Chy4G072580 (gene) Cucumber (hystrix) v1

Overview
NameChy4G072580
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description30S ribosomal protein S9
LocationchrH04: 5431616 .. 5433487 (+)
RNA-Seq ExpressionChy4G072580
SyntenyChy4G072580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACTTCTATATCCTCCCTTGCATTTTCTCTTTCTTCTCTCTCCTTTTCTTCCCAAGTATCACACAAGCCAAGTGCCCTATCCTTTCCCCGTTCAAAATCTCTTCTAATTTTCCCTTCCCCACTTGTCGTATCTGCCTCCGCCGCTGCCGCTGTCGAGACCGCCGACCTTAAGACTTTCGTCAAATCGAGCCTCCCTGGTGGTTTCGCCGCTCAAACGCTTATTGGTACTGGTCGCCGGAAATCTGCCGTAGCTCGTGTTGTCCTTCGAGAAGGCACTGGCAAAGTTATTATCAATTACCGCGACGCTAAGGTTCTCTATCTTTTCCTTTCTTCGCCTAGTTTCCTTTAGTTTAATCCATTTTCTCCTCCTAATTTTTGGTGCTGGCTGTTCTTTGGACGATCTAGGGATTTTGTTTCTTTTGCTGAATTCGACTAGGTTCGTTTGATGGCAATGCAAATGTTTTCTTTCTTTTTTTTATTAAACCAACAATTGTTGTTATATGTTCCTGATTACCCTCTTCTATATGCGATGGAACTGATACTTTTCTTTAATCTTTCCCCACCGACTCTGTTATCGATCTGCGACGTTTATTATGTTGAAGTGGAAATGAACTTGAGAGTAACATTTTTTACATTCTAGAATTAAATTCTAAGGCTATTGTTTCTTCATCTTGTGCGGTGAATTTATATTAGAAGGTTCCATCGCTTGGTGCTAAATTCGGATAAAGGACTGATGCATGTCTAGTGTTTCTTGTAAGTTTGAGTTTGAGCTTCCAGTGAAATGGTTCATAATGCCAAAACACATATCTATTTCGGGGATTGAGTAGTTCCCTTTTCTTTCTAAGTTGGTGTGGGAGGGAAAATGTGCCATTGTTCTTCCACTTACATCACATATGGAAATCTTTAACATCTGATTACATTGGATCAATTGCAAATCCTTCGTTTGTCATTTTCCAGCGTTCATTTGTCATAGTGTTTCTGGAGATAGCAACTATAATCTTACGACCTTACTTAAACAGGATCTGTTTTATTGGTTGTACAACTCTCTCCTTTAGGTTCTAAAGAGATGGAAATCATAGTATCAAGTCCTGTACGGGTGTAACTAATGCCTACATTTGTTCCTTAATATGTTAAGATGTTTGTTTCACCTATAAAGAAGTGAATTTAGTACAATTTTTCTTTCTTTCTTCCATTGAGAGGGAGTGGCGGGATTTGAACCTCAAGGCTTTTGTTCGAATGTATATGTCTTTCAAGCTTTGCTCATAGTGAAGAAACGTGTTCTGTTTCCTGTTTGGATGCCGCTTTCCCTTGCATGTTTATAAGGTTTTTCTTTCGTTGTGTACAATTAAGTGGGATTGTGAAGATTTACTACTGTTGAGATCAGGTTTTTCTAGCATTGATGCTTGAATTATCTCGTCTATACTCTGTTTAGAGTAAGTAGAAGATTCACCCAATTTGTTGTGAGGCTCTAGCTCTTTTATTTATTTAAGACAACTTGTTATAACAACAACCAATTGGTTTTGTATGCAGTTTTTAAGCTGTAACTCACCTCTACATTGGAATACACTATTTGTTGCAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAATTCCTTTAGTAACATTAGGATACGAAAGTAGCTACGATGTATTCGTGAAGGCCGAAGGAGGCGGGCTATCTGGCCAGGCTCAGGCAATTTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGATGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACTCTAGAGTTGTGGAGAGAAAGAAGGCTGGTCTCAAGAAAGCTCGTAAAGCCCCACAATTCTCCAAGCGTTGA

mRNA sequence

ATGGCTACTTCTATATCCTCCCTTGCATTTTCTCTTTCTTCTCTCTCCTTTTCTTCCCAAGTATCACACAAGCCAAGTGCCCTATCCTTTCCCCGTTCAAAATCTCTTCTAATTTTCCCTTCCCCACTTGTCGTATCTGCCTCCGCCGCTGCCGCTGTCGAGACCGCCGACCTTAAGACTTTCGTCAAATCGAGCCTCCCTGGTGGTTTCGCCGCTCAAACGCTTATTGGTACTGGTCGCCGGAAATCTGCCGTAGCTCGTGTTGTCCTTCGAGAAGGCACTGGCAAAGTTATTATCAATTACCGCGACGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAATTCCTTTAGTAACATTAGGATACGAAAGTAGCTACGATGTATTCGTGAAGGCCGAAGGAGGCGGGCTATCTGGCCAGGCTCAGGCAATTTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGATGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACTCTAGAGTTGTGGAGAGAAAGAAGGCTGGTCTCAAGAAAGCTCGTAAAGCCCCACAATTCTCCAAGCGTTGA

Coding sequence (CDS)

ATGGCTACTTCTATATCCTCCCTTGCATTTTCTCTTTCTTCTCTCTCCTTTTCTTCCCAAGTATCACACAAGCCAAGTGCCCTATCCTTTCCCCGTTCAAAATCTCTTCTAATTTTCCCTTCCCCACTTGTCGTATCTGCCTCCGCCGCTGCCGCTGTCGAGACCGCCGACCTTAAGACTTTCGTCAAATCGAGCCTCCCTGGTGGTTTCGCCGCTCAAACGCTTATTGGTACTGGTCGCCGGAAATCTGCCGTAGCTCGTGTTGTCCTTCGAGAAGGCACTGGCAAAGTTATTATCAATTACCGCGACGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAATTCCTTTAGTAACATTAGGATACGAAAGTAGCTACGATGTATTCGTGAAGGCCGAAGGAGGCGGGCTATCTGGCCAGGCTCAGGCAATTTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGATGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACTCTAGAGTTGTGGAGAGAAAGAAGGCTGGTCTCAAGAAAGCTCGTAAAGCCCCACAATTCTCCAAGCGTTGA

Protein sequence

MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLIFPSPLVVSASAAAAVETADLKTFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQYVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR*
Homology
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BLAST of Chy4G072580 vs. ExPASy Swiss-Prot
Match: Q9XJ27 (30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 PE=2 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 4.2e-75
Identity = 154/206 (74.76%), Postives = 177/206 (85.92%), Query Frame = 0 

Query: 4   SISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLIFP------SPLVVSASAAA---AVE 63
           SI++LA SLSSLSFSSQVS +P+ +SFPR+ S+   P      + L ++A+ +A     E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TADLKTFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLW 123
             +LK +VKS LPGGFAAQ +IGTGRRK A+ARVVL+EGTGKVIINYRDAKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLL 183
           LQYVK+PLVTLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVS DHRSPLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDSRVVERKKAGLKKARKAPQFSKR 201
           TRD+RVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

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BLAST of Chy4G072580 vs. ExPASy Swiss-Prot
Match: P82278 (30S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE=1 SV=2)

HSP 1 Score: 271.6 bits (693), Expect = 7.4e-72
Identity = 151/208 (72.60%), Postives = 171/208 (82.21%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLI----FPSPLVVSASAAAA---- 60
           MA SISSL  S +SLSF+S ++ KP  L   R+K   +       PLV++A++A A    
Sbjct: 1   MAVSISSLTSSFASLSFTSNLTPKPQTLPMARTKPFSLSNPAVVKPLVITATSATAPVEV 60

Query: 61  VETADLKTFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNP 120
            ETADL+ FVKS LPGGFAAQT+IGTGRRK A+ARVVL+EGTGK IINYRDAKEYLQGNP
Sbjct: 61  AETADLEKFVKSRLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNP 120

Query: 121 LWLQYVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEG 180
           LWLQYVK PL TLGYE++YDVFVKA GGGLSGQAQAISLG+ARALLKVS  HR+PLK+EG
Sbjct: 121 LWLQYVKTPLATLGYETNYDVFVKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEG 180

Query: 181 LLTRDSRVVERKKAGLKKARKAPQFSKR 201
           LLTRDSR+VERKK GLKKARKAPQFSKR
Sbjct: 181 LLTRDSRIVERKKPGLKKARKAPQFSKR 208

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BLAST of Chy4G072580 vs. ExPASy Swiss-Prot
Match: Q8DMK7 (30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpsI PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.0e-36
Identity = 79/125 (63.20%), Postives = 98/125 (78.40%), Query Frame = 0 

Query: 76  IGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQYVKIPLVTLGYESSYDVFV 135
           +GTGRRKSAVARV L  G+G++ IN R+  +YLQ NP++L  VK PL TLG E+SYD++V
Sbjct: 13  LGTGRRKSAVARVRLIPGSGQLWINGRNGADYLQNNPIYLNLVKAPLETLGLENSYDIYV 72

Query: 136 KAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKAP 195
            A GGGL+GQA AI LGIARAL ++  ++R PLK EG LTRD R  ER+K GL+KARKAP
Sbjct: 73  NATGGGLTGQADAIRLGIARALCQLDIENRKPLKTEGYLTRDPRAKERRKYGLRKARKAP 132

Query: 196 QFSKR 201
           Q+SKR
Sbjct: 133 QYSKR 137

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BLAST of Chy4G072580 vs. ExPASy Swiss-Prot
Match: Q9MUV1 (30S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.5e-36
Identity = 83/125 (66.40%), Postives = 94/125 (75.20%), Query Frame = 0 

Query: 76  IGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQYVKIPLVTLGYESSYDVFV 135
           +GTGRRKSAVARV L  G G+VIIN      YLQ N  +L  V+ PL TLG E +YD+ V
Sbjct: 13  LGTGRRKSAVARVRLVPGNGEVIINGLPGTNYLQFNGSYLSAVRSPLETLGLEDNYDIIV 72

Query: 136 KAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKAP 195
           KA GGGL+GQA+AI LG+ARAL  +   +R PLKKEG LTRDSRV ERKK GLKKARKAP
Sbjct: 73  KAVGGGLTGQAEAIRLGVARALCTIDTSNRHPLKKEGFLTRDSRVKERKKYGLKKARKAP 132

Query: 196 QFSKR 201
           QFSKR
Sbjct: 133 QFSKR 137

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BLAST of Chy4G072580 vs. ExPASy Swiss-Prot
Match: B2ITM7 (30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpsI PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-34
Identity = 76/124 (61.29%), Postives = 93/124 (75.00%), Query Frame = 0 

Query: 77  GTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQYVKIPLVTLGYESSYDVFVK 136
           GTGRRK+AVARV L  GTG++ +N +D   Y Q NP +L  +K PL TLG E+ YD+ VK
Sbjct: 15  GTGRRKNAVARVRLVPGTGQLTVNGKDGNLYFQFNPNYLGVIKAPLETLGLENEYDILVK 74

Query: 137 AEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQ 196
           AEGGGL+GQA ++ LG+ARAL ++  D+R PLK EG LTRD R  ERKK GL KARKAPQ
Sbjct: 75  AEGGGLTGQADSVRLGVARALCQLDPDNRPPLKTEGYLTRDPRAKERKKYGLHKARKAPQ 134

Query: 197 FSKR 201
           +SKR
Sbjct: 135 YSKR 138

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BLAST of Chy4G072580 vs. ExPASy TrEMBL
Match: A0A5A7UBW5 (30S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00010 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.2e-93
Identity = 195/204 (95.59%), Postives = 199/204 (97.55%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLIFP----SPLVVSASAAAAVETA 60
           MATSISSLAFSLSSLSFSSQVSHKP+ALSFPRSKSLLI P    SPL+VSASAAAAVETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120
           DLK+FVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 201
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Chy4G072580 vs. ExPASy TrEMBL
Match: A0A1S3CRR0 (30S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.2e-93
Identity = 195/204 (95.59%), Postives = 199/204 (97.55%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLIFP----SPLVVSASAAAAVETA 60
           MATSISSLAFSLSSLSFSSQVSHKP+ALSFPRSKSLLI P    SPL+VSASAAAAVETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120
           DLK+FVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 201
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Chy4G072580 vs. ExPASy TrEMBL
Match: A0A0A0LDS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G854240 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.7e-92
Identity = 193/204 (94.61%), Postives = 196/204 (96.08%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLIFP----SPLVVSASAAAAVETA 60
           MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLI P    S LVV+ASAAA VETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVTASAAAVVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120
           DLKTFVKSSLPGGFAAQTL GTGRRKSAVARVVLREGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 201
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DARVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Chy4G072580 vs. ExPASy TrEMBL
Match: A0A6J1CNY0 (30S ribosomal protein S9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013001 PE=3 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 2.9e-87
Identity = 181/204 (88.73%), Postives = 193/204 (94.61%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLIF----PSPLVVSASAAAAVETA 60
           MA+SISSLAFSLSSLSFSSQ+S KP+ LSFPRSKSL+I      SPLVVSASAA  VETA
Sbjct: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120
           +L++FVKS LPGGFAAQTLIGTGRRKSA+ARVV++EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHR+PLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 201
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Chy4G072580 vs. ExPASy TrEMBL
Match: A0A6J1FS60 (30S ribosomal protein S9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446382 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.9e-86
Identity = 182/204 (89.22%), Postives = 192/204 (94.12%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLI----FPSPLVVSASAAAAVETA 60
           MATS+SSLAFSLSSLSFSSQVS  P++LSFPRSKSL+I      SPLVVSASA +AVETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120
           +LK +VKS LPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 201
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Chy4G072580 vs. NCBI nr
Match: XP_008466625.1 (PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis melo] >KAA0051696.1 30S ribosomal protein S9 [Cucumis melo var. makuwa] >TYJ97914.1 30S ribosomal protein S9 [Cucumis melo var. makuwa])

HSP 1 Score: 353 bits (906), Expect = 6.17e-122
Identity = 195/204 (95.59%), Postives = 199/204 (97.55%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLIFPS----PLVVSASAAAAVETA 60
           MATSISSLAFSLSSLSFSSQVSHKP+ALSFPRSKSLLI PS    PL+VSASAAAAVETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120
           DLK+FVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 200
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Chy4G072580 vs. NCBI nr
Match: XP_004147796.1 (30S ribosomal protein S9, chloroplastic [Cucumis sativus] >KGN59928.1 hypothetical protein Csa_002564 [Cucumis sativus])

HSP 1 Score: 347 bits (891), Expect = 1.19e-119
Identity = 193/204 (94.61%), Postives = 196/204 (96.08%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLIFPSP----LVVSASAAAAVETA 60
           MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLI PS     LVV+ASAAA VETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVTASAAAVVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120
           DLKTFVKSSLPGGFAAQTL GTGRRKSAVARVVLREGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 200
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DARVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Chy4G072580 vs. NCBI nr
Match: XP_038903352.1 (30S ribosomal protein S9, chloroplastic [Benincasa hispida])

HSP 1 Score: 345 bits (884), Expect = 1.39e-118
Identity = 190/204 (93.14%), Postives = 196/204 (96.08%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLIF----PSPLVVSASAAAAVETA 60
           MATS+SSLAFSLSSLSFSSQVSHKP+ALSFPRSKSL I      +PLVVSASAAA VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSHKPNALSFPRSKSLQISHASSTTPLVVSASAAAGVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120
           DL++FVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLRSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 200
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Chy4G072580 vs. NCBI nr
Match: XP_022143016.1 (30S ribosomal protein S9, chloroplastic [Momordica charantia])

HSP 1 Score: 332 bits (851), Expect = 1.48e-113
Identity = 181/204 (88.73%), Postives = 193/204 (94.61%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLIF----PSPLVVSASAAAAVETA 60
           MA+SISSLAFSLSSLSFSSQ+S KP+ LSFPRSKSL+I      SPLVVSASAA  VETA
Sbjct: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120
           +L++FVKS LPGGFAAQTLIGTGRRKSA+ARVV++EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHR+PLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 200
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Chy4G072580 vs. NCBI nr
Match: XP_022940950.1 (30S ribosomal protein S9, chloroplastic [Cucurbita moschata] >KAG6608514.1 30S ribosomal protein S9, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037838.1 30S ribosomal protein S9, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 329 bits (844), Expect = 1.73e-112
Identity = 182/204 (89.22%), Postives = 192/204 (94.12%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLIFP----SPLVVSASAAAAVETA 60
           MATS+SSLAFSLSSLSFSSQVS  P++LSFPRSKSL+I      SPLVVSASA +AVETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120
           +LK +VKS LPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 200
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Chy4G072580 vs. TAIR 10
Match: AT1G74970.1 (ribosomal protein S9 )

HSP 1 Score: 282.3 bits (721), Expect = 3.0e-76
Identity = 154/206 (74.76%), Postives = 177/206 (85.92%), Query Frame = 0 

Query: 4   SISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLIFP------SPLVVSASAAA---AVE 63
           SI++LA SLSSLSFSSQVS +P+ +SFPR+ S+   P      + L ++A+ +A     E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TADLKTFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLW 123
             +LK +VKS LPGGFAAQ +IGTGRRK A+ARVVL+EGTGKVIINYRDAKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLL 183
           LQYVK+PLVTLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVS DHRSPLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDSRVVERKKAGLKKARKAPQFSKR 201
           TRD+RVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

[Close]
BLAST of Chy4G072580 vs. TAIR 10
Match: AT3G49080.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 5.3e-17
Identity = 55/126 (43.65%), Postives = 73/126 (57.94%), Query Frame = 0 

Query: 77  GTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQYVKI--PLVTLGYESSYDVF 136
           GTGRRK ++ARV ++ G GK  +N ++   Y    P+      +  PL        +D+ 
Sbjct: 308 GTGRRKCSIARVWIQPGEGKFQVNEKEFDVYF---PMLDHRAALLRPLAETKTLGRWDIK 367

Query: 137 VKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKA 196
              +GGG +GQ  AI LGI+RAL     D R+ L+  G LTRDSRVVERKK G  KARK+
Sbjct: 368 CTVKGGGTTGQVGAIQLGISRALQNWEPDMRTSLRAAGFLTRDSRVVERKKPGKAKARKS 427

Query: 197 PQFSKR 201
            Q+ KR
Sbjct: 428 FQWVKR 430

The following BLAST results are available for this feature:
BLAST of Chy4G072580 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9XJ274.2e-7574.7630S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 ... [more]
P822787.4e-7272.6030S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE... [more]
Q8DMK75.0e-3663.2030S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=19722... [more]
Q9MUV16.5e-3666.4030S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE... [more]
B2ITM71.6e-3461.2930S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) O... [more]
BLAST of Chy4G072580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UBW51.2e-9395.5930S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3CRR01.2e-9395.5930S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 ... [more]
A0A0A0LDS06.7e-9294.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G854240 PE=3 SV=1[more]
A0A6J1CNY02.9e-8788.7330S ribosomal protein S9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A6J1FS601.9e-8689.2230S ribosomal protein S9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
BLAST of Chy4G072580 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008466625.16.17e-12295.59PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis melo] >KAA0051696.1 ... [more]
XP_004147796.11.19e-11994.6130S ribosomal protein S9, chloroplastic [Cucumis sativus] >KGN59928.1 hypothetic... [more]
XP_038903352.11.39e-11893.1430S ribosomal protein S9, chloroplastic [Benincasa hispida][more]
XP_022143016.11.48e-11388.7330S ribosomal protein S9, chloroplastic [Momordica charantia][more]
XP_022940950.11.73e-11289.2230S ribosomal protein S9, chloroplastic [Cucurbita moschata] >KAG6608514.1 30S r... [more]
BLAST of Chy4G072580 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G74970.13.0e-7674.76ribosomal protein S9 [more]
AT3G49080.15.3e-1743.65Ribosomal protein S5 domain 2-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 66..200
e-value: 1.8E-49
score: 169.3
IPR000754Ribosomal protein S9PFAMPF00380Ribosomal_S9coord: 79..200
e-value: 1.3E-41
score: 141.9
IPR000754Ribosomal protein S9PANTHERPTHR21569RIBOSOMAL PROTEIN S9coord: 55..200
NoneNo IPR availablePANTHERPTHR21569:SF128S RIBOSOMAL PROTEIN S9, MITOCHONDRIALcoord: 55..200
IPR020574Ribosomal protein S9, conserved sitePROSITEPS00360RIBOSOMAL_S9coord: 139..157
IPR023035Ribosomal protein S9, bacterial/plastidHAMAPMF_00532_BRibosomal_S9_Bcoord: 70..200
score: 32.63847
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 74..200

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G072580.1Chy4G072580.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0000312 plastid small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome