Chy4G070070 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G070070
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	serine/arginine-rich splicing factor RSZ22-like
Location	chrH04: 2612385 .. 2615042 (-)
RNA-Seq Expression	Chy4G070070
Synteny	Chy4G070070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCGTGTGTATGTTGGGAATTTGGATCCGAGGGTCTCTGAGCGCGAGCTTGAAGATGAATTTCGTGTGTTTGGAGTTATTCGAAGGTGTGATATATTTAACTTCGTGGTTAATTTTATGTGTTTTCTGCTTCCAATGTTAAACGCCATTTACTAGACAAGATGATCTATATTATCTGGTTATTTTTATTGGAATATGGTATAGGTTCATAGCTGTATCTGAAAATTTTGAACACTCAAAACTCGTAGTAAAAATATTTACCAGCACTTCTACTTAGCTTACGGCCATTAATTTTATGCTTTCAAGAATTCCTAACATTAACTTATCTCCTCAGATTTACTTATTGAATTTTTTATTTTCTTGCTATCAACTCTTTGGCCGTTGCCATGGATTTACCTGAATTTAGATTAAATATCTTACTCTGTATTTTCTTTAGAAGGTCCAATTTACATGATGATGTTGATACCAAATAATTTGGATGTTATCTTGGGCATCTAGTAGTCTTCTTAGCACACCGCTGCGAAATGAAAAATTTCATGCCCAGGGGAGCTGCAACTTAGCCTCATTTTGAGGCACTAACCTTGACATATTGTTAGATGCTGACATCATAGTCCCATAATCCTATATGTCTAATATTTATGGATTGAGTAGTTAGCTGGATTTAAAACTGCAACTTCTAATTATTCAAGGTTTCTCTGGGCCGGGTCTAGATCTCTTCCATCATATTTGCTTTATGAATTGGGTAGTCATAGGAGCTAATAATCGGAATGCCTGTCTTTAAATTTTGATGAGTAGTTGTGATCATAATCTCACAGGAACAGGTTATCCATATAGATACTTGGTTTATCCACAATTTTATCTGCCCAACTTTTATAAGGTTTGTTGATGCTCCCAGATTTGTAATCGGGTGTACGTTCAGGGTTAAACTACTAATATATGGGAAGACGAAGTCCTACTTTCTGGGTGTTAGACTGCAGGATACAAATTTTATCGATTTCAAACACTGGTATTCAATTTTTGCATCTTGTGTTTCAGTGTATGGGTTGCACGAAGACCCCCAGGTTATGCCTTCATAGATTTTGACGACCCCAGAGATGCACGGGATGCAATTCATGAATTAGATGGTACGTTGGGGATTTTCTGCTTTATTTGTGTGTGTGTGCTCTCTGTAATTGGATGGATTCTTCATTTTCTTAAGTCGGTGCATTGTTTTATACACTTTTTAGCAACGACATTTCTGGTATGGGTTATACGAAATTTCTTATGTCTATTGAATAATTGAACCAAGTTCAAGTACATGGATTTTCACCTCCTCAGATGCCATCTTATCCAACTATTATTTCTAATCCATTGATGAGAATTTCATAGGTTTTGTGTTTTTAATATCCTATATACAAACTTTAGGGCACCCCTTACTTTAGATTATACACTTTTCTGAATCTCCTATGATTTTTCTCATCTTTATTCTTCAATCTATTGTAAATAAGCAAGTTTCCTTTTCTTTTATGATATGTTGATGGTTTGTTAGCTTCACCTTCTTCATATTCGTGCCAAAGTTTGTTTATATTTCATTTTTGTCAGACAGTTCATAAATGTCAAACTTGTTTTGTTAATTGTGATTTCCATGATTTTTCTGAATATGGTTGATATTGTTGAAGATTTTGTTGCAACTCATTCATAGTTAACAATTGTTAATTCTGATTCAGGGAAGAATGGCTGGAGAGTTGAACTTTCTCACAATTCTAGAGGTGGTGGAGGTGGCCGTGGAGGAGGGGGTCGTGGTCGTTCTGGTGGATCTGATTTGAAATGCTATGAGTGTGGTGAGCCTGGGCATTTTGCTCGTGAGTGCCGTTTACGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGGTGGTGCTGGAAGAAGACGTAGCCGCAGTCCTCGATACCGCCGGAGTCCAAGTTATGGTCGCAGGTCTGAACATTGAGGCTAAATCCTGCTAGTTTCTTATTCGCAGTTGTTCGGATCATGCTTTTGTTAATAGTTCCCTTTGGTATTATTTATGATTTAGGGTGGTTTTGACGTCTTTGATTTATTTTCAGGAGTTACAGTCCTCGTGGAAGATCTCCAAGACGTCGCAGCTTGTCACCTCGTGGGCGTAGCTTTAGTAGATCACCTCCATACCGTGGTAGAGAGGAGCTACCTTATGCCAACGGGTGAGGCTCTTCAAAAATATTTTTTCTTTGGTAGATTTATTTTCTTCTACATGAATTTGTCTGCCTAGCTTGCATGCTATATAGTTGCAGCAAAAGATGTGCTTCAAGTTTAGGTATTTTTTGTTCTGTAATATCTTGGATGCATGATTTTTTGTGTGGGATTTAACTTAGAATTTTTTTGCTGTACTGGATTGTGTGTTATTTTCTTTCCTTTGTTCCTCGTTGGTGGTAGATGGTCTAAGTTAGTTTTTCATCACTACATAATTGTGTGAAGAGCCTCCAGTGCTCTCCAAATCTGCAATAAGTTTTCTGCATGCATATCCAAGCATTACATCGGTTTGTTTTAATTATATTCATTGTTATGATTTGTTCTGTGTTTTAATTTTGTACAGAAATGGCATAAAGGACCGGCGCCGGAGCAGGAGCTGAAGACTGCCGACTTCTCAACCTGCCTTAG

mRNA sequence

ATGTCTCGTGTGTATGTTGGGAATTTGGATCCGAGGGTCTCTGAGCGCGAGCTTGAAGATGAATTTCGTGTGTTTGGAGTTATTCGAAGTGTATGGGTTGCACGAAGACCCCCAGGTTATGCCTTCATAGATTTTGACGACCCCAGAGATGCACGGGATGCAATTCATGAATTAGATGGGAAGAATGGCTGGAGAGTTGAACTTTCTCACAATTCTAGAGGTGGTGGAGGTGGCCGTGGAGGAGGGGGTCGTGGTCGTTCTGGTGGATCTGATTTGAAATGCTATGAGTGTGGTGAGCCTGGGCATTTTGCTCGTGAGTGCCGTTTACGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGGTGGTGCTGGAAGAAGACGTAGCCGCAGTCCTCGATACCGCCGGAGTCCAAGTTATGGTCGCAGGAGTTACAGTCCTCGTGGAAGATCTCCAAGACGTCGCAGCTTGTCACCTCGTGGGCGTAGCTTTAGTAGATCACCTCCATACCGTGGTAGAGAGGAGCTACCTTATGCCAACGGGACCGGCGCCGGAGCAGGAGCTGAAGACTGCCGACTTCTCAACCTGCCTTAG

Coding sequence (CDS)

ATGTCTCGTGTGTATGTTGGGAATTTGGATCCGAGGGTCTCTGAGCGCGAGCTTGAAGATGAATTTCGTGTGTTTGGAGTTATTCGAAGTGTATGGGTTGCACGAAGACCCCCAGGTTATGCCTTCATAGATTTTGACGACCCCAGAGATGCACGGGATGCAATTCATGAATTAGATGGGAAGAATGGCTGGAGAGTTGAACTTTCTCACAATTCTAGAGGTGGTGGAGGTGGCCGTGGAGGAGGGGGTCGTGGTCGTTCTGGTGGATCTGATTTGAAATGCTATGAGTGTGGTGAGCCTGGGCATTTTGCTCGTGAGTGCCGTTTACGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGGTGGTGCTGGAAGAAGACGTAGCCGCAGTCCTCGATACCGCCGGAGTCCAAGTTATGGTCGCAGGAGTTACAGTCCTCGTGGAAGATCTCCAAGACGTCGCAGCTTGTCACCTCGTGGGCGTAGCTTTAGTAGATCACCTCCATACCGTGGTAGAGAGGAGCTACCTTATGCCAACGGGACCGGCGCCGGAGCAGGAGCTGAAGACTGCCGACTTCTCAACCTGCCTTAG

Protein sequence

MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDGKNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGGGGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSFSRSPPYRGREELPYANGTGAGAGAEDCRLLNLP*

Homology

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BLAST of Chy4G070070 vs. ExPASy Swiss-Prot
Match: O81126 (Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana OX=3702 GN=RSZ22 PE=1 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 9.8e-69
Identity = 150/202 (74.26%), Postives = 157/202 (77.72%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           MSRVYVGNLDPRV+ERELEDEFR FGV+RSVWVARRPPGYAF+DF+DPRDARDAI  LDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 61  KNGWRVELSHN--SRGGGG-----GRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGG 120
           KNGWRVE SHN   RGGGG     G GGGGRG  GGSDLKCYECGE GHFARECR R   
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNR--- 120

Query: 121 GGGGGGGGGGAGRRRSRS-----PRYRRSPSYGRRSYSPRGRS---PRRRSLSP---RGR 180
                   GG GRRRS+S     PRYRRSPSYGRRSYSPR RS   PRRRS SP   RGR
Sbjct: 121 --------GGTGRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGR 180

Query: 181 SFSRS-PPYRGREELPYANGTG 184
           S+SRS PPYR REE+PYANG G
Sbjct: 181 SYSRSPPPYRAREEVPYANGNG 191

[Close]

BLAST of Chy4G070070 vs. ExPASy Swiss-Prot
Match: Q9SJA6 (Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana OX=3702 GN=RSZ22A PE=1 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 6.4e-68
Identity = 150/199 (75.38%), Postives = 160/199 (80.40%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           MSRVYVGNLDPRV+ERELEDEFR FGVIRSVWVARRPPGYAF+DF+D RDARDAI E+DG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGG------GGRGRSGGSDLKCYECGEPGHFARECRLRGGGG 120
           KNGWRVE SHN RGGGGGRGG      GGRGR GGSDLKCYECGE GHFARECR RGG G
Sbjct: 61  KNGWRVEQSHN-RGGGGGRGGGRGGGDGGRGR-GGSDLKCYECGESGHFARECRSRGGSG 120

Query: 121 GGGGGGGGGAGRRRSRS-----PRYRRSPSY-GRRSYSPRGRS---PRRRSLSPRGRSFS 180
                     GRRRSRS     PRYR+SP+Y GRRSYSPR RS   PRRRS SPRGR++S
Sbjct: 121 ----------GRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPPPPRRRSPSPRGRNYS 180

Query: 181 RS-PPYRGREELPYANGTG 184
           RS PPYR R+E+PYANG G
Sbjct: 181 RSPPPYRARDEVPYANGNG 187

[Close]

BLAST of Chy4G070070 vs. ExPASy Swiss-Prot
Match: Q69KL9 (Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica OX=39947 GN=RSZ21A PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.6e-61
Identity = 135/184 (73.37%), Postives = 148/184 (80.43%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           M+RVYVGNLDPRV+ RELEDEFRVFGV+RSVWVAR+PPG+AFIDFDD RDA+DAI ++DG
Sbjct: 1   MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG 120
           KNGWRVELS N+       G GGR R G S+ KCYECGE GHFARECRLR G GG G G 
Sbjct: 61  KNGWRVELSRNA-----SSGRGGRDRYGSSESKCYECGETGHFARECRLRIGSGGLGSGR 120

Query: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSP-RGRSFSRSPPY-RGREELP- 180
                R RSRSPRYRRSPSYGRRSYSP GRSPRRRS+SP R RS+SRSP Y RGR+E P 
Sbjct: 121 RRSRSRSRSRSPRYRRSPSYGRRSYSPAGRSPRRRSVSPARARSYSRSPQYNRGRDESPA 179

Query: 181 YANG 182
           Y NG
Sbjct: 181 YDNG 179

[Close]

BLAST of Chy4G070070 vs. ExPASy Swiss-Prot
Match: Q6K4N0 (Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp. japonica OX=39947 GN=RSZP21 PE=2 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.2e-60
Identity = 131/186 (70.43%), Postives = 147/186 (79.03%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           M+R+YVGNLDPRV+  ELEDEFRVFGV+RSVWVAR+PPG+AFIDFDD RDA DA+ +LDG
Sbjct: 1   MARLYVGNLDPRVTSGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG 120
           KNGWRVELS NS         GGR R GGS++KCYECGE GHFARECRLR G GG G G 
Sbjct: 61  KNGWRVELSRNS------SSRGGRDRHGGSEMKCYECGETGHFARECRLRIGPGGLGSGK 120

Query: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSP-RGRSFSRSPPYRGREELPYA 180
                R RSRSP+YR+SP+YGRRSYSPR RSPRRRS+SP RGRS+SRSP  RGR   PYA
Sbjct: 121 RRSRSRSRSRSPQYRKSPTYGRRSYSPRDRSPRRRSVSPVRGRSYSRSP--RGRGGSPYA 178

Query: 181 NGTGAG 186
           +G   G
Sbjct: 181 DGRDGG 178

[Close]

BLAST of Chy4G070070 vs. ExPASy Swiss-Prot
Match: Q6K9C3 (Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp. japonica OX=39947 GN=RSZ23 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.6e-55
Identity = 134/207 (64.73%), Postives = 145/207 (70.05%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           M+RVYVGNLDPRV+ RE+EDEFRVFGV+RSVWVAR+PPG+AFIDFDD RDA DAI +LDG
Sbjct: 1   MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG 120
           KNGWRVELS  +   G GR   GR RSGGSD+KCYECGEPGHFARECRLR G GG G G 
Sbjct: 61  KNGWRVELSTKA---GSGR---GRDRSGGSDMKCYECGEPGHFARECRLRIGSGGLGSGR 120

Query: 121 GGG---------AGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLS-----PRGRSFSR 180
                        GR RSRSPRYRRSPSYGR   SPR RSP+RRS S      R RS+SR
Sbjct: 121 RRSRSRSRSPRYRGRSRSRSPRYRRSPSYGR---SPRDRSPKRRSYSRSPPPARARSYSR 180

[Close]

BLAST of Chy4G070070 vs. ExPASy TrEMBL
Match: A0A0A0LEI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881900 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 1.8e-94
Identity = 180/183 (98.36%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG 120

Query: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSFSRSPPYRGREELPYAN 180
           GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRS+SPRGRSFSRSPPYRGREE+PYAN
Sbjct: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSVSPRGRSFSRSPPYRGREEIPYAN 180

Query: 181 GTG 184
           G G
Sbjct: 181 GNG 183

[Close]

BLAST of Chy4G070070 vs. ExPASy TrEMBL
Match: A0A6J1BUF4 (serine/arginine-rich splicing factor RSZ22-like OS=Momordica charantia OX=3673 GN=LOC111005801 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.5e-91
Identity = 177/183 (96.72%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLR    GGGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLR----GGGGGG 120

Query: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSFSRSPPYRGREELPYAN 180
           GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRS+SRSPPYRGREELPYAN
Sbjct: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREELPYAN 179

Query: 181 GTG 184
           G G
Sbjct: 181 GNG 179

[Close]

BLAST of Chy4G070070 vs. ExPASy TrEMBL
Match: A0A1S3CQW5 (serine/arginine-rich splicing factor RSZ22A OS=Cucumis melo OX=3656 GN=LOC103503748 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90
Identity = 176/183 (96.17%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLR      GGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLR------GGGG 120

Query: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSFSRSPPYRGREELPYAN 180
           GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSFSRSPPYRGREELPYAN
Sbjct: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSFSRSPPYRGREELPYAN 177

Query: 181 GTG 184
           G G
Sbjct: 181 GNG 177

[Close]

BLAST of Chy4G070070 vs. ExPASy TrEMBL
Match: A0A5D3E624 (Serine/arginine-rich splicing factor RSZ22A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006670 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.3e-89
Identity = 174/181 (96.13%), Postives = 174/181 (96.13%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLR      GGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLR------GGGG 120

Query: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSFSRSPPYRGREELPYAN 180
           GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSP GRSFSRSPPYRGREELPYAN
Sbjct: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPHGRSFSRSPPYRGREELPYAN 175

Query: 181 G 182
           G
Sbjct: 181 G 175

[Close]

BLAST of Chy4G070070 vs. ExPASy TrEMBL
Match: A0A6J1FS77 (serine/arginine-rich splicing factor RSZ22-like OS=Cucurbita moschata OX=3662 GN=LOC111446389 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 5.2e-89
Identity = 174/183 (95.08%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG 120
           KNGWRVELSHNSRGGGGG  GGGRGRSGGSDLKCYECGEPGHFARECR R   GGGGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSR---GGGGGGG 120

Query: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSFSRSPPYRGREELPYAN 180
           GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRS+SRSPPYRGREE+PYAN
Sbjct: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYAN 180

Query: 181 GTG 184
           G G
Sbjct: 181 GNG 180

[Close]

BLAST of Chy4G070070 vs. NCBI nr
Match: XP_004136307.1 (serine/arginine-rich splicing factor RSZ22 [Cucumis sativus] >XP_011652534.1 serine/arginine-rich splicing factor RSZ22 [Cucumis sativus] >XP_011652535.1 serine/arginine-rich splicing factor RSZ22 [Cucumis sativus] >KGN60178.1 hypothetical protein Csa_001673 [Cucumis sativus])

HSP 1 Score: 358 bits (918), Expect = 5.30e-124
Identity = 180/183 (98.36%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG 120

Query: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSFSRSPPYRGREELPYAN 180
           GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRS+SPRGRSFSRSPPYRGREE+PYAN
Sbjct: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSVSPRGRSFSRSPPYRGREEIPYAN 180

Query: 181 GTG 183
           G G
Sbjct: 181 GNG 183

[Close]

BLAST of Chy4G070070 vs. NCBI nr
Match: XP_022133130.1 (serine/arginine-rich splicing factor RSZ22-like [Momordica charantia])

HSP 1 Score: 348 bits (892), Expect = 4.23e-120
Identity = 177/183 (96.72%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGG    G
Sbjct: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGG----G 120

Query: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSFSRSPPYRGREELPYAN 180
           GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRS+SRSPPYRGREELPYAN
Sbjct: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREELPYAN 179

Query: 181 GTG 183
           G G
Sbjct: 181 GNG 179

[Close]

BLAST of Chy4G070070 vs. NCBI nr
Match: XP_008466294.1 (PREDICTED: serine/arginine-rich splicing factor RSZ22A [Cucumis melo])

HSP 1 Score: 345 bits (886), Expect = 3.24e-119
Identity = 176/183 (96.17%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGG     
Sbjct: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGG----- 120

Query: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSFSRSPPYRGREELPYAN 180
            GGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSFSRSPPYRGREELPYAN
Sbjct: 121 -GGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSFSRSPPYRGREELPYAN 177

Query: 181 GTG 183
           G G
Sbjct: 181 GNG 177

[Close]

BLAST of Chy4G070070 vs. NCBI nr
Match: XP_023524392.1 (serine/arginine-rich splicing factor RSZ22-like [Cucurbita pepo subsp. pepo] >XP_023524393.1 serine/arginine-rich splicing factor RSZ22-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 342 bits (877), Expect = 8.78e-118
Identity = 175/183 (95.63%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG 120
           KNGWRVELSHNSRGGGGG  GGGRGRSGGSDLKCYECGEPGHFARECR RGGGGGG  GG
Sbjct: 61  KNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGGGGG--GG 120

Query: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSFSRSPPYRGREELPYAN 180
           GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRS+SRSPPYRGREE+PYAN
Sbjct: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYAN 180

Query: 181 GTG 183
           G G
Sbjct: 181 GNG 181

[Close]

BLAST of Chy4G070070 vs. NCBI nr
Match: TYK31362.1 (serine/arginine-rich splicing factor RSZ22A-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 342 bits (877), Expect = 2.52e-117
Identity = 177/194 (91.24%), Postives = 178/194 (91.75%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGG     
Sbjct: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGG----- 120

Query: 121 GGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSFSRSPPYRGREELPYAN 180
            GGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSP GRSFSRSPPYRGREELPYAN
Sbjct: 121 -GGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPHGRSFSRSPPYRGREELPYAN 179

Query: 181 GTGAGAGAEDCRLL 194
           G         CRL+
Sbjct: 181 G---------CRLV 179

[Close]

BLAST of Chy4G070070 vs. TAIR 10
Match: AT4G31580.1 (serine/arginine-rich 22 )

HSP 1 Score: 261.2 bits (666), Expect = 7.0e-70
Identity = 150/202 (74.26%), Postives = 157/202 (77.72%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           MSRVYVGNLDPRV+ERELEDEFR FGV+RSVWVARRPPGYAF+DF+DPRDARDAI  LDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 61  KNGWRVELSHN--SRGGGG-----GRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGG 120
           KNGWRVE SHN   RGGGG     G GGGGRG  GGSDLKCYECGE GHFARECR R   
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNR--- 120

Query: 121 GGGGGGGGGGAGRRRSRS-----PRYRRSPSYGRRSYSPRGRS---PRRRSLSP---RGR 180
                   GG GRRRS+S     PRYRRSPSYGRRSYSPR RS   PRRRS SP   RGR
Sbjct: 121 --------GGTGRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGR 180

Query: 181 SFSRS-PPYRGREELPYANGTG 184
           S+SRS PPYR REE+PYANG G
Sbjct: 181 SYSRSPPPYRAREEVPYANGNG 191

[Close]

BLAST of Chy4G070070 vs. TAIR 10
Match: AT4G31580.2 (serine/arginine-rich 22 )

HSP 1 Score: 261.2 bits (666), Expect = 7.0e-70
Identity = 150/202 (74.26%), Postives = 157/202 (77.72%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           MSRVYVGNLDPRV+ERELEDEFR FGV+RSVWVARRPPGYAF+DF+DPRDARDAI  LDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 61  KNGWRVELSHN--SRGGGG-----GRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGG 120
           KNGWRVE SHN   RGGGG     G GGGGRG  GGSDLKCYECGE GHFARECR R   
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNR--- 120

Query: 121 GGGGGGGGGGAGRRRSRS-----PRYRRSPSYGRRSYSPRGRS---PRRRSLSP---RGR 180
                   GG GRRRS+S     PRYRRSPSYGRRSYSPR RS   PRRRS SP   RGR
Sbjct: 121 --------GGTGRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGR 180

Query: 181 SFSRS-PPYRGREELPYANGTG 184
           S+SRS PPYR REE+PYANG G
Sbjct: 181 SYSRSPPPYRAREEVPYANGNG 191

[Close]

BLAST of Chy4G070070 vs. TAIR 10
Match: AT2G24590.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein )

HSP 1 Score: 258.5 bits (659), Expect = 4.5e-69
Identity = 150/199 (75.38%), Postives = 160/199 (80.40%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           MSRVYVGNLDPRV+ERELEDEFR FGVIRSVWVARRPPGYAF+DF+D RDARDAI E+DG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGG------GGRGRSGGSDLKCYECGEPGHFARECRLRGGGG 120
           KNGWRVE SHN RGGGGGRGG      GGRGR GGSDLKCYECGE GHFARECR RGG G
Sbjct: 61  KNGWRVEQSHN-RGGGGGRGGGRGGGDGGRGR-GGSDLKCYECGESGHFARECRSRGGSG 120

Query: 121 GGGGGGGGGAGRRRSRS-----PRYRRSPSY-GRRSYSPRGRS---PRRRSLSPRGRSFS 180
                     GRRRSRS     PRYR+SP+Y GRRSYSPR RS   PRRRS SPRGR++S
Sbjct: 121 ----------GRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPPPPRRRSPSPRGRNYS 180

Query: 181 RS-PPYRGREELPYANGTG 184
           RS PPYR R+E+PYANG G
Sbjct: 181 RSPPPYRARDEVPYANGNG 187

[Close]

BLAST of Chy4G070070 vs. TAIR 10
Match: AT1G23860.1 (RS-containing zinc finger protein 21 )

HSP 1 Score: 213.0 bits (541), Expect = 2.2e-55
Identity = 128/200 (64.00%), Postives = 140/200 (70.00%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           M+RVYVGNLDPRV+ERELEDEF+ FGV+R+VWVARRPPGYAF++FDD RDA DAI  LD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG 120
           KNGWRVELSH  +   GGRGGGG  R G  D KCYECGE GHFARECR            
Sbjct: 61  KNGWRVELSHKDK---GGRGGGGGRRGGIEDSKCYECGELGHFARECR-----------R 120

Query: 121 GGGAGRRRSRSPRYRRSPSYG--RRSYSPRGR--SPRRRSLSP--RGRSFSRSPPYRGR- 180
           G G+ RRRS SPR RRSP YG  RRS SPRGR   PRRRS++P  RGRS+SRSPPYRG  
Sbjct: 121 GRGSVRRRSPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSR 180

Query: 181 ------------EELPYANG 182
                          PYANG
Sbjct: 181 RDSPRRRDSPYGRRSPYANG 186

[Close]

BLAST of Chy4G070070 vs. TAIR 10
Match: AT1G23860.2 (RS-containing zinc finger protein 21 )

HSP 1 Score: 213.0 bits (541), Expect = 2.2e-55
Identity = 128/200 (64.00%), Postives = 140/200 (70.00%), Query Frame = 0


Query: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60
           M+RVYVGNLDPRV+ERELEDEF+ FGV+R+VWVARRPPGYAF++FDD RDA DAI  LD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGGGG 120
           KNGWRVELSH  +   GGRGGGG  R G  D KCYECGE GHFARECR            
Sbjct: 61  KNGWRVELSHKDK---GGRGGGGGRRGGIEDSKCYECGELGHFARECR-----------R 120

Query: 121 GGGAGRRRSRSPRYRRSPSYG--RRSYSPRGR--SPRRRSLSP--RGRSFSRSPPYRGR- 180
           G G+ RRRS SPR RRSP YG  RRS SPRGR   PRRRS++P  RGRS+SRSPPYRG  
Sbjct: 121 GRGSVRRRSPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSR 180

Query: 181 ------------EELPYANG 182
                          PYANG
Sbjct: 181 RDSPRRRDSPYGRRSPYANG 186

The following BLAST results are available for this feature:

BLAST of Chy4G070070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81126	9.8e-69	74.26	Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana OX=3702 GN=RS...	[more]
Q9SJA6	6.4e-68	75.38	Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q69KL9	2.6e-61	73.37	Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica OX=3...	[more]
Q6K4N0	2.2e-60	70.43	Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q6K9C3	3.6e-55	64.73	Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of Chy4G070070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEI3	1.8e-94	98.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881900 PE=4 SV=1	[more]
A0A6J1BUF4	2.5e-91	96.72	serine/arginine-rich splicing factor RSZ22-like OS=Momordica charantia OX=3673 G...	[more]
A0A1S3CQW5	1.2e-90	96.17	serine/arginine-rich splicing factor RSZ22A OS=Cucumis melo OX=3656 GN=LOC103503...	[more]
A0A5D3E624	2.3e-89	96.13	Serine/arginine-rich splicing factor RSZ22A-like isoform X1 OS=Cucumis melo var....	[more]
A0A6J1FS77	5.2e-89	95.08	serine/arginine-rich splicing factor RSZ22-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Chy4G070070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136307.1	5.30e-124	98.36	serine/arginine-rich splicing factor RSZ22 [Cucumis sativus] >XP_011652534.1 ser...	[more]
XP_022133130.1	4.23e-120	96.72	serine/arginine-rich splicing factor RSZ22-like [Momordica charantia]	[more]
XP_008466294.1	3.24e-119	96.17	PREDICTED: serine/arginine-rich splicing factor RSZ22A [Cucumis melo]	[more]
XP_023524392.1	8.78e-118	95.63	serine/arginine-rich splicing factor RSZ22-like [Cucurbita pepo subsp. pepo] >XP...	[more]
TYK31362.1	2.52e-117	91.24	serine/arginine-rich splicing factor RSZ22A-like isoform X1 [Cucumis melo var. m...	[more]

BLAST of Chy4G070070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31580.1	7.0e-70	74.26	serine/arginine-rich 22	[more]
AT4G31580.2	7.0e-70	74.26	serine/arginine-rich 22	[more]
AT2G24590.1	4.5e-69	75.38	RNA recognition motif and CCHC-type zinc finger domains containing protein	[more]
AT1G23860.1	2.2e-55	64.00	RS-containing zinc finger protein 21	[more]
AT1G23860.2	2.2e-55	64.00	RS-containing zinc finger protein 21	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 3..69 e-value: 9.2E-18 score: 75.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 4..61 e-value: 7.3E-16 score: 57.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 2..73 score: 16.107859
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 93..109 e-value: 7.9E-5 score: 32.0
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 93..108 e-value: 7.9E-8 score: 32.1
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 93..108 score: 10.971343
None	No IPR available	GENE3D	4.10.60.10		coord: 82..155 e-value: 7.2E-8 score: 33.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..197
None	No IPR available	PANTHER	PTHR23147:SF184	SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1	coord: 2..185
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 2..185
None	No IPR available	CDD	cd12373	RRM_SRSF3_like	coord: 3..71 e-value: 6.41135E-35 score: 116.181
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..73 e-value: 1.1E-19 score: 72.5
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..88
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 86..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G070070.1	Chy4G070070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding