Chy4G071370 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G071370
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	AP complex subunit sigma
Location	chrH04: 3707557 .. 3709796 (-)
RNA-Seq Expression	Chy4G071370
Synteny	Chy4G071370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTGTAGACTTTCTCATTTTGACGATCTTCCCCCTAGTCTCATATTGTAAGGGTTTTGACATTTAACATTTCATTTTTGCAGATCCGGTTCATACTTTTGCAGAACAGGCAGGGCAAAACCCGTCTCGCTAAGTATTATGTTCCTCTTGAGGAATCCGAGAAGCACAAGGTCGAGTATGAGGTATTTCTAACTCCCTTCTGAATTTCCTTTCTTGATTCTCTGATTCCAATTTTCTCTTTCCAGCCTAAGTTCTAGGTCTTTTCTTTTGATTGAATTCCAGGTTCATCGATTGGTGGTTAATAGAGATCCCAAGTTCACAAATTTCGTTGAGGTGTGAAATTTTTTGGTTTGATTCTGTATGTTTATGTGATGGTACTTGTATCTTCTAATCAAGTGTGATGATTACCGGCTAAGGAAATGGCTATCATTTCTGGTTTATGCTGGATTTCTTGTTACTACACTTGTGTTCTGATGGAGAGTTCGTTCTTCACTGTTCTTTGTTGGGATTTGTTTTGTTTCAGCTGACATTTTTTTAGTTTCCCTTTTTGGGCATGAATCCTCGCATTTGTTTATGTTGCACGTCGCGTTCATCTGGTTTTTACGTAAGCTCTAGCTTATTCCATTCTTAACTGCTGTTTGCAGTTCCGAACACACAAGGTCATCTATAGAAGATATGCAGGATTGTTTTTCTCTCTTTGTGTGGACATAACAGACAACGAGTTGGCCTACCTCGAGTGTATTCATTTGTTTGTGGAGATTCTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAATTTTCACAAGGTTTGTTGATCTTCATTTTCTTTCTTCTTCATTTTTGTTTTCCATTCTATTGTATACCAATGAAGGTTCTTTATTTATGTTTTGAAATACTGGTCTTGTAACTCTCCTCTTACTTCTTGTATTATATCATATGATTTTTGTGTTGGGAATGCGATCAAAATCCCACATTGGTTAGATAATGGGATGATCATGGATATATAAGTGAGGACAACTATCTTCATTGTAATTAGACTTTTTGGAGTGAAACCAAAGGCAAGGTGATAGGGGTTTATGCCTAAAAATAGCAATATCATATCATTGTAGAAATATTTGGAGGGTCCGTTGTCCTTAACAAGTGGTATAAGCTCTTGACATACCCATGTTAGTAGAATCCTCAAGTGCTAAACAAAGATGTATTGAGCCTCAGAAGTAGTCACGATGTGATATGTGGTTGAACTTTATCATATTAATGGTGTGCTTCAATGAAGAGAAGTTAGCCTAGATAAGAGTTAGATGGATGAATGAATGACTATCTGAGGAGAGACTCGATGGTTCTTTGTTCAAGTGGAGGATTATTAGAGGAATACGACCAAAGTTCCACATTGGTTAAATAAGGAAATGATCATGGATATATAAGCAACTAATGCCATTGGTGTGATGCATTTTGAGGTCAAACCAAAAACAAAGTCATAAAGGTCTATGCCCAAAGTGAAGAATATCATACAATTGTGGAGATGTTGAGAGGGTTACTATCCTTAACTGTTTGTTTATCTATTCTATTTCATAAGTAATTAGCTATCCAGCGCATTCACAGCATTCTCTGTGTGTGCTCTCACTCAGTCAATACCAAGGCTCCAATTCAAATTCTTTGTGAACAAATCTTCCATCTTACTCTATTCAGTTTCATATGTCCAACAATGGCAAAAAAAAAAATCCTTGCATATTTTCTCTTTTCCTTAACTTGATGTTCACACTTGCATTTCTATTTCTATTTCCCTTCTAGTTCAAAACTGTAAATTTAAAGATTCATCGTCTGAGATTTGTTAATGTGGTAATTGTTGTGTTTTATCTGCTACCATACTTATCCACATTTTTGTTCTGAATCTGATGAAGGTCTATCTGATACTTGATGAATTTATTCTTGCGGGAGAACTCCAAGAAACGAGCAAAAAGGTAAAATAGTGCCTGTTTATTCCTAGTATTTGTGATTTTCTCTTTACCAGACAGTCAAACTACCTGTCTACACAATCTTGCATAGTCATAGAATTGTAGTTGTTGGCCATGCATGGGCATGGAGCCATATTACGAGAGTTTATTTATATGGGTTTTATTTGGCCTAAATGGTAATATCCAATCTCACGTTTAAATGGTTTTTTTCCATCTTCAAAAAATTTTCAGGCGATAATTGAAAGAATGGGGGAACTGGAAAAGCTGGAGTGA

mRNA sequence

ATGATCCGGTTCATACTTTTGCAGAACAGGCAGGGCAAAACCCGTCTCGCTAAGTATTATGTTCCTCTTGAGGAATCCGAGAAGCACAAGGTCGAGTATGAGGTTCATCGATTGGTGGTTAATAGAGATCCCAAGTTCACAAATTTCGTTGAGTTCCGAACACACAAGGTCATCTATAGAAGATATGCAGGATTGTTTTTCTCTCTTTGTGTGGACATAACAGACAACGAGTTGGCCTACCTCGAGTGTATTCATTTGTTTGTGGAGATTCTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAATTTTCACAAGGTCTATCTGATACTTGATGAATTTATTCTTGCGGGAGAACTCCAAGAAACGAGCAAAAAGGCGATAATTGAAAGAATGGGGGAACTGGAAAAGCTGGAGTGA

Coding sequence (CDS)

ATGATCCGGTTCATACTTTTGCAGAACAGGCAGGGCAAAACCCGTCTCGCTAAGTATTATGTTCCTCTTGAGGAATCCGAGAAGCACAAGGTCGAGTATGAGGTTCATCGATTGGTGGTTAATAGAGATCCCAAGTTCACAAATTTCGTTGAGTTCCGAACACACAAGGTCATCTATAGAAGATATGCAGGATTGTTTTTCTCTCTTTGTGTGGACATAACAGACAACGAGTTGGCCTACCTCGAGTGTATTCATTTGTTTGTGGAGATTCTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAATTTTCACAAGGTCTATCTGATACTTGATGAATTTATTCTTGCGGGAGAACTCCAAGAAACGAGCAAAAAGGCGATAATTGAAAGAATGGGGGAACTGGAAAAGCTGGAGTGA

Protein sequence

MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE*

Homology

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BLAST of Chy4G071370 vs. ExPASy Swiss-Prot
Match: Q84WL9 (AP-2 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=AP17 PE=2 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.6e-71
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRD KFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKKAIIERMGELEKLE 143
           GELQETSK+AIIERM ELEKL+
Sbjct: 121 GELQETSKRAIIERMSELEKLQ 142

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BLAST of Chy4G071370 vs. ExPASy Swiss-Prot
Match: O50016 (AP-2 complex subunit sigma OS=Zea mays OX=4577 GN=AP-17 PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 9.6e-66
Identity = 126/131 (96.18%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV--YLILDEFI 120
           RYAGLFFS+CVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV  YLILDEFI
Sbjct: 61  RYAGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYRYLILDEFI 120

Query: 121 LAGELQETSKK 130
           LAGELQETSK+
Sbjct: 121 LAGELQETSKR 131

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BLAST of Chy4G071370 vs. ExPASy Swiss-Prot
Match: Q7SAQ1 (AP-2 complex subunit sigma OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=aps-2 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.3e-50
Identity = 98/143 (68.53%), Postives = 117/143 (81.82%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIY 60
           M+ FIL+QNRQGKTRLAK+YVP  + EK K++ E+HRLV  RD K+ +NFVEFR HKV+Y
Sbjct: 1   MLSFILIQNRQGKTRLAKWYVPYSDEEKIKLKGEIHRLVAPRDQKYQSNFVEFRNHKVVY 60

Query: 61  RRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFIL 120
           RRYAGLFF  CVD  DNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  L
Sbjct: 61  RRYAGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYKVYAILDEVFL 120

Query: 121 AGELQETSKKAIIERMGELEKLE 143
           AGE++ETSK+ ++ R+  L+KLE
Sbjct: 121 AGEIEETSKQVVLTRLEHLDKLE 143

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BLAST of Chy4G071370 vs. ExPASy Swiss-Prot
Match: Q54H39 (AP-2 complex subunit sigma OS=Dictyostelium discoideum OX=44689 GN=ap2s1 PE=3 SV=2)

HSP 1 Score: 197.6 bits (501), Expect = 9.6e-50
Identity = 95/141 (67.38%), Postives = 117/141 (82.98%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MI FIL+QNRQGKTRL+K+Y P E+ EK K+ +E+H++V +R+ KFTNFVEFRTH+++YR
Sbjct: 1   MIHFILIQNRQGKTRLSKWYTPYEDVEKRKLSHEIHKIVNSRETKFTNFVEFRTHRIVYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFS+CVD TDNEL  LE IHLFVE+LD +F NVCELDLVFNF+KVY I+DE  LA
Sbjct: 61  RYAGLFFSVCVDPTDNELFCLEAIHLFVEVLDAYFGNVCELDLVFNFYKVYAIIDEVFLA 120

Query: 121 GELQETSKKAIIERMGELEKL 142
           GEL E SK  I++RM  L+ L
Sbjct: 121 GELMEPSKHVILQRMEFLDNL 141

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BLAST of Chy4G071370 vs. ExPASy Swiss-Prot
Match: Q4ICG5 (AP-2 complex subunit sigma OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=APS2 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.3e-48
Identity = 94/143 (65.73%), Postives = 116/143 (81.12%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIY 60
           M+ FIL+QNRQGKTRLAK+Y P  + +K K++ EVHRLV  RD K+ +NFVEFR +K++Y
Sbjct: 1   MLSFILIQNRQGKTRLAKWYAPFSDEQKIKLKGEVHRLVAPRDQKYQSNFVEFRNNKIVY 60

Query: 61  RRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFIL 120
           RRYAGLFF  CVD  DNELA+LE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  L
Sbjct: 61  RRYAGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNFYKVYAILDEVFL 120

Query: 121 AGELQETSKKAIIERMGELEKLE 143
           AGE++ETSK+ ++ R+  L+KLE
Sbjct: 121 AGEIEETSKQVVLTRLEHLDKLE 143

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BLAST of Chy4G071370 vs. ExPASy TrEMBL
Match: A0A6J1IET7 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111475477 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKKAIIERMGELEKLE 143
           GELQETSKKAIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of Chy4G071370 vs. ExPASy TrEMBL
Match: A0A0A0LE78 (AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_3G872150 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKKAIIERMGELEKLE 143
           GELQETSKKAIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of Chy4G071370 vs. ExPASy TrEMBL
Match: A0A6J1CLU3 (AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111012636 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKKAIIERMGELEKLE 143
           GELQETSKKAIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of Chy4G071370 vs. ExPASy TrEMBL
Match: A0A6J1FFL5 (AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111443508 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKKAIIERMGELEKLE 143
           GELQETSKKAIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of Chy4G071370 vs. ExPASy TrEMBL
Match: A0A1S3CRC8 (AP-2 complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103503878 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 52  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 111

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 112 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 171

Query: 121 GELQETSKKAIIERMGELEKLE 143
           GELQETSKKAIIERMGELEKLE
Sbjct: 172 GELQETSKKAIIERMGELEKLE 193

[Close]

BLAST of Chy4G071370 vs. NCBI nr
Match: XP_004136383.1 (AP-2 complex subunit sigma [Cucumis sativus] >XP_022142554.1 AP-2 complex subunit sigma [Momordica charantia] >XP_022937105.1 AP-2 complex subunit sigma isoform X2 [Cucurbita moschata] >XP_022975656.1 AP-2 complex subunit sigma [Cucurbita maxima] >XP_023535342.1 AP-2 complex subunit sigma [Cucurbita pepo subsp. pepo] >XP_038900122.1 AP-2 complex subunit sigma [Benincasa hispida] >KAG6591270.1 AP-2 complex subunit sigma, partial [Cucurbita argyrosperma subsp. sororia] >KGN60033.1 hypothetical protein Csa_002387 [Cucumis sativus])

HSP 1 Score: 285 bits (729), Expect = 6.54e-97
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKKAIIERMGELEKLE 142
           GELQETSKKAIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of Chy4G071370 vs. NCBI nr
Match: XP_002510527.1 (AP-2 complex subunit sigma [Ricinus communis] >XP_007017794.1 PREDICTED: AP-2 complex subunit sigma [Theobroma cacao] >XP_007226014.1 AP-2 complex subunit sigma [Prunus persica] >XP_008221266.1 PREDICTED: AP-2 complex subunit sigma [Prunus mume] >XP_008357130.1 AP-2 complex subunit sigma [Malus domestica] >XP_012073807.1 AP-2 complex subunit sigma [Jatropha curcas] >XP_018810959.1 AP-2 complex subunit sigma [Juglans regia] >XP_018833439.1 AP-2 complex subunit sigma [Juglans regia] >XP_021284273.1 AP-2 complex subunit sigma [Herrania umbratica] >XP_021611658.1 AP-2 complex subunit sigma-like [Manihot esculenta] >XP_021826646.1 AP-2 complex subunit sigma [Prunus avium] >XP_021902794.1 AP-2 complex subunit sigma [Carica papaya] >XP_022756716.1 AP-2 complex subunit sigma [Durio zibethinus] >XP_022772661.1 AP-2 complex subunit sigma [Durio zibethinus] >XP_023914963.1 AP-2 complex subunit sigma [Quercus suber] >XP_024164749.1 AP-2 complex subunit sigma [Rosa chinensis] >XP_024922853.1 AP-2 complex subunit sigma isoform X2 [Ziziphus jujuba] >XP_030485299.1 AP-2 complex subunit sigma [Cannabis sativa] >XP_030950738.1 AP-2 complex subunit sigma [Quercus lobata] >XP_034226215.1 AP-2 complex subunit sigma [Prunus dulcis] >XP_041018753.1 AP-2 complex subunit sigma [Juglans microcarpa x Juglans regia] >XP_041021935.1 AP-2 complex subunit sigma [Juglans microcarpa x Juglans regia] >XP_041021936.1 AP-2 complex subunit sigma [Juglans microcarpa x Juglans regia] >XP_041021937.1 AP-2 complex subunit sigma [Juglans microcarpa x Juglans regia] >XP_042986239.1 AP-2 complex subunit sigma [Carya illinoinensis] >XP_042991540.1 AP-2 complex subunit sigma isoform X1 [Carya illinoinensis] >XP_042991541.1 AP-2 complex subunit sigma isoform X1 [Carya illinoinensis] >KAB2628232.1 AP-2 complex subunit sigma-like [Pyrus ussuriensis x Pyrus communis] >KAF2324690.1 hypothetical protein GH714_016302 [Hevea brasiliensis] >PON70735.1 Adaptor protein complex, sigma subunit [Parasponia andersonii] >PQQ21551.1 AP-2 complex subunit sigma [Prunus yedoensis var. nudiflora] >CAB4265577.1 unnamed protein product [Prunus armeniaca] >GAV63612.1 Clat_adaptor_s domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 284 bits (726), Expect = 1.88e-96
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKKAIIERMGELEKLE 142
           GELQETSKKAIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of Chy4G071370 vs. NCBI nr
Match: XP_012449814.1 (PREDICTED: AP-2 complex subunit sigma isoform X1 [Gossypium raimondii] >XP_016726662.2 AP-2 complex subunit sigma [Gossypium hirsutum] >XP_016729636.1 AP-2 complex subunit sigma isoform X1 [Gossypium hirsutum] >XP_017613264.1 PREDICTED: AP-2 complex subunit sigma [Gossypium arboreum] >KAB2023240.1 hypothetical protein ES319_D06G004300v1 [Gossypium barbadense] >KAG8492133.1 hypothetical protein CXB51_015685 [Gossypium anomalum] >TYG63146.1 hypothetical protein ES288_D06G005100v1 [Gossypium darwinii] >TYH64716.1 hypothetical protein ES332_D06G006000v1 [Gossypium tomentosum] >TYI75443.1 hypothetical protein E1A91_D06G004800v1 [Gossypium mustelinum])

HSP 1 Score: 283 bits (725), Expect = 2.66e-96
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRF+LLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFVLLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKKAIIERMGELEKLE 142
           GELQETSKKAIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of Chy4G071370 vs. NCBI nr
Match: XP_021682663.1 (AP-2 complex subunit sigma [Hevea brasiliensis] >KAF2310106.1 hypothetical protein GH714_006559 [Hevea brasiliensis])

HSP 1 Score: 283 bits (725), Expect = 2.66e-96
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHK+IYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKIIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKKAIIERMGELEKLE 142
           GELQETSKKAIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of Chy4G071370 vs. NCBI nr
Match: XP_008466486.1 (PREDICTED: AP-2 complex subunit sigma [Cucumis melo])

HSP 1 Score: 285 bits (729), Expect = 3.76e-96
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 52  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 111

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 112 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 171

Query: 121 GELQETSKKAIIERMGELEKLE 142
           GELQETSKKAIIERMGELEKLE
Sbjct: 172 GELQETSKKAIIERMGELEKLE 193

[Close]

BLAST of Chy4G071370 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 269.2 bits (687), Expect = 1.8e-72
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRD KFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKKAIIERMGELEKLE 143
           GELQETSK+AIIERM ELEKL+
Sbjct: 121 GELQETSKRAIIERMSELEKLQ 142

[Close]

BLAST of Chy4G071370 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 160.6 bits (405), Expect = 9.3e-40
Identity = 76/141 (53.90%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MI F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR PK  NF+E+R +KV+Y+
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQETSKKAIIERMGELEKL 142
           GELQE+SKK +   +   ++L
Sbjct: 121 GELQESSKKTVARIISAQDQL 141

[Close]

BLAST of Chy4G071370 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 160.6 bits (405), Expect = 9.3e-40
Identity = 77/141 (54.61%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MI F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR PK  NFVE+R +KV+Y+
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQETSKKAIIERMGELEKL 142
           GELQE+SKK +   +   ++L
Sbjct: 121 GELQESSKKTVARIISAQDQL 141

[Close]

BLAST of Chy4G071370 vs. TAIR 10
Match: AT4G35410.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 132.9 bits (333), Expect = 2.1e-31
Identity = 63/110 (57.27%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MI F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR PK  NFVE+R +KV+Y+
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 111
           RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHKV
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKV 110

[Close]

BLAST of Chy4G071370 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-28
Identity = 65/139 (46.76%), Postives = 95/139 (68.35%), Query Frame = 0


Query: 2   IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
           IRFIL+ N+QG+TRLA+YY  L   E+  +E E+ R  + R+ +  +FVE R +K++YRR
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRR 62

Query: 62  YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
           YA LFF + VD  +NELA LE IHL VE +D  F NVCELD++F+  K + +L+E ++ G
Sbjct: 63  YASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNG 122

Query: 122 ELQETSKKAIIERMGELEK 141
            + ETSK  I+  +  ++K
Sbjct: 123 CIVETSKANILSPIQLMDK 141

The following BLAST results are available for this feature:

BLAST of Chy4G071370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WL9	2.6e-71	95.77	AP-2 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=AP17 PE=2 SV=1	[more]
O50016	9.6e-66	96.18	AP-2 complex subunit sigma OS=Zea mays OX=4577 GN=AP-17 PE=2 SV=1	[more]
Q7SAQ1	4.3e-50	68.53	AP-2 complex subunit sigma OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A ...	[more]
Q54H39	9.6e-50	67.38	AP-2 complex subunit sigma OS=Dictyostelium discoideum OX=44689 GN=ap2s1 PE=3 SV...	[more]
Q4ICG5	5.3e-48	65.73	AP-2 complex subunit sigma OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657...	[more]

BLAST of Chy4G071370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IET7	1.4e-72	100.00	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111475477 PE=3 SV=1	[more]
A0A0A0LE78	1.4e-72	100.00	AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_3G872150 PE=3 SV=1	[more]
A0A6J1CLU3	1.4e-72	100.00	AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111012636 PE=3 SV=...	[more]
A0A6J1FFL5	1.4e-72	100.00	AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111443508 PE=3 SV=1	[more]
A0A1S3CRC8	1.4e-72	100.00	AP-2 complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103503878 PE=3 SV=1	[more]

BLAST of Chy4G071370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136383.1	6.54e-97	100.00	AP-2 complex subunit sigma [Cucumis sativus] >XP_022142554.1 AP-2 complex subuni...	[more]
XP_002510527.1	1.88e-96	99.30	AP-2 complex subunit sigma [Ricinus communis] >XP_007017794.1 PREDICTED: AP-2 co...	[more]
XP_012449814.1	2.66e-96	98.59	PREDICTED: AP-2 complex subunit sigma isoform X1 [Gossypium raimondii] >XP_01672...	[more]
XP_021682663.1	2.66e-96	98.59	AP-2 complex subunit sigma [Hevea brasiliensis] >KAF2310106.1 hypothetical prote...	[more]
XP_008466486.1	3.76e-96	100.00	PREDICTED: AP-2 complex subunit sigma [Cucumis melo]	[more]

BLAST of Chy4G071370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47830.1	1.8e-72	95.77	SNARE-like superfamily protein	[more]
AT2G17380.1	9.3e-40	53.90	associated protein 19	[more]
AT4G35410.2	9.3e-40	54.61	Clathrin adaptor complex small chain family protein	[more]
AT4G35410.1	2.1e-31	57.27	Clathrin adaptor complex small chain family protein	[more]
AT2G19790.1	1.6e-28	46.76	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016635	Adaptor protein complex, sigma subunit	PIRSF	PIRSF015588	AP_complex_sigma	coord: 1..142 e-value: 1.7E-64 score: 214.2
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 2..142
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 1..141 e-value: 1.0E-53 score: 181.1
None	No IPR available	GENE3D	3.30.450.60		coord: 1..142 e-value: 1.2E-60 score: 205.9
None	No IPR available	PANTHER	PTHR11753:SF41	AP COMPLEX SUBUNIT SIGMA	coord: 2..142
IPR027156	AP-2 complex subunit sigma	CDD	cd14833	AP2_sigma	coord: 1..141 e-value: 6.6514E-94 score: 265.59
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G071370.1	Chy4G071370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0072583	clathrin-dependent endocytosis
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0015031	protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030122	AP-2 adaptor complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0035615	clathrin adaptor activity