKSLAD+ NQID+LRGNMAMKQAEM T++
Sbjct: 614 DIANAQKQKQSISKARLNKEKSLADVRNQIDQLRGNMAMKQAEMGTDL 661

[Close]
BLAST of Chy4G072840 vs. NCBI nr
Match: XP_031740065.1 (structural maintenance of chromosomes protein 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 2.30e-13
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 1   DIANAKKHKQSISQGSLNKEKSLADIWNQIDKLRGNMAMKQAEMSTEI 48
           DIANA+K KQSIS+  LNKEKSLAD+ NQID+LRGNMAMKQAEM T++
Sbjct: 607 DIANAQKQKQSISKARLNKEKSLADVRNQIDQLRGNMAMKQAEMGTDL 654

[Close]
BLAST of Chy4G072840 vs. NCBI nr
Match: XP_008449838.1 (PREDICTED: structural maintenance of chromosomes protein 3 isoform X2 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 2.30e-13
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 1   DIANAKKHKQSISQGSLNKEKSLADIWNQIDKLRGNMAMKQAEMSTEI 48
           DIANA+K KQSIS+  LNKEKSLAD+ NQID+LRGNMAMKQAEM T++
Sbjct: 614 DIANAQKQKQSISKARLNKEKSLADVRNQIDQLRGNMAMKQAEMGTDL 661

[Close]
BLAST of Chy4G072840 vs. NCBI nr
Match: XP_011653545.1 (structural maintenance of chromosomes protein 3 isoform X1 [Cucumis sativus] >XP_011653546.1 structural maintenance of chromosomes protein 3 isoform X1 [Cucumis sativus] >XP_031740064.1 structural maintenance of chromosomes protein 3 isoform X1 [Cucumis sativus] >KGN54455.2 hypothetical protein Csa_018128 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 2.30e-13
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 1   DIANAKKHKQSISQGSLNKEKSLADIWNQIDKLRGNMAMKQAEMSTEI 48
           DIANA+K KQSIS+  LNKEKSLAD+ NQID+LRGNMAMKQAEM T++
Sbjct: 728 DIANAQKQKQSISKARLNKEKSLADVRNQIDQLRGNMAMKQAEMGTDL 775

[Close]
BLAST of Chy4G072840 vs. NCBI nr
Match: XP_008449833.1 (PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo] >XP_008449834.1 PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo] >XP_008449835.1 PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo] >XP_008449836.1 PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo] >XP_016900753.1 PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo] >XP_016900754.1 PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo] >XP_016900755.1 PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 2.30e-13
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 1   DIANAKKHKQSISQGSLNKEKSLADIWNQIDKLRGNMAMKQAEMSTEI 48
           DIANA+K KQSIS+  LNKEKSLAD+ NQID+LRGNMAMKQAEM T++
Sbjct: 728 DIANAQKQKQSISKARLNKEKSLADVRNQIDQLRGNMAMKQAEMGTDL 775

[Close]
BLAST of Chy4G072840 vs. NCBI nr
Match: KAA0040073.1 (structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 2.30e-13
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 1   DIANAKKHKQSISQGSLNKEKSLADIWNQIDKLRGNMAMKQAEMSTEI 48
           DIANA+K KQSIS+  LNKEKSLAD+ NQID+LRGNMAMKQAEM T++
Sbjct: 732 DIANAQKQKQSISKARLNKEKSLADVRNQIDQLRGNMAMKQAEMGTDL 779

[Close]
BLAST of Chy4G072840 vs. TAIR 10
Match: AT2G27170.1 (Structural maintenance of chromosomes (SMC) family protein )

HSP 1 Score: 46.6 bits (109), Expect = 6.9e-06
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 1   DIANAKKHKQSISQGSLNKEKSLADIWNQIDKLRGNMAMKQAEMSTEI 49
           +IANA K K +I +    KEK L DI  +ID++R +M+MK+AEM TE+
Sbjct: 728 EIANANKQKHAIHKAIEYKEKLLGDIRTRIDQVRSSMSMKEAEMGTEL 775

[Close]
BLAST of Chy4G072840 vs. TAIR 10
Match: AT2G27170.2 (Structural maintenance of chromosomes (SMC) family protein )

HSP 1 Score: 46.6 bits (109), Expect = 6.9e-06
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 1   DIANAKKHKQSISQGSLNKEKSLADIWNQIDKLRGNMAMKQAEMSTEI 49
           +IANA K K +I +    KEK L DI  +ID++R +M+MK+AEM TE+
Sbjct: 728 EIANANKQKHAIHKAIEYKEKLLGDIRTRIDQVRSSMSMKEAEMGTEL 775

The following BLAST results are available for this feature:
BLAST of Chy4G072840 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q56YN89.8e-0550.00Structural maintenance of chromosomes protein 3 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Chy4G072840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BNL02.8e-1077.08Structural maintenance of chromosomes protein OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A5A7TAH32.8e-1077.08Structural maintenance of chromosomes protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3DDF42.8e-1077.08Structural maintenance of chromosomes protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A0A0L0E52.8e-1077.08Structural maintenance of chromosomes protein OS=Cucumis sativus OX=3659 GN=Csa_... [more]
A0A1S3BMX72.8e-1077.08structural maintenance of chromosomes protein 3 isoform X2 OS=Cucumis melo OX=36... [more]
BLAST of Chy4G072840 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031740065.12.30e-1377.08structural maintenance of chromosomes protein 3 isoform X2 [Cucumis sativus][more]
XP_008449838.12.30e-1377.08PREDICTED: structural maintenance of chromosomes protein 3 isoform X2 [Cucumis m... [more]
XP_011653545.12.30e-1377.08structural maintenance of chromosomes protein 3 isoform X1 [Cucumis sativus] >XP... [more]
XP_008449833.12.30e-1377.08PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Cucumis m... [more]
KAA0040073.12.30e-1377.08structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo var. ma... [more]
BLAST of Chy4G072840 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G27170.16.9e-0650.00Structural maintenance of chromosomes (SMC) family protein [more]
AT2G27170.26.9e-0650.00Structural maintenance of chromosomes (SMC) family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G072840.1Chy4G072840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051301 cell division
biological_process GO:0051321 meiotic cell cycle
biological_process GO:0000819 sister chromatid segregation
cellular_component GO:0005694 chromosome
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity